Wall clock time and date at job start Tue Mar 31 2020 04:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99878 * 2 1 4 4 C 1.53001 * 109.47235 * 270.00043 * 3 2 1 5 5 H 1.08999 * 109.47442 * 305.00476 * 4 3 2 6 6 O 1.42906 * 109.46860 * 65.00415 * 4 3 2 7 7 C 1.53000 * 109.47165 * 184.99923 * 4 3 2 8 8 N 1.46908 * 109.47196 * 180.02562 * 7 4 3 9 9 C 1.46894 * 110.99892 * 180.02562 * 8 7 4 10 10 C 1.50702 * 109.46931 * 180.02562 * 9 8 7 11 11 O 1.21296 * 119.99992 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00112 * 179.97438 * 10 9 8 13 13 C 1.37100 * 120.00237 * 179.97438 * 12 10 9 14 14 H 1.08007 * 119.99701 * 0.02562 * 13 12 10 15 15 C 1.38949 * 120.00182 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00103 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00079 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46972 * 90.00099 * 17 15 13 19 19 H 1.48492 * 109.47208 * 210.00466 * 17 15 13 20 20 H 1.48505 * 109.47233 * 330.00386 * 17 15 13 21 21 C 1.34773 * 120.00067 * 180.02562 * 2 1 3 22 22 O 1.21277 * 120.00304 * 185.20361 * 21 2 1 23 23 C 1.50702 * 119.99849 * 4.93152 * 21 2 1 24 24 H 1.09001 * 110.27166 * 311.95793 * 23 21 2 25 25 C 1.54946 * 110.31317 * 74.05346 * 23 21 2 26 26 C 1.55409 * 100.89281 * 155.28669 * 25 23 21 27 27 C 1.54379 * 102.31262 * 325.99104 * 26 25 23 28 28 O 1.43235 * 107.58913 * 21.28551 * 27 26 25 29 29 H 1.09001 * 109.47006 * 264.79854 * 1 2 3 30 30 H 1.09004 * 109.47578 * 24.79368 * 1 2 3 31 31 H 1.08999 * 109.47646 * 144.79750 * 1 2 3 32 32 H 1.08996 * 109.47481 * 30.00511 * 3 2 1 33 33 H 1.09004 * 109.47088 * 150.00671 * 3 2 1 34 34 H 0.96699 * 113.99951 * 59.99797 * 6 4 3 35 35 H 1.08994 * 109.47601 * 300.00154 * 7 4 3 36 36 H 1.08995 * 109.47005 * 60.00817 * 7 4 3 37 37 H 1.00901 * 110.99593 * 303.96111 * 8 7 4 38 38 H 1.08998 * 109.47401 * 299.99647 * 9 8 7 39 39 H 1.08992 * 109.47418 * 60.00343 * 9 8 7 40 40 H 0.97000 * 120.00159 * 0.02562 * 12 10 9 41 41 H 0.96999 * 120.00046 * 179.97438 * 16 15 13 42 42 H 1.08992 * 111.12606 * 273.27958 * 25 23 21 43 43 H 1.08995 * 111.12397 * 37.44278 * 25 23 21 44 44 H 1.09005 * 110.88631 * 207.75230 * 26 25 23 45 45 H 1.08998 * 110.93417 * 84.25437 * 26 25 23 46 46 H 1.09002 * 109.83375 * 261.77415 * 27 26 25 47 47 H 1.09001 * 109.83291 * 140.79454 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 2.9641 0.9132 -1.9816 6 8 1.2059 1.9936 -2.0813 7 6 3.3237 2.9681 -1.4443 8 7 3.5680 3.3926 -2.8293 9 6 4.4037 4.6000 -2.8702 10 6 4.6318 5.0047 -4.3039 11 8 4.1456 4.3518 -5.2030 12 7 5.3752 6.0926 -4.5869 13 6 5.5832 6.4605 -5.8911 14 1 5.1509 5.8786 -6.6918 15 6 6.3501 7.5819 -6.1829 16 7 6.8765 8.2895 -5.2087 17 14 6.6328 8.0835 -7.9599 18 1 5.5577 9.0139 -8.3886 19 1 7.9495 8.7595 -8.0799 20 1 6.6159 6.8758 -8.8239 21 6 2.1389 -1.1672 -0.0005 22 8 3.3479 -1.1694 0.0947 23 6 1.3895 -2.4698 -0.1133 24 1 0.5542 -2.4868 0.5867 25 6 0.8810 -2.6741 -1.5626 26 6 0.7613 -4.2226 -1.6163 27 6 1.9321 -4.6747 -0.7173 28 8 2.2717 -3.5757 0.1363 29 1 -0.3633 -0.0932 1.0235 30 1 -0.3634 0.9329 -0.4310 31 1 -0.3634 -0.8397 -0.5924 32 1 1.6085 2.0283 0.5139 33 1 3.1499 1.1384 0.5137 34 1 0.6954 2.6950 -1.6541 35 1 2.8120 3.7654 -0.9053 36 1 4.2745 2.7521 -0.9571 37 1 3.9832 2.6473 -3.3680 38 1 3.9001 5.4086 -2.3406 39 1 5.3621 4.3948 -2.3934 40 1 5.7638 6.6150 -3.8678 41 1 7.4121 9.0721 -5.4124 42 1 -0.0886 -2.1983 -1.7094 43 1 1.6084 -2.3116 -2.2889 44 1 0.8914 -4.5873 -2.6353 45 1 -0.1928 -4.5540 -1.2065 46 1 2.7900 -4.9425 -1.3341 47 1 1.6268 -5.5302 -0.1148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486259094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:48 Heat of formation + Delta-G solvation = -155.953488 kcal Electronic energy + Delta-G solvation = -28150.732343 eV Core-core repulsion = 23947.974568 eV Total energy + Delta-G solvation = -4202.757774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -40.83741 -39.12554 -38.32142 -37.60067 -35.60881 -34.70652 -33.75392 -32.64293 -31.30334 -31.11606 -29.78022 -27.69981 -26.69143 -25.16084 -23.82674 -22.85276 -22.20183 -21.79355 -19.69661 -19.22111 -18.10036 -17.86968 -17.12338 -16.89490 -16.15971 -16.14671 -15.97942 -15.63623 -15.42108 -14.86028 -14.67645 -14.59698 -14.39998 -13.87451 -13.81099 -13.62654 -13.39320 -13.26324 -13.04074 -12.85265 -12.50398 -12.36280 -12.12530 -12.03910 -11.82273 -11.69532 -11.52037 -11.47173 -11.41099 -11.14426 -11.01933 -10.45430 -10.37661 -10.29866 -10.19522 -9.68697 -9.48714 -8.88035 -8.41753 -8.02372 -7.93301 -6.39601 -3.80280 2.24212 2.40703 3.19634 3.27922 3.34151 3.47994 3.87602 3.93239 4.00699 4.11303 4.23625 4.33468 4.43255 4.55455 4.61536 4.67438 4.74690 4.78880 4.88241 4.97449 5.06521 5.13172 5.16444 5.21821 5.26155 5.30156 5.33428 5.37522 5.42834 5.44990 5.58826 5.61025 5.81138 5.88683 5.98453 6.11779 6.28359 6.46523 6.97664 7.20170 7.57252 7.57738 7.71676 7.85681 8.08724 8.63857 9.20254 9.56717 10.08548 10.78222 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.001888 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.514402 B =14825.283081 C =15231.054126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.606 5.606 3 C 0.085 3.915 4 C 0.098 3.902 5 H 0.098 0.902 6 O -0.541 6.541 7 C 0.029 3.971 8 N -0.658 5.658 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.565 5.565 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.513 3.487 22 O -0.518 6.518 23 C 0.066 3.934 24 H 0.094 0.906 25 C -0.145 4.145 26 C -0.154 4.154 27 C 0.048 3.952 28 O -0.356 6.356 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.369 0.631 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.350 0.650 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.561 -19.854 15.398 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.341 5.341 3 C -0.039 4.039 4 C 0.037 3.963 5 H 0.116 0.884 6 O -0.345 6.345 7 C -0.102 4.102 8 N -0.290 5.290 9 C -0.083 4.083 10 C 0.227 3.773 11 O -0.465 6.465 12 N -0.202 5.202 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.194 1.194 21 C 0.300 3.700 22 O -0.392 6.392 23 C 0.005 3.995 24 H 0.111 0.889 25 C -0.182 4.182 26 C -0.192 4.192 27 C -0.028 4.028 28 O -0.274 6.274 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.215 0.785 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.170 0.830 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.319 -20.273 14.529 29.271 hybrid contribution 0.938 0.839 0.141 1.267 sum -14.381 -19.434 14.670 28.279 Atomic orbital electron populations 1.21971 0.79053 1.04357 1.01484 1.47586 1.07192 1.05325 1.74011 1.22220 0.98878 0.84890 0.97894 1.22291 0.85512 0.96416 0.92113 0.88402 1.86662 1.31623 1.59030 1.57160 1.22596 0.98875 0.97162 0.91581 1.59993 1.51746 1.07627 1.09664 1.21689 0.95583 0.94015 0.96973 1.19805 0.83933 0.83885 0.89724 1.90533 1.53280 1.55048 1.47634 1.41863 1.45192 1.24294 1.08814 1.19709 1.29433 1.09607 0.84046 0.87931 1.25266 0.96747 0.96252 0.99775 1.69614 1.34595 1.18237 1.31961 0.85846 0.77524 0.78812 0.82037 1.20403 1.20960 1.19431 1.20488 0.88070 0.84944 0.76520 1.90734 1.13990 1.86921 1.47595 1.22821 0.92211 0.86487 0.97964 0.88853 1.23295 1.03162 0.96637 0.95141 1.23153 0.99371 0.94972 1.01670 1.23225 0.97513 0.89615 0.92495 1.88527 1.56061 1.22288 1.60567 0.92625 0.89854 0.91042 0.89727 0.88741 0.78484 0.90691 0.94493 0.83030 0.89680 0.93954 0.77481 0.91907 0.88647 0.89427 0.89346 0.90077 0.90839 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 9.72 59.85 0.58 0.96 16 2 N -0.61 -5.28 2.84 -181.57 -0.52 -5.79 16 3 C 0.08 0.74 5.08 -4.04 -0.02 0.72 16 4 C 0.10 1.06 3.42 -26.73 -0.09 0.97 16 5 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 6 O -0.54 -6.02 12.13 -35.23 -0.43 -6.45 16 7 C 0.03 0.34 5.35 -3.82 -0.02 0.32 16 8 N -0.66 -10.96 5.99 -115.06 -0.69 -11.65 16 9 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 10 C 0.44 10.71 7.82 -10.99 -0.09 10.62 16 11 O -0.58 -16.29 15.78 5.54 0.09 -16.21 16 12 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 13 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 14 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 16 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 17 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.51 5.91 7.00 -10.99 -0.08 5.84 16 22 O -0.52 -8.31 16.13 -13.59 -0.22 -8.53 16 23 C 0.07 0.59 2.91 -26.86 -0.08 0.51 16 24 H 0.09 0.59 7.58 -51.93 -0.39 0.20 16 25 C -0.14 -0.98 6.07 -24.43 -0.15 -1.13 16 26 C -0.15 -0.81 7.02 -24.73 -0.17 -0.99 16 27 C 0.05 0.36 7.80 37.88 0.30 0.65 16 28 O -0.36 -4.02 10.62 -54.38 -0.58 -4.60 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.37 7.22 -51.93 -0.37 -0.01 16 31 H 0.07 0.29 4.83 -51.93 -0.25 0.04 16 32 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 33 H 0.09 0.97 7.36 -51.93 -0.38 0.58 16 34 H 0.37 2.83 9.04 45.56 0.41 3.25 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.35 6.32 8.43 -39.29 -0.33 5.99 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.10 0.45 6.43 -51.93 -0.33 0.11 16 43 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 44 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 388.03 15.07 5.85 5.85 Total: -1.00 -37.24 388.03 -7.49 -44.73 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -6.55 Total: 13.93 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -0.09 Total: 11.20 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.54 Total: -56.25 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -1.14 Total: -35.79 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.24 -7.49 -44.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486259094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.221 kcal (2) G-P(sol) polarization free energy of solvation -37.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds