Wall clock time and date at job start Tue Mar 31 2020 04:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99668 * 2 1 4 4 C 1.53001 * 109.46707 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47198 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99860 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00204 * 180.02562 * 5 4 3 8 8 C 1.46503 * 120.00001 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47032 * 180.02562 * 8 7 5 10 10 O 1.42898 * 110.63082 * 61.89297 * 9 8 7 11 11 C 1.55141 * 110.70524 * 298.59802 * 9 8 7 12 12 C 1.54902 * 101.65616 * 205.96484 * 11 9 8 13 13 N 1.47850 * 104.79371 * 37.06846 * 12 11 9 14 14 C 1.46903 * 110.99972 * 213.63421 * 13 12 11 15 15 C 1.50696 * 109.47177 * 290.84266 * 14 13 12 16 16 O 1.21292 * 120.00262 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99627 * 179.97438 * 15 14 13 18 18 C 1.37090 * 119.99714 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00232 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99992 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00236 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99845 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00316 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00267 * 22 20 18 25 25 H 1.48504 * 109.46913 * 150.00066 * 22 20 18 26 26 C 1.47443 * 108.56644 * 335.90793 * 13 12 11 27 27 H 1.09002 * 109.47091 * 60.00078 * 1 2 3 28 28 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46732 * 299.99991 * 1 2 3 30 30 H 1.09004 * 109.47064 * 60.00524 * 3 2 1 31 31 H 1.08998 * 109.47250 * 299.99505 * 3 2 1 32 32 H 1.08998 * 109.47053 * 60.00238 * 4 3 2 33 33 H 1.09001 * 109.47657 * 300.00255 * 4 3 2 34 34 H 0.96999 * 119.99910 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.46994 * 59.99979 * 8 7 5 36 36 H 1.09001 * 109.47159 * 300.00337 * 8 7 5 37 37 H 0.96693 * 114.00206 * 303.11192 * 10 9 8 38 38 H 1.08999 * 110.99496 * 324.05897 * 11 9 8 39 39 H 1.09005 * 110.98799 * 87.83913 * 11 9 8 40 40 H 1.09006 * 110.37708 * 278.24459 * 12 11 9 41 41 H 1.08997 * 110.37778 * 155.89917 * 12 11 9 42 42 H 1.09005 * 109.46883 * 170.84435 * 14 13 12 43 43 H 1.09002 * 109.46817 * 50.84885 * 14 13 12 44 44 H 0.96999 * 120.00048 * 0.02562 * 17 15 14 45 45 H 0.97001 * 119.99781 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.88566 * 120.39645 * 26 13 12 47 47 H 1.09000 * 109.88732 * 241.41360 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0013 6 8 3.4356 3.5425 0.0017 7 7 5.4888 2.7023 0.0014 8 6 6.0847 4.0406 0.0014 9 6 7.6099 3.9198 0.0009 10 8 8.0616 3.2522 -1.1790 11 6 8.1022 3.1838 1.2748 12 6 9.5377 3.7461 1.4260 13 7 9.4330 5.1632 1.0176 14 6 10.6637 5.6118 0.3528 15 6 11.7825 5.6801 1.3600 16 8 11.5753 5.3838 2.5178 17 7 13.0138 6.0695 0.9741 18 6 14.0318 6.1311 1.8902 19 1 13.8472 5.8673 2.9211 20 6 15.3011 6.5331 1.4925 21 7 16.2768 6.5927 2.3708 22 14 15.6205 6.9888 -0.2907 23 1 16.0386 5.7790 -1.0435 24 1 14.3791 7.5406 -0.8906 25 1 16.6976 8.0091 -0.3556 26 6 8.2673 5.3102 0.1268 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8901 31 1 1.6886 1.8464 -0.8900 32 1 3.8574 0.6437 -0.8891 33 1 3.8568 0.6439 0.8908 34 1 6.0589 1.9175 0.0007 35 1 5.7629 4.5815 0.8914 36 1 5.7631 4.5816 -0.8885 37 1 7.6780 2.3736 -1.3051 38 1 7.4885 3.4431 2.1374 39 1 8.1192 2.1049 1.1203 40 1 10.2255 3.2121 0.7702 41 1 9.8666 3.6731 2.4626 42 1 10.5036 6.5993 -0.0800 43 1 10.9276 4.9077 -0.4364 44 1 13.1797 6.3061 0.0481 45 1 17.1629 6.8729 2.0930 46 1 7.5588 6.0179 0.5571 47 1 8.5915 5.6599 -0.8533 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484197930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:18 Heat of formation + Delta-G solvation = -152.030749 kcal Electronic energy + Delta-G solvation = -27960.972793 eV Core-core repulsion = 23758.385121 eV Total energy + Delta-G solvation = -4202.587672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.62430 -39.64348 -38.31160 -38.06542 -36.03257 -34.69490 -33.89754 -32.48050 -31.71836 -31.25024 -29.56379 -27.64965 -26.94165 -25.43794 -23.96002 -23.50693 -21.55189 -20.84866 -20.46097 -19.35628 -18.38478 -18.13299 -17.25349 -16.84284 -16.42331 -16.28518 -15.96967 -15.65737 -15.45777 -15.21609 -15.03280 -14.67653 -14.60223 -14.22796 -13.86737 -13.64615 -13.36774 -13.22149 -12.91756 -12.73944 -12.56870 -12.41084 -12.33028 -12.00594 -11.91378 -11.68260 -11.65583 -11.52255 -11.30821 -11.16357 -10.91618 -10.57946 -10.35470 -10.22922 -10.17174 -9.95832 -9.57933 -9.53589 -8.58005 -8.16243 -8.01820 -6.29272 -3.80433 2.16594 2.47110 3.04430 3.08248 3.16357 3.41383 3.69575 3.77088 3.91641 4.11979 4.18114 4.25958 4.31230 4.49766 4.54832 4.63346 4.87208 4.88366 4.88818 4.98888 5.06870 5.20217 5.21946 5.24283 5.26449 5.30532 5.34805 5.39401 5.52784 5.57824 5.66877 5.76757 5.80857 5.88302 5.94211 6.05064 6.33912 6.61454 6.91740 7.08874 7.09226 7.23244 7.60499 7.71100 8.16416 8.62638 8.97446 9.44821 9.86270 10.83937 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.041523 B = 0.001790 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.161914 B =15635.778414 C =15816.851334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.075 3.925 4 C -0.141 4.141 5 C 0.520 3.480 6 O -0.538 6.538 7 N -0.729 5.729 8 C 0.102 3.898 9 C 0.097 3.903 10 O -0.545 6.545 11 C -0.154 4.154 12 C 0.057 3.943 13 N -0.501 5.501 14 C 0.037 3.963 15 C 0.454 3.546 16 O -0.560 6.560 17 N -0.593 5.593 18 C -0.304 4.304 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.883 5.883 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.277 1.277 26 C 0.057 3.943 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.399 0.601 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.371 0.629 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.095 0.905 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.717 -12.125 -9.928 30.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.002 4.002 4 C -0.181 4.181 5 C 0.306 3.694 6 O -0.415 6.415 7 N -0.382 5.382 8 C -0.022 4.022 9 C 0.055 3.945 10 O -0.350 6.350 11 C -0.193 4.193 12 C -0.070 4.070 13 N -0.224 5.224 14 C -0.094 4.094 15 C 0.240 3.760 16 O -0.441 6.441 17 N -0.233 5.233 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.523 5.523 22 Si 0.705 3.295 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.202 1.202 26 C -0.071 4.071 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.234 0.766 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.218 0.782 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.203 0.797 45 H 0.083 0.917 46 H 0.113 0.887 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.731 -10.835 -8.707 30.129 hybrid contribution 0.440 -0.714 -2.090 2.252 sum -26.292 -11.550 -10.797 30.679 Atomic orbital electron populations 1.22749 0.80402 1.02862 1.00302 1.87799 1.20232 1.27897 1.95590 1.22157 0.91750 0.84347 1.01899 1.21479 0.95726 0.94956 1.05914 1.20397 0.82092 0.91194 0.75721 1.90744 1.60846 1.40839 1.49045 1.45917 1.06804 1.09349 1.76098 1.22014 0.92093 0.84253 1.03822 1.22800 0.91168 0.95001 0.85519 1.86659 1.71155 1.34073 1.43155 1.23430 0.98476 0.99709 0.97648 1.22995 0.94462 0.86545 1.03039 1.63368 1.01600 1.20555 1.36907 1.22165 0.90565 1.01261 0.95442 1.19632 0.83060 0.83940 0.89406 1.90543 1.82288 1.52195 1.19085 1.42205 1.09167 1.61459 1.10423 1.19422 0.86942 1.42904 0.93967 0.86302 1.25026 0.95418 0.97675 0.98019 1.69623 1.01871 1.47004 1.33781 0.86681 0.78740 0.79206 0.84825 1.19697 1.19480 1.20190 1.22850 0.93816 0.93360 0.97108 0.93883 0.89439 0.93848 0.92276 0.92332 0.87839 0.87759 0.76618 0.89747 0.90310 0.78172 0.89463 0.90656 0.93484 0.88493 0.89255 0.92844 0.79748 0.91661 0.88736 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.40 -3.10 10.70 -35.23 -0.38 -3.48 16 3 C 0.08 0.55 5.23 37.16 0.19 0.75 16 4 C -0.14 -0.80 6.07 -27.88 -0.17 -0.97 16 5 C 0.52 4.23 7.83 -10.99 -0.09 4.15 16 6 O -0.54 -6.60 15.98 5.56 0.09 -6.51 16 7 N -0.73 -4.63 5.13 -60.29 -0.31 -4.94 16 8 C 0.10 0.84 4.74 -4.04 -0.02 0.83 16 9 C 0.10 0.90 0.92 -88.80 -0.08 0.82 16 10 O -0.55 -5.02 13.11 -35.23 -0.46 -5.48 16 11 C -0.15 -1.51 5.71 -24.60 -0.14 -1.66 16 12 C 0.06 0.84 5.74 -2.30 -0.01 0.82 16 13 N -0.50 -7.83 4.86 -232.69 -1.13 -8.97 16 14 C 0.04 0.64 5.05 -4.98 -0.03 0.61 16 15 C 0.45 10.36 7.58 -10.98 -0.08 10.28 16 16 O -0.56 -14.90 14.61 5.55 0.08 -14.82 16 17 N -0.59 -14.22 5.09 -10.96 -0.06 -14.28 16 18 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 19 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -25.87 13.96 55.50 0.77 -25.09 16 22 Si 0.88 19.49 27.74 -169.99 -4.71 14.78 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.06 0.68 6.22 -2.84 -0.02 0.66 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.40 1.46 7.29 -40.82 -0.30 1.16 16 35 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.37 1.96 8.05 45.56 0.37 2.33 16 38 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 39 H 0.07 0.56 8.03 -51.93 -0.42 0.14 16 40 H 0.05 0.72 7.62 -51.93 -0.40 0.32 16 41 H 0.10 1.69 7.37 -51.93 -0.38 1.31 16 42 H 0.09 1.35 8.03 -51.93 -0.42 0.93 16 43 H 0.05 0.84 7.85 -51.93 -0.41 0.43 16 44 H 0.37 7.83 5.76 -40.82 -0.24 7.60 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.09 1.01 7.79 -51.93 -0.40 0.61 16 47 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 LS Contribution 385.85 15.07 5.81 5.81 Total: -1.00 -36.42 385.85 -6.62 -43.03 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -6.75 Total: 10.10 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 0.42 Total: 9.84 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.72 Total: -53.27 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.67 Total: -30.29 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.42 -6.62 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484197930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.996 kcal (2) G-P(sol) polarization free energy of solvation -36.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds