Wall clock time and date at job start Tue Mar 31 2020 05:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.46840 * 2 1 4 4 C 1.47010 * 111.00029 * 293.95324 * 3 2 1 5 5 C 1.53102 * 109.26094 * 182.39511 * 4 3 2 6 6 O 1.43017 * 109.25379 * 303.15368 * 5 4 3 7 7 C 1.43014 * 113.73926 * 58.67180 * 6 5 4 8 8 H 1.08996 * 109.50937 * 61.30366 * 7 6 5 9 9 C 1.50700 * 109.50696 * 181.39168 * 7 6 5 10 10 O 1.21285 * 120.00016 * 4.99561 * 9 7 6 11 11 N 1.34778 * 120.00244 * 184.99719 * 9 7 6 12 12 C 1.46504 * 119.99941 * 0.02562 * 11 9 7 13 13 C 1.46501 * 120.00367 * 179.97438 * 11 9 7 14 14 C 1.52996 * 109.47165 * 89.99709 * 13 11 9 15 15 H 1.08998 * 109.47185 * 305.00504 * 14 13 11 16 16 O 1.42902 * 109.46695 * 65.00258 * 14 13 11 17 17 C 1.52996 * 109.47218 * 184.99958 * 14 13 11 18 18 N 1.46503 * 109.47050 * 180.02562 * 17 14 13 19 19 C 1.46505 * 120.00200 * 270.00230 * 18 17 14 20 20 C 1.36939 * 119.99732 * 90.00567 * 18 17 14 21 21 H 1.07997 * 120.00016 * 22.32986 * 20 18 17 22 22 C 1.38814 * 119.99614 * 202.32822 * 20 18 17 23 23 N 1.31617 * 120.00023 * 11.36297 * 22 20 18 24 24 Si 1.86801 * 119.99659 * 191.36472 * 22 20 18 25 25 H 1.48492 * 109.47467 * 90.00135 * 24 22 20 26 26 H 1.48504 * 109.46690 * 209.99882 * 24 22 20 27 27 H 1.48500 * 109.47052 * 329.99826 * 24 22 20 28 28 C 1.47015 * 111.00304 * 57.59313 * 3 2 1 29 29 H 1.08994 * 109.47747 * 59.99839 * 1 2 3 30 30 H 1.08998 * 109.47385 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46852 * 299.99512 * 1 2 3 32 32 H 1.08995 * 109.46993 * 240.00220 * 2 1 3 33 33 H 1.08996 * 109.47274 * 119.99935 * 2 1 3 34 34 H 1.09003 * 109.50861 * 62.46264 * 4 3 2 35 35 H 1.09000 * 109.54704 * 302.34817 * 4 3 2 36 36 H 1.08991 * 109.50838 * 183.21881 * 5 4 3 37 37 H 1.08999 * 109.50413 * 63.08674 * 5 4 3 38 38 H 1.09001 * 109.47052 * 270.00403 * 12 11 9 39 39 H 1.09003 * 109.46909 * 29.99998 * 12 11 9 40 40 H 1.08992 * 109.47312 * 149.99581 * 12 11 9 41 41 H 1.09004 * 109.46552 * 329.99845 * 13 11 9 42 42 H 1.08993 * 109.47009 * 210.00476 * 13 11 9 43 43 H 0.96697 * 114.00012 * 60.00127 * 16 14 13 44 44 H 1.08998 * 109.47488 * 300.00359 * 17 14 13 45 45 H 1.09005 * 109.46767 * 60.00631 * 17 14 13 46 46 H 1.08999 * 109.47142 * 94.21390 * 19 18 17 47 47 H 1.08999 * 109.47142 * 214.21699 * 19 18 17 48 48 H 1.08998 * 109.46966 * 334.21307 * 19 18 17 49 49 H 0.97006 * 120.00022 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.50375 * 57.66719 * 28 3 2 51 51 H 1.09001 * 109.50242 * 297.54223 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6698 2.0674 -1.2543 5 6 2.2491 3.4845 -1.2367 6 8 1.7594 4.1800 -0.0870 7 6 2.0827 3.5434 1.1521 8 1 3.1658 3.4937 1.2640 9 6 1.4947 4.3338 2.2924 10 8 0.7856 5.2910 2.0647 11 7 1.7567 3.9770 3.5655 12 6 2.6136 2.8210 3.8406 13 6 1.1854 4.7457 4.6741 14 6 -0.1726 4.1549 5.0580 15 1 -0.8148 4.1184 4.1780 16 8 0.0104 2.8331 5.5692 17 6 -0.8252 5.0304 6.1296 18 7 -2.1253 4.4643 6.4976 19 6 -3.3331 4.8735 5.7764 20 6 -2.2117 3.5526 7.5158 21 1 -1.4399 3.5109 8.2701 22 6 -3.2912 2.6822 7.5782 23 7 -4.1101 2.5748 6.5535 24 14 -3.5815 1.6632 9.1167 25 1 -4.4536 2.4173 10.0526 26 1 -4.2408 0.3851 8.7467 27 1 -2.2808 1.3773 9.7738 28 6 1.5017 2.1269 1.1587 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5853 2.1188 -1.3505 35 1 2.0844 1.5153 -2.0977 36 1 1.9442 4.0136 -2.1395 37 1 3.3371 3.4324 -1.1946 38 1 2.0008 1.9221 3.9071 39 1 3.3396 2.7072 3.0356 40 1 3.1381 2.9739 4.7838 41 1 1.0566 5.7839 4.3679 42 1 1.8569 4.7005 5.5315 43 1 0.5728 2.7895 6.3546 44 1 -0.1830 5.0669 7.0096 45 1 -0.9648 6.0386 5.7396 46 1 -3.5320 4.1671 4.9705 47 1 -4.1791 4.8885 6.4636 48 1 -3.1868 5.8696 5.3586 49 1 -4.8643 1.9663 6.5970 50 1 1.7941 1.6178 2.0771 51 1 0.4145 2.1792 1.1011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486359432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:53 Heat of formation + Delta-G solvation = -78.908007 kcal Electronic energy + Delta-G solvation = -30608.003301 eV Core-core repulsion = 26544.419564 eV Total energy + Delta-G solvation = -4063.583737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.67138 -39.09336 -37.25268 -36.44057 -35.29170 -34.41059 -31.98207 -31.24730 -30.92908 -29.47980 -27.19913 -26.90151 -25.88642 -25.49404 -24.35932 -23.15075 -21.96412 -20.40613 -20.26386 -19.39646 -17.45302 -16.97783 -16.65567 -16.36380 -15.99912 -15.77368 -15.27862 -15.17143 -14.95986 -14.65576 -14.53695 -14.30606 -14.05768 -13.73996 -13.47435 -13.25176 -13.17414 -12.75972 -12.72297 -12.61540 -12.45331 -12.08623 -11.91230 -11.80825 -11.61282 -11.35767 -11.11284 -11.09399 -10.85878 -10.82655 -10.58800 -10.43340 -10.21961 -9.96031 -9.91679 -9.82916 -9.68942 -9.47013 -8.67176 -8.48253 -8.33757 -6.64193 -5.61322 -3.05765 2.59408 2.74034 3.42801 3.47952 3.50101 3.50630 3.78214 4.43379 4.56876 4.57818 4.61081 4.76170 4.80012 4.91418 4.98599 5.07034 5.07473 5.12515 5.17824 5.25547 5.28739 5.37276 5.43654 5.46461 5.51954 5.58305 5.62204 5.66573 5.70992 5.77718 5.84799 5.98915 6.02725 6.06135 6.13758 6.48472 6.58814 6.59594 6.64419 6.83632 6.86046 6.90894 7.39929 7.45823 7.80668 7.88658 8.23445 8.44275 8.52447 9.32604 9.95629 10.44984 11.44520 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.003280 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.936489 B = 8535.310622 C = 9343.744492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.052 3.948 3 N -0.533 5.533 4 C 0.010 3.990 5 C 0.063 3.937 6 O -0.356 6.356 7 C 0.082 3.918 8 H 0.089 0.911 9 C 0.518 3.482 10 O -0.517 6.517 11 N -0.602 5.602 12 C 0.076 3.924 13 C 0.083 3.917 14 C 0.073 3.927 15 H 0.088 0.912 16 O -0.535 6.535 17 C 0.124 3.876 18 N -0.592 5.592 19 C 0.164 3.836 20 C -0.241 4.241 21 H 0.066 0.934 22 C 0.002 3.998 23 N -0.908 5.908 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.281 1.281 28 C 0.019 3.981 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.357 0.643 44 H 0.046 0.954 45 H 0.045 0.955 46 H 0.027 0.973 47 H 0.045 0.955 48 H -0.004 1.004 49 H 0.250 0.750 50 H 0.100 0.900 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.511 -2.430 -13.279 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.076 4.076 3 N -0.258 5.258 4 C -0.118 4.118 5 C -0.014 4.014 6 O -0.274 6.274 7 C 0.020 3.980 8 H 0.106 0.894 9 C 0.304 3.696 10 O -0.391 6.391 11 N -0.336 5.336 12 C -0.067 4.067 13 C -0.040 4.040 14 C 0.009 3.991 15 H 0.106 0.894 16 O -0.337 6.337 17 C -0.005 4.005 18 N -0.313 5.313 19 C 0.020 3.980 20 C -0.370 4.370 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.553 5.553 24 Si 0.734 3.266 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.207 1.207 28 C -0.110 4.110 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.202 0.798 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.064 0.936 48 H 0.014 0.986 49 H 0.060 0.940 50 H 0.118 0.882 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.965 -1.991 -13.899 22.021 hybrid contribution -0.620 -0.948 1.082 1.567 sum 16.345 -2.940 -12.816 20.977 Atomic orbital electron populations 1.22461 0.97670 1.02822 1.02625 1.22175 0.93398 0.88970 1.03071 1.62508 1.58687 1.02536 1.02033 1.22869 1.00019 0.95911 0.93013 1.22736 0.98491 0.91310 0.88853 1.88131 1.78211 1.48442 1.12611 1.21901 0.99578 0.91210 0.85264 0.89372 1.19997 0.81417 0.84906 0.83284 1.90732 1.36557 1.28001 1.83835 1.47663 1.49908 1.30843 1.05230 1.21975 0.93866 0.88905 1.01966 1.22503 0.96674 0.96810 0.88039 1.23175 0.92725 0.84764 0.98387 0.89360 1.86679 1.73127 1.26950 1.46944 1.21458 0.89104 0.94891 0.95072 1.43866 1.00227 1.48631 1.38607 1.20801 0.88583 0.92633 0.96031 1.19067 1.07438 1.10247 1.00280 0.91665 1.24985 0.99606 0.97791 0.97156 1.70075 1.17404 1.39309 1.28514 0.86276 0.77783 0.79678 0.82847 1.21789 1.21940 1.20653 1.22869 0.99461 0.93152 0.95487 0.92513 0.91702 0.91792 0.90462 0.90172 0.93223 0.89462 0.87959 0.92184 0.91433 0.91424 0.90866 0.89435 0.90458 0.79844 0.93620 0.93647 0.95478 0.93605 0.98584 0.94009 0.88193 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.93 9.20 37.16 0.34 -1.59 16 2 C 0.05 0.44 6.10 -3.82 -0.02 0.42 16 3 N -0.53 -5.25 4.94 -234.31 -1.16 -6.41 16 4 C 0.01 0.09 5.33 -3.71 -0.02 0.07 16 5 C 0.06 0.61 7.01 37.21 0.26 0.87 16 6 O -0.36 -5.05 10.01 -55.06 -0.55 -5.60 16 7 C 0.08 1.05 2.40 -27.83 -0.07 0.99 16 8 H 0.09 0.94 7.13 -51.93 -0.37 0.57 16 9 C 0.52 8.21 7.10 -10.98 -0.08 8.13 16 10 O -0.52 -10.45 16.09 -14.28 -0.23 -10.68 16 11 N -0.60 -8.17 2.84 -181.57 -0.52 -8.69 16 12 C 0.08 0.74 8.57 59.85 0.51 1.25 16 13 C 0.08 1.20 5.11 -4.04 -0.02 1.18 16 14 C 0.07 1.37 3.48 -26.74 -0.09 1.28 16 15 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 16 O -0.53 -10.46 12.17 -35.23 -0.43 -10.89 16 17 C 0.12 2.50 5.43 -4.04 -0.02 2.48 16 18 N -0.59 -15.11 2.87 -181.12 -0.52 -15.63 16 19 C 0.16 4.27 9.01 59.85 0.54 4.81 16 20 C -0.24 -6.59 9.02 -15.06 -0.14 -6.72 16 21 H 0.07 1.72 7.84 -52.49 -0.41 1.31 16 22 C 0.00 0.07 5.13 -17.43 -0.09 -0.02 16 23 N -0.91 -27.29 10.58 55.49 0.59 -26.71 16 24 Si 0.90 22.19 29.57 -169.99 -5.03 17.16 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 28 C 0.02 0.22 4.11 -3.71 -0.02 0.20 16 29 H 0.06 0.56 6.61 -51.93 -0.34 0.21 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.77 6.42 -51.92 -0.33 0.43 16 32 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.52 6.59 -51.93 -0.34 0.17 16 35 H 0.09 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.71 7.08 -51.93 -0.37 0.35 16 39 H 0.07 0.53 6.06 -51.93 -0.31 0.21 16 40 H 0.07 0.58 7.89 -51.93 -0.41 0.17 16 41 H 0.09 1.35 7.42 -51.93 -0.39 0.96 16 42 H 0.08 0.89 7.89 -51.93 -0.41 0.48 16 43 H 0.36 5.76 9.04 45.56 0.41 6.17 16 44 H 0.05 0.85 8.03 -51.93 -0.42 0.43 16 45 H 0.05 0.87 7.87 -51.93 -0.41 0.46 16 46 H 0.03 0.77 7.42 -51.93 -0.39 0.39 16 47 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 48 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 49 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 50 H 0.10 1.08 5.22 -51.93 -0.27 0.81 16 51 H 0.06 0.83 6.40 -51.93 -0.33 0.50 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -35.55 392.59 -8.80 -44.34 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.96 Total: 3.83 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 1.09 Total: 13.35 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -1.60 Total: -57.43 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -1.21 Total: -27.17 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.55 -8.80 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486359432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.565 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds