Wall clock time and date at job start Tue Mar 31 2020 04:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99660 * 2 1 4 4 C 1.53001 * 109.46900 * 269.99899 * 3 2 1 5 5 H 1.08999 * 109.47164 * 60.00014 * 4 3 2 6 6 O 1.42903 * 109.47171 * 299.99748 * 4 3 2 7 7 C 1.53003 * 109.47376 * 180.02562 * 4 3 2 8 8 N 1.46900 * 109.47407 * 184.99739 * 7 4 3 9 9 C 1.46902 * 110.99888 * 179.97438 * 8 7 4 10 10 C 1.50696 * 109.46722 * 180.02562 * 9 8 7 11 11 O 1.21298 * 120.00202 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99889 * 180.02562 * 10 9 8 13 13 C 1.37101 * 119.99834 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00344 * 359.97438 * 13 12 10 15 15 C 1.38954 * 119.99671 * 180.02562 * 13 12 10 16 16 N 1.31413 * 119.99942 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99837 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46936 * 60.00095 * 17 15 13 19 19 H 1.48499 * 109.46946 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47188 * 299.99828 * 17 15 13 21 21 C 1.34777 * 120.00357 * 179.97438 * 2 1 3 22 22 O 1.21275 * 120.00166 * 179.97438 * 21 2 1 23 23 C 1.50704 * 119.99765 * 0.02562 * 21 2 1 24 24 H 1.09001 * 110.27167 * 304.29044 * 23 21 2 25 25 C 1.54946 * 110.31506 * 66.38410 * 23 21 2 26 26 C 1.55411 * 100.89251 * 155.28660 * 25 23 21 27 27 C 1.54381 * 102.31150 * 325.99191 * 26 25 23 28 28 O 1.43234 * 107.58829 * 21.28603 * 27 26 25 29 29 H 1.08992 * 109.47184 * 90.00541 * 1 2 3 30 30 H 1.09003 * 109.46933 * 209.99932 * 1 2 3 31 31 H 1.09000 * 109.47158 * 330.00043 * 1 2 3 32 32 H 1.08999 * 109.47200 * 149.99935 * 3 2 1 33 33 H 1.08997 * 109.47487 * 29.99989 * 3 2 1 34 34 H 0.96700 * 114.00311 * 300.00378 * 6 4 3 35 35 H 1.09005 * 109.46682 * 304.99749 * 7 4 3 36 36 H 1.08999 * 109.47221 * 64.99915 * 7 4 3 37 37 H 1.00897 * 111.00248 * 303.95482 * 8 7 4 38 38 H 1.08994 * 109.47353 * 299.99985 * 9 8 7 39 39 H 1.08992 * 109.46815 * 60.00343 * 9 8 7 40 40 H 0.96995 * 119.99740 * 0.02562 * 12 10 9 41 41 H 0.96999 * 119.99954 * 179.97438 * 16 15 13 42 42 H 1.09002 * 111.12540 * 273.28510 * 25 23 21 43 43 H 1.09000 * 111.11900 * 37.44208 * 25 23 21 44 44 H 1.09003 * 110.88380 * 207.75275 * 26 25 23 45 45 H 1.09002 * 110.93351 * 84.25727 * 26 25 23 46 46 H 1.09000 * 109.83033 * 261.76923 * 27 26 25 47 47 H 1.09000 * 109.82921 * 140.79708 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.5000 1.8406 -1.9564 6 8 3.2248 0.7145 -2.1161 7 6 3.2179 3.0351 -1.4427 8 7 3.3582 3.5195 -2.8224 9 6 4.0895 4.7930 -2.8614 10 6 4.2128 5.2578 -4.2896 11 8 3.7387 4.5932 -5.1867 12 7 4.8509 6.4113 -4.5701 13 6 4.9627 6.8344 -5.8694 14 1 4.5398 6.2431 -6.6682 15 6 5.6210 8.0234 -6.1587 16 7 6.1360 8.7426 -5.1868 17 14 5.7740 8.5995 -7.9290 18 1 4.4191 8.7899 -8.5064 19 1 6.5148 9.8859 -7.9686 20 1 6.5102 7.5805 -8.7193 21 6 2.1390 -1.1672 0.0005 22 8 3.3517 -1.1671 0.0001 23 6 1.3855 -2.4723 0.0005 24 1 0.6974 -2.5112 0.8450 25 6 0.6129 -2.6474 -1.3311 26 6 0.4896 -4.1952 -1.3978 27 6 1.8105 -4.6590 -0.7468 28 8 2.3020 -3.5771 0.0530 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.1498 1.1385 0.5138 33 1 1.6084 2.0284 0.5138 34 1 4.0873 0.5460 -1.7126 35 1 2.6708 3.7709 -0.8531 36 1 4.2062 2.8838 -1.0085 37 1 3.8053 2.8275 -3.4049 38 1 3.5481 5.5407 -2.2819 39 1 5.0837 4.6542 -2.4369 40 1 5.2310 6.9421 -3.8528 41 1 6.5959 9.5724 -5.3887 42 1 -0.3683 -2.1754 -1.2811 43 1 1.1891 -2.2633 -2.1729 44 1 0.4260 -4.5358 -2.4313 45 1 -0.3690 -4.5426 -0.8232 46 1 2.5371 -4.9067 -1.5207 47 1 1.6268 -5.5301 -0.1179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486259091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:26 Heat of formation + Delta-G solvation = -158.097568 kcal Electronic energy + Delta-G solvation = -28243.489384 eV Core-core repulsion = 24040.638635 eV Total energy + Delta-G solvation = -4202.850749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.81031 -39.10743 -38.30339 -37.47132 -35.67908 -34.65619 -33.73883 -32.61317 -31.26422 -31.08928 -29.71781 -27.73169 -26.74872 -25.12525 -23.83397 -22.82571 -22.14805 -21.65382 -19.68839 -19.22152 -18.10298 -17.86915 -17.10900 -16.87839 -16.32536 -16.01258 -15.89645 -15.65138 -15.41493 -14.76746 -14.69875 -14.47860 -14.42021 -13.84732 -13.71636 -13.62474 -13.39023 -13.30756 -12.97424 -12.81477 -12.57574 -12.33898 -12.12160 -12.03064 -11.76996 -11.67825 -11.52437 -11.49039 -11.39082 -11.12169 -10.98554 -10.42435 -10.38382 -10.25668 -10.18560 -9.64394 -9.47650 -8.88783 -8.42068 -8.03972 -7.93363 -6.39353 -3.80079 2.33860 2.43049 3.22147 3.27355 3.32112 3.47099 3.89004 3.93597 4.04256 4.14291 4.28082 4.35183 4.42156 4.55729 4.61502 4.69928 4.77539 4.87530 4.91221 5.03919 5.07330 5.11092 5.16094 5.23171 5.24730 5.27539 5.29526 5.35939 5.42167 5.43235 5.62438 5.64354 5.80190 5.98028 6.02337 6.07271 6.28952 6.48747 7.01597 7.22070 7.57342 7.67013 7.73936 7.93194 8.08746 8.64080 9.20289 9.56811 10.08726 10.78383 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.001856 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.257091 B =15082.211141 C =15466.945649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.608 5.608 3 C 0.085 3.915 4 C 0.095 3.905 5 H 0.107 0.893 6 O -0.551 6.551 7 C 0.030 3.970 8 N -0.664 5.664 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.582 6.582 12 N -0.564 5.564 13 C -0.299 4.299 14 H 0.102 0.898 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.932 3.068 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.521 3.479 22 O -0.515 6.515 23 C 0.066 3.934 24 H 0.093 0.907 25 C -0.146 4.146 26 C -0.155 4.155 27 C 0.048 3.952 28 O -0.355 6.355 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.375 0.625 35 H 0.079 0.921 36 H 0.030 0.970 37 H 0.356 0.644 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.546 -21.175 16.096 29.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.343 5.343 3 C -0.039 4.039 4 C 0.034 3.966 5 H 0.125 0.875 6 O -0.356 6.356 7 C -0.101 4.101 8 N -0.298 5.298 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.466 6.466 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.120 0.880 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.759 3.241 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.308 3.692 22 O -0.389 6.389 23 C 0.005 3.995 24 H 0.111 0.889 25 C -0.184 4.184 26 C -0.192 4.192 27 C -0.028 4.028 28 O -0.273 6.273 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.223 0.777 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.177 0.823 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.035 -21.178 15.196 29.604 hybrid contribution 1.382 0.599 0.112 1.510 sum -12.653 -20.579 15.308 28.599 Atomic orbital electron populations 1.21972 0.79405 1.03274 1.02387 1.47565 1.06869 1.05534 1.74351 1.22243 0.98633 0.84900 0.98116 1.22361 0.96018 0.86474 0.91779 0.87471 1.86593 1.33350 1.59164 1.56468 1.22587 0.98929 0.96765 0.91839 1.60015 1.56230 1.05534 1.07993 1.21680 0.96597 0.92855 0.97109 1.19811 0.84166 0.83722 0.89686 1.90532 1.51794 1.56623 1.47610 1.41855 1.49380 1.19688 1.09186 1.19663 1.33652 1.05075 0.84495 0.87979 1.25266 0.96765 0.96216 0.99755 1.69606 1.37411 1.15274 1.32121 0.85906 0.78532 0.77747 0.81957 1.19893 1.20998 1.19922 1.20306 0.88073 0.84692 0.76145 1.90679 1.13709 1.86818 1.47729 1.22797 0.90795 0.86655 0.99212 0.88933 1.23330 1.01441 0.96629 0.96986 1.23151 0.98226 0.95116 1.02732 1.23218 0.95137 0.89968 0.94517 1.88532 1.45895 1.23403 1.69490 0.91961 0.91086 0.90569 0.89465 0.89286 0.77706 0.90305 0.95143 0.82311 0.89694 0.93954 0.77475 0.91853 0.88899 0.89170 0.89428 0.90196 0.90861 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 9.07 59.85 0.54 0.89 16 2 N -0.61 -5.17 2.83 -181.58 -0.51 -5.68 16 3 C 0.08 0.73 5.19 -4.04 -0.02 0.71 16 4 C 0.09 1.04 3.48 -26.73 -0.09 0.95 16 5 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 6 O -0.55 -7.43 11.67 -43.97 -0.51 -7.95 16 7 C 0.03 0.36 5.36 -3.82 -0.02 0.34 16 8 N -0.66 -11.17 6.12 -115.06 -0.70 -11.88 16 9 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 10 C 0.44 10.73 7.82 -10.99 -0.09 10.65 16 11 O -0.58 -16.35 15.78 5.54 0.09 -16.26 16 12 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 13 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 14 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 17 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 21 C 0.52 5.83 6.60 -10.98 -0.07 5.75 16 22 O -0.52 -7.83 14.92 -19.89 -0.30 -8.13 16 23 C 0.07 0.58 2.94 -26.85 -0.08 0.50 16 24 H 0.09 0.58 7.20 -51.93 -0.37 0.20 16 25 C -0.15 -0.95 5.82 -24.42 -0.14 -1.10 16 26 C -0.15 -0.81 7.02 -24.73 -0.17 -0.98 16 27 C 0.05 0.36 7.80 37.88 0.30 0.65 16 28 O -0.35 -3.99 10.61 -54.57 -0.58 -4.57 16 29 H 0.06 0.29 7.72 -51.93 -0.40 -0.11 16 30 H 0.07 0.21 6.02 -51.93 -0.31 -0.10 16 31 H 0.08 0.26 7.89 -51.93 -0.41 -0.15 16 32 H 0.09 0.85 7.42 -51.93 -0.39 0.47 16 33 H 0.09 0.55 7.89 -51.93 -0.41 0.14 16 34 H 0.38 4.71 8.45 45.56 0.38 5.10 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.36 6.58 7.99 -39.29 -0.31 6.26 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 41 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.09 0.38 6.66 -51.93 -0.35 0.04 16 43 H 0.09 0.79 8.05 -51.93 -0.42 0.37 16 44 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -36.51 385.51 -7.81 -44.32 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -6.62 Total: 15.74 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -0.12 Total: 11.08 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.55 Total: -56.37 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -1.30 Total: -36.91 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.51 -7.81 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486259091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.780 kcal (2) G-P(sol) polarization free energy of solvation -36.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds