Wall clock time and date at job start Tue Mar 31 2020 05:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.46683 * 2 1 4 4 C 1.47009 * 110.99830 * 313.63039 * 3 2 1 5 5 C 1.53104 * 109.25707 * 177.61051 * 4 3 2 6 6 O 1.43010 * 109.25575 * 56.84788 * 5 4 3 7 7 C 1.43022 * 113.77993 * 301.35295 * 6 5 4 8 8 H 1.08992 * 109.46717 * 298.69410 * 7 6 5 9 9 C 1.50702 * 109.54400 * 178.56068 * 7 6 5 10 10 O 1.21281 * 120.00208 * 355.19885 * 9 7 6 11 11 N 1.34777 * 119.99406 * 175.19985 * 9 7 6 12 12 C 1.46495 * 120.00271 * 359.97438 * 11 9 7 13 13 C 1.46502 * 119.99671 * 179.97438 * 11 9 7 14 14 C 1.53006 * 109.47301 * 89.99902 * 13 11 9 15 15 H 1.08999 * 109.46994 * 304.99899 * 14 13 11 16 16 O 1.42900 * 109.46810 * 64.99649 * 14 13 11 17 17 C 1.53001 * 109.46973 * 184.99967 * 14 13 11 18 18 N 1.46504 * 109.46583 * 179.97438 * 17 14 13 19 19 C 1.46499 * 119.99696 * 90.00391 * 18 17 14 20 20 C 1.36936 * 120.00248 * 269.99838 * 18 17 14 21 21 H 1.08004 * 120.00016 * 23.19006 * 20 18 17 22 22 C 1.38807 * 120.00002 * 203.19086 * 20 18 17 23 23 N 1.31615 * 120.00367 * 13.71296 * 22 20 18 24 24 Si 1.86800 * 119.99869 * 193.70890 * 22 20 18 25 25 H 1.48498 * 109.47276 * 60.00001 * 24 22 20 26 26 H 1.48501 * 109.47070 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47038 * 300.00020 * 24 22 20 28 28 C 1.47011 * 110.99667 * 189.99852 * 3 2 1 29 29 H 1.09004 * 109.46909 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47582 * 300.00141 * 1 2 3 31 31 H 1.08997 * 109.46815 * 60.00685 * 1 2 3 32 32 H 1.09000 * 109.47582 * 239.99859 * 2 1 3 33 33 H 1.09006 * 109.46938 * 119.99393 * 2 1 3 34 34 H 1.09001 * 109.51131 * 297.54627 * 4 3 2 35 35 H 1.09003 * 109.50822 * 57.67526 * 4 3 2 36 36 H 1.09001 * 109.50676 * 176.78047 * 5 4 3 37 37 H 1.09000 * 109.50181 * 296.87002 * 5 4 3 38 38 H 1.08998 * 109.46897 * 90.00269 * 12 11 9 39 39 H 1.08999 * 109.47321 * 210.00104 * 12 11 9 40 40 H 1.08995 * 109.47379 * 330.00080 * 12 11 9 41 41 H 1.09002 * 109.47322 * 209.99730 * 13 11 9 42 42 H 1.09006 * 109.47328 * 329.99753 * 13 11 9 43 43 H 0.96705 * 113.99825 * 60.00720 * 16 14 13 44 44 H 1.08999 * 109.47205 * 299.99803 * 17 14 13 45 45 H 1.09002 * 109.47220 * 60.00137 * 17 14 13 46 46 H 1.08998 * 109.47177 * 95.15446 * 19 18 17 47 47 H 1.09003 * 109.47049 * 215.15804 * 19 18 17 48 48 H 1.08996 * 109.47410 * 335.15267 * 19 18 17 49 49 H 0.96998 * 120.00649 * 179.97438 * 23 22 20 50 50 H 1.09005 * 109.51193 * 302.32516 * 28 3 2 51 51 H 1.09003 * 109.51216 * 62.40971 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.3022 2.1974 -0.9934 5 6 1.8007 3.6430 -0.9185 6 8 3.2162 3.6650 -1.1213 7 6 3.9470 2.8844 -0.1716 8 1 3.7763 3.2780 0.8303 9 6 5.4180 2.9460 -0.4937 10 8 5.7966 3.5215 -1.4918 11 7 6.3126 2.3615 0.3276 12 6 5.8552 1.6667 1.5335 13 6 7.7425 2.4209 0.0143 14 6 8.3536 3.6687 0.6551 15 1 7.8009 4.5508 0.3320 16 8 8.2827 3.5567 2.0779 17 6 9.8165 3.7979 0.2259 18 7 10.4015 4.9930 0.8390 19 6 11.0495 4.9013 2.1497 20 6 10.3426 6.1957 0.1869 21 1 9.5801 6.3693 -0.5580 22 6 11.2629 7.1916 0.4834 23 7 12.3432 6.9039 1.1780 24 14 10.9682 8.9403 -0.1037 25 1 9.6949 9.4467 0.4685 26 1 12.0898 9.8069 0.3395 27 1 10.8861 8.9575 -1.5864 28 6 3.4695 1.4313 -0.2383 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.4877 1.7997 -1.9912 35 1 0.2331 2.1696 -0.7828 36 1 1.3130 4.2367 -1.6916 37 1 1.5663 4.0584 0.0616 38 1 5.6611 0.6203 1.2984 39 1 6.6247 1.7295 2.3029 40 1 4.9396 2.1335 1.8965 41 1 8.2374 1.5320 0.4055 42 1 7.8761 2.4650 -1.0667 43 1 8.7539 2.7920 2.4363 44 1 10.3692 2.9157 0.5490 45 1 9.8706 3.8832 -0.8595 46 1 12.1226 4.7654 2.0157 47 1 10.8664 5.8179 2.7104 48 1 10.6415 4.0523 2.6981 49 1 12.9865 7.5998 1.3849 50 1 3.9825 0.8443 0.5235 51 1 3.6898 1.0206 -1.2237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486359433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:58 Heat of formation + Delta-G solvation = -80.307643 kcal Electronic energy + Delta-G solvation = -29923.695984 eV Core-core repulsion = 25860.051554 eV Total energy + Delta-G solvation = -4063.644430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.71705 -39.16617 -37.41163 -36.48347 -35.34571 -34.50888 -32.27379 -31.29491 -31.10335 -29.72124 -27.56460 -26.97506 -25.77812 -25.29641 -24.49311 -22.97569 -21.88223 -20.71773 -20.54908 -19.44557 -17.45225 -17.03590 -16.68684 -16.53095 -16.15615 -15.83967 -15.63495 -15.30321 -15.01414 -14.74826 -14.65938 -14.52306 -14.15719 -13.79313 -13.50949 -13.28662 -13.20200 -12.96576 -12.81941 -12.71813 -12.37473 -12.23026 -11.99379 -11.84500 -11.68318 -11.45210 -11.34375 -11.07221 -11.03078 -10.78634 -10.63823 -10.48532 -10.31383 -10.04120 -9.95615 -9.82477 -9.76665 -9.55772 -8.85199 -8.60865 -8.32971 -6.60033 -5.62953 -3.09201 2.54316 2.67177 3.32058 3.47426 3.51060 3.54696 3.71323 4.29857 4.47250 4.52495 4.57727 4.58231 4.67721 4.75794 4.86448 4.90778 4.95457 5.01392 5.06132 5.11409 5.16253 5.26704 5.31653 5.33630 5.37399 5.46646 5.48347 5.51974 5.58067 5.66545 5.68447 5.84872 5.94322 5.97504 6.06602 6.44600 6.47125 6.48770 6.66669 6.80736 6.82066 6.88659 7.33335 7.49467 7.80263 7.90796 8.17544 8.21024 8.49455 9.33372 9.96249 10.44706 11.41162 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.020789 B = 0.002610 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.574784 B =10726.024595 C =11633.842857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.050 3.950 3 N -0.535 5.535 4 C 0.009 3.991 5 C 0.062 3.938 6 O -0.355 6.355 7 C 0.081 3.919 8 H 0.093 0.907 9 C 0.518 3.482 10 O -0.512 6.512 11 N -0.604 5.604 12 C 0.076 3.924 13 C 0.085 3.915 14 C 0.070 3.930 15 H 0.098 0.902 16 O -0.549 6.549 17 C 0.126 3.874 18 N -0.592 5.592 19 C 0.170 3.830 20 C -0.253 4.253 21 H 0.066 0.934 22 C 0.002 3.998 23 N -0.909 5.909 24 Si 0.904 3.096 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.024 3.976 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.357 0.643 44 H 0.038 0.962 45 H 0.056 0.944 46 H 0.026 0.974 47 H 0.037 0.963 48 H 0.000 1.000 49 H 0.252 0.748 50 H 0.098 0.902 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.721 -18.204 0.875 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.119 4.119 5 C -0.016 4.016 6 O -0.273 6.273 7 C 0.019 3.981 8 H 0.110 0.890 9 C 0.303 3.697 10 O -0.386 6.386 11 N -0.338 5.338 12 C -0.067 4.067 13 C -0.038 4.038 14 C 0.007 3.993 15 H 0.116 0.884 16 O -0.352 6.352 17 C -0.003 4.003 18 N -0.313 5.313 19 C 0.025 3.975 20 C -0.382 4.382 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.554 5.554 24 Si 0.734 3.266 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.209 1.209 28 C -0.104 4.104 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.202 0.798 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.019 0.981 49 H 0.062 0.938 50 H 0.116 0.884 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.703 -16.912 0.631 28.317 hybrid contribution 0.164 -0.051 -0.740 0.759 sum -22.539 -16.963 -0.109 28.210 Atomic orbital electron populations 1.21933 0.94690 1.02167 1.02611 1.22128 0.96001 0.88447 1.01180 1.62327 1.03234 1.11523 1.48979 1.22957 0.99899 0.94770 0.94230 1.22768 0.81104 0.95161 1.02534 1.88147 1.17530 1.69064 1.52512 1.21904 0.90184 0.91596 0.94399 0.88970 1.19998 0.86940 0.79247 0.83475 1.90756 1.80164 1.41175 1.26482 1.47658 1.06822 1.55082 1.24281 1.21961 1.01565 0.95782 0.87379 1.22374 0.79018 0.99706 1.02667 1.23297 0.99287 0.96327 0.80434 0.88446 1.86655 1.76699 1.50918 1.20934 1.21283 0.90863 0.90523 0.97602 1.43693 1.65935 1.04065 1.17647 1.20729 0.95322 0.96643 0.84780 1.19142 1.09487 0.90255 1.19361 0.91650 1.24984 0.95263 0.98989 1.00405 1.70062 1.10014 1.31823 1.43484 0.86344 0.77087 0.84710 0.78495 1.21091 1.21676 1.20901 1.22826 0.89138 0.96439 1.02017 0.91938 0.91567 0.92320 0.94647 0.90221 0.93731 0.88758 0.87834 0.91966 0.92894 0.89909 0.91048 0.90410 0.89088 0.79820 0.94379 0.92564 0.95573 0.94421 0.98148 0.93824 0.88383 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 9.18 37.16 0.34 -0.44 16 2 C 0.05 0.32 6.00 -3.82 -0.02 0.29 16 3 N -0.53 -4.41 4.88 -234.30 -1.14 -5.56 16 4 C 0.01 0.07 4.94 -3.71 -0.02 0.06 16 5 C 0.06 0.58 7.01 37.21 0.26 0.84 16 6 O -0.35 -4.99 10.01 -55.04 -0.55 -5.54 16 7 C 0.08 1.00 2.40 -27.83 -0.07 0.93 16 8 H 0.09 1.05 7.14 -51.93 -0.37 0.68 16 9 C 0.52 7.97 7.10 -10.98 -0.08 7.90 16 10 O -0.51 -10.31 16.09 -14.25 -0.23 -10.54 16 11 N -0.60 -7.75 2.84 -181.57 -0.52 -8.27 16 12 C 0.08 0.66 8.74 59.84 0.52 1.19 16 13 C 0.09 1.18 5.06 -4.04 -0.02 1.16 16 14 C 0.07 1.24 3.48 -26.73 -0.09 1.15 16 15 H 0.10 2.17 8.14 -51.93 -0.42 1.74 16 16 O -0.55 -9.32 10.97 -35.23 -0.39 -9.71 16 17 C 0.13 2.58 5.34 -4.04 -0.02 2.56 16 18 N -0.59 -15.35 2.84 -181.12 -0.51 -15.86 16 19 C 0.17 4.29 8.66 59.85 0.52 4.81 16 20 C -0.25 -7.33 9.65 -15.06 -0.15 -7.47 16 21 H 0.07 1.90 7.87 -52.48 -0.41 1.48 16 22 C 0.00 0.05 5.09 -17.43 -0.09 -0.04 16 23 N -0.91 -27.47 10.76 55.49 0.60 -26.87 16 24 Si 0.90 23.08 29.58 -169.99 -5.03 18.06 16 25 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 28 C 0.02 0.23 4.61 -3.71 -0.02 0.21 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.29 6.28 -51.93 -0.33 -0.04 16 32 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.57 6.05 -51.93 -0.31 0.25 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.34 7.08 -51.93 -0.37 -0.03 16 39 H 0.08 0.70 7.11 -51.93 -0.37 0.33 16 40 H 0.07 0.57 6.05 -51.93 -0.31 0.26 16 41 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 42 H 0.09 1.39 7.42 -51.93 -0.39 1.00 16 43 H 0.36 4.64 8.79 45.56 0.40 5.04 16 44 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 45 H 0.06 1.18 8.04 -51.93 -0.42 0.77 16 46 H 0.03 0.71 7.33 -51.93 -0.38 0.33 16 47 H 0.04 1.04 7.37 -51.93 -0.38 0.66 16 48 H 0.00 0.00 7.00 -51.93 -0.36 -0.36 16 49 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.10 0.75 5.19 -51.93 -0.27 0.48 16 51 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -36.52 392.94 -8.83 -45.35 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -8.05 Total: -0.11 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 1.07 Total: 13.14 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -1.58 Total: -56.56 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -1.17 Total: -25.80 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.03 Total: 18.06 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.52 -8.83 -45.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486359433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.958 kcal (2) G-P(sol) polarization free energy of solvation -36.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds