Wall clock time and date at job start Tue Mar 31 2020 05:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.47343 * 2 1 4 4 C 1.47015 * 111.00176 * 293.95259 * 3 2 1 5 5 C 1.53096 * 109.25812 * 182.38992 * 4 3 2 6 6 O 1.43012 * 109.25861 * 303.15028 * 5 4 3 7 7 C 1.43012 * 113.73796 * 58.67132 * 6 5 4 8 8 H 1.09010 * 109.50477 * 61.30705 * 7 6 5 9 9 C 1.50703 * 109.50863 * 181.38958 * 7 6 5 10 10 O 1.21283 * 119.99889 * 5.00263 * 9 7 6 11 11 N 1.34779 * 120.00044 * 184.99869 * 9 7 6 12 12 C 1.46502 * 119.99957 * 0.02562 * 11 9 7 13 13 C 1.46498 * 119.99673 * 180.02562 * 11 9 7 14 14 C 1.52991 * 109.47342 * 270.00040 * 13 11 9 15 15 H 1.09003 * 109.47242 * 60.00736 * 14 13 11 16 16 O 1.42901 * 109.47228 * 300.00279 * 14 13 11 17 17 C 1.53007 * 109.47409 * 180.02562 * 14 13 11 18 18 N 1.46491 * 109.47368 * 185.00067 * 17 14 13 19 19 C 1.46508 * 120.00342 * 270.00246 * 18 17 14 20 20 C 1.36942 * 120.00104 * 90.00095 * 18 17 14 21 21 H 1.07996 * 119.99409 * 22.68426 * 20 18 17 22 22 C 1.38809 * 120.00094 * 202.68070 * 20 18 17 23 23 N 1.31618 * 120.00382 * 11.48984 * 22 20 18 24 24 Si 1.86805 * 119.99749 * 191.49473 * 22 20 18 25 25 H 1.48499 * 109.47251 * 59.99983 * 24 22 20 26 26 H 1.48501 * 109.46851 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47011 * 299.99887 * 24 22 20 28 28 C 1.47016 * 110.99824 * 57.58598 * 3 2 1 29 29 H 1.09002 * 109.46438 * 59.99924 * 1 2 3 30 30 H 1.09002 * 109.47219 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47029 * 299.99958 * 1 2 3 32 32 H 1.09004 * 109.47035 * 239.99997 * 2 1 3 33 33 H 1.08997 * 109.47117 * 120.00265 * 2 1 3 34 34 H 1.08999 * 109.50601 * 62.45558 * 4 3 2 35 35 H 1.08996 * 109.54393 * 302.34955 * 4 3 2 36 36 H 1.09002 * 109.50299 * 183.21745 * 5 4 3 37 37 H 1.08997 * 109.50641 * 63.09334 * 5 4 3 38 38 H 1.09000 * 109.47211 * 269.99890 * 12 11 9 39 39 H 1.08995 * 109.47143 * 29.99974 * 12 11 9 40 40 H 1.08997 * 109.46591 * 149.99941 * 12 11 9 41 41 H 1.09003 * 109.47315 * 30.00607 * 13 11 9 42 42 H 1.09006 * 109.46846 * 150.00258 * 13 11 9 43 43 H 0.96696 * 114.00229 * 299.99281 * 16 14 13 44 44 H 1.08995 * 109.47003 * 305.00875 * 17 14 13 45 45 H 1.09002 * 109.46681 * 64.99881 * 17 14 13 46 46 H 1.08997 * 109.47271 * 93.92908 * 19 18 17 47 47 H 1.08998 * 109.46990 * 213.93586 * 19 18 17 48 48 H 1.09002 * 109.46520 * 333.93372 * 19 18 17 49 49 H 0.96997 * 120.00202 * 180.02562 * 23 22 20 50 50 H 1.08999 * 109.50527 * 57.67265 * 28 3 2 51 51 H 1.08994 * 109.51081 * 297.54219 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6701 2.0675 -1.2543 5 6 2.2494 3.4845 -1.2366 6 8 1.7596 4.1800 -0.0870 7 6 2.0828 3.5433 1.1521 8 1 3.1659 3.4936 1.2642 9 6 1.4947 4.3338 2.2925 10 8 0.7857 5.2910 2.0647 11 7 1.7566 3.9769 3.5655 12 6 2.6135 2.8209 3.8406 13 6 1.1845 4.7450 4.6740 14 6 2.1438 5.8717 5.0625 15 1 2.2979 6.5289 4.2066 16 8 3.3958 5.3134 5.4660 17 6 1.5465 6.6736 6.2206 18 7 2.4067 7.8226 6.5139 19 6 3.4946 7.6939 7.4866 20 6 2.1939 9.0170 5.8788 21 1 1.2232 9.2414 5.4619 22 6 3.2257 9.9392 5.7709 23 7 4.4578 9.5865 6.0708 24 14 2.8656 11.6811 5.2002 25 1 1.9087 12.3214 6.1381 26 1 4.1276 12.4632 5.1709 27 1 2.2742 11.6436 3.8386 28 6 1.5017 2.1269 1.1587 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.5856 2.1188 -1.3506 35 1 2.0846 1.5153 -2.0977 36 1 1.9445 4.0136 -2.1395 37 1 3.3373 3.4324 -1.1945 38 1 2.0006 1.9219 3.9071 39 1 3.3394 2.7069 3.0357 40 1 3.1378 2.9737 4.7839 41 1 0.2294 5.1708 4.3662 42 1 1.0303 4.0879 5.5299 43 1 3.3343 4.7170 6.2246 44 1 0.5524 7.0249 5.9446 45 1 1.4752 6.0384 7.1035 46 1 4.4193 7.4438 6.9666 47 1 3.6203 8.6372 8.0181 48 1 3.2536 6.9048 8.1989 49 1 5.1787 10.2310 5.9958 50 1 1.7940 1.6178 2.0771 51 1 0.4146 2.1793 1.1010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486359430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:44 Heat of formation + Delta-G solvation = -79.664771 kcal Electronic energy + Delta-G solvation = -30236.612149 eV Core-core repulsion = 26172.995596 eV Total energy + Delta-G solvation = -4063.616553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.69095 -39.12778 -37.31987 -36.49752 -35.27376 -34.46679 -32.01932 -31.24580 -31.05556 -29.57011 -27.27714 -26.91569 -25.85097 -25.51304 -24.38399 -23.24351 -21.91211 -20.49969 -20.34432 -19.41986 -17.47983 -16.90124 -16.66788 -16.40450 -16.00795 -15.80461 -15.48864 -15.26565 -14.94448 -14.70808 -14.46888 -14.43210 -14.21992 -13.79634 -13.51272 -13.20182 -13.12987 -12.87132 -12.78888 -12.66855 -12.52592 -12.26816 -11.92174 -11.77226 -11.63758 -11.41082 -11.26183 -11.04183 -10.90653 -10.77724 -10.64469 -10.36067 -10.23951 -9.97713 -9.91796 -9.89645 -9.71560 -9.46644 -8.77464 -8.51449 -8.30971 -6.60549 -5.61832 -3.07375 2.62532 2.76003 3.40691 3.47595 3.51498 3.53287 3.78349 4.37324 4.50703 4.54312 4.58979 4.65594 4.74294 4.81414 4.89630 4.95533 4.99039 5.05311 5.12067 5.18243 5.22947 5.33015 5.37152 5.38922 5.42509 5.50914 5.52354 5.56659 5.57552 5.72605 5.79628 5.90048 5.98193 6.04444 6.12201 6.48548 6.53184 6.53996 6.63454 6.84525 6.88131 6.95483 7.41979 7.49042 7.87455 7.94644 8.26870 8.33792 8.50178 9.34249 9.96846 10.45361 11.42772 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.018563 B = 0.002851 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.975881 B = 9820.379614 C =10660.874771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.051 3.949 3 N -0.533 5.533 4 C 0.012 3.988 5 C 0.061 3.939 6 O -0.354 6.354 7 C 0.080 3.920 8 H 0.092 0.908 9 C 0.518 3.482 10 O -0.512 6.512 11 N -0.602 5.602 12 C 0.077 3.923 13 C 0.084 3.916 14 C 0.070 3.930 15 H 0.101 0.899 16 O -0.544 6.544 17 C 0.126 3.874 18 N -0.592 5.592 19 C 0.170 3.830 20 C -0.258 4.258 21 H 0.067 0.933 22 C 0.003 3.997 23 N -0.904 5.904 24 Si 0.903 3.097 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.021 3.979 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.352 0.648 44 H 0.051 0.949 45 H 0.039 0.961 46 H 0.034 0.966 47 H 0.040 0.960 48 H -0.009 1.009 49 H 0.252 0.748 50 H 0.097 0.903 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.984 -23.909 -9.760 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.077 4.077 3 N -0.257 5.257 4 C -0.116 4.116 5 C -0.016 4.016 6 O -0.272 6.272 7 C 0.018 3.982 8 H 0.110 0.890 9 C 0.304 3.696 10 O -0.386 6.386 11 N -0.337 5.337 12 C -0.066 4.066 13 C -0.039 4.039 14 C 0.007 3.993 15 H 0.119 0.881 16 O -0.346 6.346 17 C -0.003 4.003 18 N -0.314 5.314 19 C 0.026 3.974 20 C -0.387 4.387 21 H 0.085 0.915 22 C -0.195 4.195 23 N -0.548 5.548 24 Si 0.733 3.267 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.208 1.208 28 C -0.107 4.107 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.196 0.804 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.059 0.941 48 H 0.009 0.991 49 H 0.062 0.938 50 H 0.115 0.885 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.570 -22.723 -10.345 25.381 hybrid contribution -0.954 0.265 -0.079 0.993 sum -5.524 -22.457 -10.423 25.367 Atomic orbital electron populations 1.22456 0.97997 1.02568 1.02404 1.22186 0.93111 0.89226 1.03192 1.62468 1.58750 1.02380 1.02137 1.22872 0.99795 0.96105 0.92832 1.22752 0.98808 0.91054 0.88972 1.88153 1.78014 1.48481 1.12538 1.21922 1.00077 0.90782 0.85388 0.89017 1.19987 0.81421 0.84934 0.83285 1.90752 1.36803 1.27319 1.83755 1.47634 1.50053 1.30797 1.05227 1.21944 0.93953 0.87140 1.03536 1.22426 0.98885 0.94584 0.88021 1.23343 0.83610 0.92228 1.00161 0.88077 1.86729 1.31290 1.65304 1.51302 1.21436 0.94873 0.89897 0.94053 1.43848 1.35324 1.06508 1.45717 1.20762 0.90712 0.96608 0.89365 1.19169 0.95014 0.92282 1.32260 0.91480 1.25040 0.94954 0.99200 1.00318 1.70075 0.98518 1.33432 1.52814 0.86350 0.76843 0.84650 0.78814 1.21114 1.21656 1.20849 1.22859 0.98899 0.93531 0.95419 0.92408 0.91804 0.92208 0.90336 0.90240 0.93374 0.89399 0.87867 0.91969 0.93002 0.91050 0.90037 0.89279 0.90653 0.80355 0.93037 0.94282 0.94760 0.94121 0.99060 0.93827 0.88458 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.26 9.20 37.16 0.34 -0.92 16 2 C 0.05 0.33 6.10 -3.82 -0.02 0.30 16 3 N -0.53 -4.58 4.94 -234.31 -1.16 -5.74 16 4 C 0.01 0.10 5.33 -3.71 -0.02 0.08 16 5 C 0.06 0.62 7.01 37.21 0.26 0.88 16 6 O -0.35 -5.25 10.01 -55.06 -0.55 -5.80 16 7 C 0.08 1.05 2.40 -27.83 -0.07 0.99 16 8 H 0.09 1.14 7.13 -51.92 -0.37 0.77 16 9 C 0.52 8.47 7.10 -10.98 -0.08 8.39 16 10 O -0.51 -10.83 16.09 -14.27 -0.23 -11.06 16 11 N -0.60 -8.27 2.80 -181.57 -0.51 -8.77 16 12 C 0.08 0.73 8.67 59.85 0.52 1.25 16 13 C 0.08 1.23 5.10 -4.05 -0.02 1.20 16 14 C 0.07 1.33 3.48 -26.73 -0.09 1.23 16 15 H 0.10 2.48 8.14 -51.93 -0.42 2.06 16 16 O -0.54 -10.07 11.61 -35.23 -0.41 -10.48 16 17 C 0.13 2.58 5.37 -4.04 -0.02 2.55 16 18 N -0.59 -15.35 2.89 -181.12 -0.52 -15.87 16 19 C 0.17 4.31 8.61 59.85 0.52 4.83 16 20 C -0.26 -7.43 9.67 -15.06 -0.15 -7.57 16 21 H 0.07 1.91 7.85 -52.49 -0.41 1.49 16 22 C 0.00 0.10 5.12 -17.43 -0.09 0.01 16 23 N -0.90 -27.53 10.62 55.49 0.59 -26.94 16 24 Si 0.90 23.00 29.57 -169.99 -5.03 17.97 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 28 C 0.02 0.21 4.11 -3.71 -0.02 0.19 16 29 H 0.06 0.40 6.61 -51.93 -0.34 0.06 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.44 6.42 -51.93 -0.33 0.11 16 32 H 0.08 0.43 8.11 -51.93 -0.42 0.01 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.43 6.59 -51.93 -0.34 0.09 16 35 H 0.09 0.56 8.12 -51.93 -0.42 0.14 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.36 7.08 -51.93 -0.37 0.00 16 39 H 0.07 0.64 6.06 -51.93 -0.31 0.32 16 40 H 0.08 0.74 6.88 -51.93 -0.36 0.38 16 41 H 0.09 1.42 7.42 -51.93 -0.39 1.03 16 42 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 43 H 0.35 4.92 8.79 45.56 0.40 5.32 16 44 H 0.05 1.04 8.03 -51.93 -0.42 0.62 16 45 H 0.04 0.68 7.87 -51.93 -0.41 0.27 16 46 H 0.03 0.95 7.43 -51.93 -0.39 0.57 16 47 H 0.04 1.11 7.20 -51.93 -0.37 0.74 16 48 H -0.01 -0.20 7.85 -51.93 -0.41 -0.61 16 49 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.10 0.80 5.22 -51.93 -0.27 0.52 16 51 H 0.05 0.58 6.40 -51.93 -0.33 0.25 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -36.81 391.24 -8.79 -45.59 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.93 Total: 1.78 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 1.06 Total: 13.42 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -1.60 Total: -57.33 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.19 Total: -27.34 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.03 Total: 17.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.81 -8.79 -45.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486359430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.071 kcal (2) G-P(sol) polarization free energy of solvation -36.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds