Wall clock time and date at job start Tue Mar 31 2020 06:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47128 * 2 1 4 4 C 1.50696 * 109.47377 * 239.99426 * 2 1 3 5 5 H 1.07999 * 120.00168 * 275.00025 * 4 2 1 6 6 C 1.37881 * 119.99716 * 95.00250 * 4 2 1 7 7 N 1.31514 * 119.99553 * 184.91408 * 6 4 2 8 8 Si 1.86798 * 120.00221 * 4.91824 * 6 4 2 9 9 H 1.48497 * 109.47480 * 84.83078 * 8 6 4 10 10 H 1.48501 * 109.46736 * 204.83480 * 8 6 4 11 11 H 1.48499 * 109.46769 * 324.82702 * 8 6 4 12 12 N 1.46501 * 109.47003 * 119.99055 * 2 1 3 13 13 C 1.34773 * 120.00523 * 275.00285 * 12 2 1 14 14 O 1.21289 * 119.99703 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00520 * 179.97438 * 13 12 2 16 16 N 1.46493 * 109.47431 * 180.02562 * 15 13 12 17 17 S 1.65601 * 120.00247 * 165.00178 * 16 15 13 18 18 O 1.42094 * 106.40380 * 178.54189 * 17 16 15 19 19 O 1.42106 * 106.40239 * 311.46115 * 17 16 15 20 20 C 1.76202 * 107.21761 * 64.99665 * 17 16 15 21 21 C 1.38241 * 119.97848 * 269.72753 * 20 17 16 22 22 C 1.38194 * 120.02488 * 179.72585 * 21 20 17 23 23 C 1.38461 * 119.97703 * 0.56990 * 22 21 20 24 24 F 1.35097 * 120.02759 * 179.68113 * 23 22 21 25 25 C 1.38455 * 119.94435 * 359.70810 * 23 22 21 26 26 C 1.38201 * 119.97868 * 359.97438 * 25 23 22 27 27 H 1.08991 * 109.47376 * 295.03944 * 1 2 3 28 28 H 1.08996 * 109.46999 * 55.04407 * 1 2 3 29 29 H 1.09004 * 109.46555 * 175.04048 * 1 2 3 30 30 H 0.97000 * 119.99544 * 180.02562 * 7 6 4 31 31 H 0.97006 * 119.99544 * 95.00231 * 12 2 1 32 32 H 1.09002 * 109.46960 * 300.00676 * 15 13 12 33 33 H 1.09005 * 109.46793 * 60.00326 * 15 13 12 34 34 H 0.97005 * 119.99864 * 345.00238 * 16 15 13 35 35 H 1.08002 * 119.98486 * 359.97438 * 21 20 17 36 36 H 1.08001 * 120.01215 * 180.25596 * 22 21 20 37 37 H 1.08001 * 120.01410 * 179.97438 * 25 23 22 38 38 H 1.07996 * 119.99057 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.1356 -1.7856 -1.2288 6 6 2.3604 0.0120 -2.3580 7 7 2.7062 -0.6134 -3.4620 8 14 2.3137 1.8789 -2.3175 9 1 3.5992 2.3948 -1.7822 10 1 2.1060 2.3988 -3.6929 11 1 1.1987 2.3273 -1.4452 12 7 2.0183 -0.6904 1.1963 13 6 2.1470 -0.0180 2.3572 14 8 1.8581 1.1587 2.4116 15 6 2.6488 -0.7284 3.5879 16 7 2.6975 0.2129 4.7093 17 16 2.8494 -0.3520 6.2586 18 8 2.9010 0.7922 7.0997 19 8 1.8821 -1.3824 6.4066 20 6 4.4263 -1.1290 6.3782 21 6 4.5552 -2.4767 6.0985 22 6 5.7925 -3.0859 6.1865 23 6 6.9012 -2.3486 6.5664 24 9 8.1101 -2.9445 6.6590 25 6 6.7698 -1.0002 6.8519 26 6 5.5326 -0.3916 6.7568 27 1 -0.3633 0.4349 0.9310 28 1 -0.3633 0.5888 -0.8422 29 1 -0.3632 -1.0239 -0.0888 30 1 2.9372 -0.1051 -4.2552 31 1 2.2491 -1.6316 1.1528 32 1 1.9759 -1.5502 3.8328 33 1 3.6480 -1.1209 3.3988 34 1 2.6409 1.1672 4.5444 35 1 3.6894 -3.0528 5.8073 36 1 5.8938 -4.1378 5.9640 37 1 7.6338 -0.4241 7.1487 38 1 5.4298 0.6601 6.9798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411779651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:46 Heat of formation + Delta-G solvation = -130.983801 kcal Electronic energy + Delta-G solvation = -25443.414165 eV Core-core repulsion = 21327.479967 eV Total energy + Delta-G solvation = -4115.934198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.52328 -39.42110 -39.30125 -37.48213 -36.09431 -35.42507 -34.44038 -32.47509 -31.75214 -31.26754 -30.17205 -26.79496 -25.36362 -23.70446 -23.62838 -21.27462 -19.96700 -19.71963 -18.65379 -18.30414 -17.73918 -17.11486 -17.04165 -16.44847 -16.16839 -15.76319 -15.38490 -15.24902 -15.11190 -14.70351 -14.16827 -13.86776 -13.83601 -13.75642 -13.21496 -13.03382 -12.98912 -12.58397 -12.51294 -12.33473 -12.26163 -12.17337 -11.68595 -11.53319 -11.33842 -11.18001 -10.89344 -10.66775 -9.96252 -9.87544 -9.72006 -9.64239 -9.38181 -9.29034 -8.78270 -8.25569 -6.30918 -4.35353 -0.01408 0.26903 0.64747 2.58346 2.91840 3.02724 3.20713 3.28977 3.35346 3.49729 3.60544 3.76342 3.95690 4.25417 4.25765 4.30971 4.64027 4.76672 4.86604 5.07780 5.10813 5.21571 5.22176 5.29499 5.45478 5.50666 5.53569 5.60175 6.22463 6.26118 6.44552 6.60154 6.79857 6.87245 7.09276 7.26385 7.43393 8.00490 8.42755 8.67369 8.77336 9.30422 10.80593 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.003077 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.691051 B = 9098.983990 C =10105.510638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.230 3.770 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.080 0.920 6 C 0.082 3.918 7 N -0.887 5.887 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.698 5.698 13 C 0.500 3.500 14 O -0.551 6.551 15 C 0.092 3.908 16 N -1.101 6.101 17 S 2.704 3.296 18 O -0.954 6.954 19 O -0.953 6.953 20 C -0.693 4.693 21 C 0.009 3.991 22 C -0.174 4.174 23 C 0.155 3.845 24 F -0.130 7.130 25 C -0.176 4.176 26 C 0.013 3.987 27 H 0.030 0.970 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.269 0.731 31 H 0.396 0.604 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.430 0.570 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.792 -4.006 20.266 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.128 3.872 3 H 0.069 0.931 4 C -0.571 4.571 5 H 0.098 0.902 6 C -0.123 4.123 7 N -0.523 5.523 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.347 5.347 13 C 0.283 3.717 14 O -0.430 6.430 15 C -0.038 4.038 16 N -0.865 5.865 17 S 2.792 3.208 18 O -0.944 6.944 19 O -0.943 6.943 20 C -0.779 4.779 21 C -0.010 4.010 22 C -0.194 4.194 23 C 0.135 3.865 24 F -0.108 7.108 25 C -0.196 4.196 26 C -0.006 4.006 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.230 0.770 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.269 0.731 35 H 0.171 0.829 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.090 -3.290 20.745 21.869 hybrid contribution 1.237 0.424 -0.537 1.414 sum 7.328 -2.865 20.207 21.685 Atomic orbital electron populations 1.22225 0.98376 1.00749 0.99388 1.19181 0.91072 0.94362 0.82553 0.93084 1.20996 1.45481 0.95672 0.94903 0.90213 1.24947 0.93542 0.98682 0.95147 1.69878 1.44407 1.36279 1.01711 0.86887 0.79760 0.85737 0.77474 1.19872 1.21134 1.18461 1.46640 1.64380 1.14050 1.09609 1.20261 0.78985 0.87737 0.84736 1.90650 1.51618 1.16004 1.84747 1.21191 1.03106 0.92554 0.86922 1.55203 1.90403 1.18195 1.22703 1.01677 0.73682 0.73443 0.72048 1.93605 1.87055 1.49719 1.64040 1.93601 1.56629 1.59047 1.84977 1.31156 1.23242 1.05753 1.17766 1.20881 0.97744 0.92182 0.90223 1.21320 0.91882 1.01685 1.04506 1.18032 0.80596 0.91515 0.96322 1.91557 1.42402 1.83873 1.93016 1.21308 0.99660 0.93479 1.05118 1.20836 0.90163 1.00140 0.89501 0.95122 0.92823 0.93265 0.92150 0.77022 0.87427 0.88889 0.73115 0.82853 0.83459 0.83603 0.83028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.47 37.16 0.35 -2.74 16 2 C 0.23 5.15 2.22 -69.08 -0.15 5.00 16 3 H 0.05 1.25 4.73 -51.93 -0.25 1.00 16 4 C -0.53 -13.59 9.05 -34.44 -0.31 -13.90 16 5 H 0.08 2.14 8.06 -52.49 -0.42 1.71 16 6 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 7 N -0.89 -25.26 13.96 55.43 0.77 -24.49 16 8 Si 0.87 20.80 26.99 -169.99 -4.59 16.21 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.26 -6.09 6.82 56.52 0.39 -5.71 16 12 N -0.70 -12.52 5.07 -54.93 -0.28 -12.80 16 13 C 0.50 8.37 7.86 -10.99 -0.09 8.29 16 14 O -0.55 -11.20 15.39 5.55 0.09 -11.12 16 15 C 0.09 1.05 6.70 -5.20 -0.03 1.02 16 16 N -1.10 -12.42 5.93 -11.66 -0.07 -12.49 16 17 S 2.70 28.98 5.74 -107.50 -0.62 28.36 16 18 O -0.95 -12.44 17.28 -57.17 -0.99 -13.43 16 19 O -0.95 -12.18 16.74 -57.17 -0.96 -13.14 16 20 C -0.69 -6.22 5.95 -39.58 -0.24 -6.45 16 21 C 0.01 0.07 9.52 -39.60 -0.38 -0.31 16 22 C -0.17 -1.32 10.03 -39.52 -0.40 -1.72 16 23 C 0.16 1.31 7.30 -39.42 -0.29 1.02 16 24 F -0.13 -1.17 17.27 2.25 0.04 -1.13 16 25 C -0.18 -1.37 10.03 -39.52 -0.40 -1.76 16 26 C 0.01 0.11 9.52 -39.59 -0.38 -0.27 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.40 5.97 8.59 -40.82 -0.35 5.62 16 32 H 0.11 1.00 7.75 -51.93 -0.40 0.60 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.43 5.15 7.70 -34.47 -0.27 4.89 16 35 H 0.15 0.94 7.61 -52.49 -0.40 0.54 16 36 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.15 1.03 7.61 -52.49 -0.40 0.64 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -34.25 347.56 -7.94 -42.19 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.17 Total: 6.34 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.40 Total: -9.74 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.43 Total: -49.78 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -1.86 Total: -37.69 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.59 Total: 16.21 kcal Atomic # 16 Polarization: 28.98 SS G_CDS: -0.62 Total: 28.36 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.25 -7.94 -42.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411779651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.793 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds