Wall clock time and date at job start Tue Mar 31 2020 04:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00140 * 2 1 4 4 C 1.53002 * 109.47081 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47303 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00109 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00137 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99873 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47035 * 179.97438 * 8 7 5 10 10 O 1.42900 * 110.62734 * 300.69830 * 9 8 7 11 11 C 1.55142 * 110.70689 * 63.79950 * 9 8 7 12 12 C 1.55111 * 101.55819 * 153.90630 * 11 9 8 13 13 N 1.47846 * 104.90839 * 323.16266 * 12 11 9 14 14 C 1.46895 * 111.00482 * 146.23721 * 13 12 11 15 15 C 1.50703 * 109.47171 * 69.15579 * 14 13 12 16 16 O 1.21292 * 119.99336 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00015 * 179.97438 * 15 14 13 18 18 C 1.37107 * 119.99977 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99814 * 0.02562 * 18 17 15 20 20 C 1.38944 * 119.99865 * 180.02562 * 18 17 15 21 21 N 1.31407 * 120.00564 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99725 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47018 * 59.99915 * 22 20 18 24 24 H 1.48498 * 109.47330 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47344 * 299.99893 * 22 20 18 26 26 C 1.47446 * 108.56528 * 23.96977 * 13 12 11 27 27 H 1.09005 * 109.46833 * 59.99968 * 1 2 3 28 28 H 1.08999 * 109.47290 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46975 * 300.00152 * 1 2 3 30 30 H 1.09000 * 109.46843 * 60.00013 * 3 2 1 31 31 H 1.08996 * 109.47554 * 300.00239 * 3 2 1 32 32 H 1.09000 * 109.46986 * 60.00450 * 4 3 2 33 33 H 1.08996 * 109.47407 * 300.00679 * 4 3 2 34 34 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47073 * 299.99562 * 8 7 5 36 36 H 1.09000 * 109.47212 * 59.99645 * 8 7 5 37 37 H 0.96704 * 113.99876 * 59.30287 * 10 9 8 38 38 H 1.08996 * 110.99582 * 272.13212 * 11 9 8 39 39 H 1.09003 * 110.98660 * 35.94696 * 11 9 8 40 40 H 1.08994 * 110.43104 * 204.24362 * 12 11 9 41 41 H 1.09007 * 110.21450 * 81.97193 * 12 11 9 42 42 H 1.09002 * 109.47678 * 189.16165 * 14 13 12 43 43 H 1.09002 * 109.46810 * 309.15897 * 14 13 12 44 44 H 0.97000 * 120.00264 * 0.02562 * 17 15 14 45 45 H 0.96999 * 120.00469 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.89138 * 239.60618 * 26 13 12 47 47 H 1.09000 * 109.89032 * 118.41587 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1485 2.5612 0.0013 6 8 3.4357 3.5424 0.0017 7 7 5.4889 2.7020 0.0014 8 6 6.0848 4.0404 0.0026 9 6 7.6101 3.9195 0.0031 10 8 8.0575 3.1983 1.1527 11 6 8.1068 3.2384 -1.2993 12 6 9.5431 3.8113 -1.4213 13 7 9.4369 5.2081 -0.9486 14 6 10.6650 5.6255 -0.2592 15 6 11.7877 5.7399 -1.2581 16 8 11.5844 5.4979 -2.4291 17 7 13.0172 6.1120 -0.8503 18 6 14.0384 6.2165 -1.7591 19 1 13.8575 6.0011 -2.8017 20 6 15.3061 6.5996 -1.3385 21 7 15.5261 6.8623 -0.0699 22 14 16.6976 6.7414 -2.5766 23 1 16.3419 7.7490 -3.6079 24 1 17.9390 7.1639 -1.8799 25 1 16.9180 5.4245 -3.2266 26 6 8.2680 5.3142 -0.0563 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8575 0.6435 -0.8892 33 1 3.8568 0.6437 0.8908 34 1 6.0590 1.9173 0.0014 35 1 5.7633 4.5821 -0.8870 36 1 5.7632 4.5806 0.8930 37 1 7.7020 2.3013 1.2173 38 1 8.1239 2.1540 -1.1909 39 1 7.4960 3.5344 -2.1521 40 1 9.8759 3.7861 -2.4589 41 1 10.2285 3.2476 -0.7882 42 1 10.5033 6.5921 0.2179 43 1 10.9261 4.8859 0.4977 44 1 13.1796 6.3058 0.0862 45 1 16.4110 7.1301 0.2236 46 1 7.5609 6.0409 -0.4561 47 1 8.5888 5.6155 0.9409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484197933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:24 Heat of formation + Delta-G solvation = -159.031000 kcal Electronic energy + Delta-G solvation = -27895.459622 eV Core-core repulsion = 23692.568397 eV Total energy + Delta-G solvation = -4202.891225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -40.57332 -39.57481 -38.23016 -37.94641 -35.94177 -34.63873 -33.83958 -32.45101 -31.43997 -30.99226 -29.49413 -27.54497 -26.86545 -25.37186 -24.08622 -23.47744 -21.52537 -20.81712 -20.42243 -19.19925 -18.15725 -17.85821 -17.23224 -16.81913 -16.38816 -16.21783 -15.95925 -15.61333 -15.38010 -15.19530 -14.90747 -14.56392 -14.35718 -14.18518 -13.86484 -13.76216 -13.38097 -13.22446 -12.90989 -12.70269 -12.44468 -12.38135 -12.02933 -11.91178 -11.66406 -11.59540 -11.48647 -11.44919 -11.19553 -11.04663 -10.81125 -10.42807 -10.32400 -10.19952 -10.16642 -10.15166 -9.53785 -9.45970 -8.44782 -7.95763 -7.89216 -6.38825 -3.79696 2.19753 2.50362 3.21667 3.27129 3.31414 3.43668 3.75393 3.93848 3.99899 4.19858 4.25020 4.31599 4.38454 4.52135 4.62453 4.68065 4.89850 4.90374 5.01002 5.08885 5.16378 5.21596 5.26623 5.28480 5.30866 5.32905 5.43242 5.45191 5.58472 5.63050 5.82265 5.86928 5.91679 5.94102 6.09138 6.31603 6.39924 6.63209 6.95199 7.17807 7.21659 7.29531 7.57339 7.74428 8.08860 8.65082 9.20927 9.57798 10.09901 10.78942 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.045649 B = 0.001715 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.234751 B =16325.949132 C =16477.629435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.141 4.141 5 C 0.519 3.481 6 O -0.538 6.538 7 N -0.728 5.728 8 C 0.103 3.897 9 C 0.097 3.903 10 O -0.544 6.544 11 C -0.155 4.155 12 C 0.058 3.942 13 N -0.500 5.500 14 C 0.040 3.960 15 C 0.445 3.555 16 O -0.579 6.579 17 N -0.565 5.565 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.057 3.943 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.399 0.601 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.370 0.630 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.052 0.948 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.094 0.906 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.536 -12.826 4.563 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.181 4.181 5 C 0.306 3.694 6 O -0.415 6.415 7 N -0.381 5.381 8 C -0.021 4.021 9 C 0.055 3.945 10 O -0.350 6.350 11 C -0.193 4.193 12 C -0.069 4.069 13 N -0.224 5.224 14 C -0.091 4.091 15 C 0.230 3.770 16 O -0.463 6.463 17 N -0.202 5.202 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.071 4.071 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.233 0.767 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.217 0.783 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.112 0.888 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.609 -11.456 3.553 27.377 hybrid contribution 0.837 -0.966 0.695 1.455 sum -23.772 -12.422 4.248 27.156 Atomic orbital electron populations 1.22748 0.80417 1.02847 1.00300 1.87797 1.20219 1.27919 1.95590 1.22155 0.91762 0.84330 1.01900 1.21477 0.95710 0.94983 1.05897 1.20391 0.82103 0.91180 0.75747 1.90744 1.60849 1.40828 1.49083 1.45904 1.06779 1.09365 1.76036 1.22013 0.92167 0.84192 1.03755 1.22818 0.91137 0.94555 0.85973 1.86675 1.73422 1.30177 1.44690 1.23481 0.98550 0.99875 0.97422 1.23007 0.94306 0.86907 1.02699 1.63365 1.01694 1.22721 1.34638 1.22129 0.90411 1.01188 0.95391 1.19727 0.83560 0.84366 0.89320 1.90499 1.82807 1.54741 1.18210 1.41850 1.07545 1.59851 1.10990 1.19644 0.87634 1.43173 0.92406 0.88009 1.25244 0.98703 0.97229 0.96737 1.69602 1.23684 1.46643 1.14467 0.85926 0.79590 0.78866 0.79866 1.19916 1.21006 1.19972 1.22852 0.93795 0.93152 0.97338 0.93861 0.89450 0.93879 0.92328 0.92283 0.87788 0.87838 0.76682 0.89802 0.90325 0.78272 0.90705 0.89559 0.88628 0.93587 0.89384 0.92978 0.77510 0.91865 0.88819 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.40 -3.17 10.70 -35.23 -0.38 -3.54 16 3 C 0.08 0.57 5.23 37.16 0.19 0.76 16 4 C -0.14 -0.84 6.07 -27.88 -0.17 -1.00 16 5 C 0.52 4.40 7.83 -10.99 -0.09 4.32 16 6 O -0.54 -6.77 15.98 5.55 0.09 -6.68 16 7 N -0.73 -4.92 5.17 -60.29 -0.31 -5.24 16 8 C 0.10 0.90 4.72 -4.04 -0.02 0.88 16 9 C 0.10 0.96 0.92 -88.80 -0.08 0.88 16 10 O -0.54 -5.38 13.09 -35.23 -0.46 -5.84 16 11 C -0.15 -1.60 5.83 -24.48 -0.14 -1.75 16 12 C 0.06 0.89 5.74 -2.19 -0.01 0.88 16 13 N -0.50 -8.23 4.86 -232.56 -1.13 -9.36 16 14 C 0.04 0.74 5.05 -4.98 -0.03 0.71 16 15 C 0.45 10.60 7.58 -10.99 -0.08 10.51 16 16 O -0.58 -15.62 14.61 5.55 0.08 -15.54 16 17 N -0.57 -14.47 5.29 -10.96 -0.06 -14.53 16 18 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 22 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.06 0.72 6.23 -2.84 -0.02 0.70 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.40 1.61 7.31 -40.82 -0.30 1.31 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.37 2.15 7.93 45.56 0.36 2.52 16 38 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 40 H 0.10 1.72 7.38 -51.93 -0.38 1.33 16 41 H 0.05 0.74 7.62 -51.93 -0.40 0.35 16 42 H 0.09 1.46 8.03 -51.93 -0.42 1.05 16 43 H 0.05 0.90 7.85 -51.93 -0.41 0.49 16 44 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.09 1.07 7.82 -51.93 -0.41 0.66 16 47 H 0.07 0.89 7.47 -51.93 -0.39 0.50 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -35.19 389.15 -6.98 -42.18 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.81 Total: 10.38 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 0.43 Total: 10.17 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.78 Total: -53.10 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.67 Total: -31.61 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.19 -6.98 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484197933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.856 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds