Wall clock time and date at job start Tue Mar 31 2020 04:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00150 * 2 1 4 4 C 1.52999 * 109.47056 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47388 * 55.00114 * 4 3 2 6 6 O 1.42904 * 109.47316 * 295.00014 * 4 3 2 7 7 C 1.42903 * 113.99833 * 149.99848 * 6 4 3 8 8 C 1.50703 * 109.47142 * 175.00286 * 4 3 2 9 9 O 1.21275 * 120.00315 * 114.99971 * 8 4 3 10 10 N 1.34778 * 119.99548 * 295.00325 * 8 4 3 11 11 C 1.46506 * 119.99658 * 179.97438 * 10 8 4 12 12 H 1.08993 * 110.64481 * 323.30201 * 11 10 8 13 13 C 1.54600 * 110.72252 * 86.45429 * 11 10 8 14 14 C 1.53994 * 105.14079 * 140.31268 * 13 11 10 15 15 N 1.47901 * 107.05483 * 1.22496 * 14 13 11 16 16 C 1.46906 * 110.99930 * 214.15316 * 15 14 13 17 17 C 1.50692 * 109.47142 * 176.64096 * 16 15 14 18 18 O 1.21293 * 120.00556 * 6.13526 * 17 16 15 19 19 N 1.34776 * 119.99831 * 186.13508 * 17 16 15 20 20 C 1.37101 * 120.00231 * 179.72332 * 19 17 16 21 21 H 1.08005 * 119.99897 * 0.27309 * 20 19 17 22 22 C 1.38949 * 120.00349 * 180.27930 * 20 19 17 23 23 N 1.31411 * 120.00101 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99852 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47128 * 90.00035 * 24 22 20 26 26 H 1.48503 * 109.46915 * 209.99855 * 24 22 20 27 27 H 1.48501 * 109.47466 * 329.99476 * 24 22 20 28 28 C 1.48530 * 105.82267 * 334.66664 * 15 14 13 29 29 H 1.09005 * 109.47509 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47358 * 299.99639 * 1 2 3 31 31 H 1.09000 * 109.47434 * 59.99878 * 1 2 3 32 32 H 1.09003 * 109.46482 * 60.00191 * 3 2 1 33 33 H 1.08988 * 109.47141 * 300.00299 * 3 2 1 34 34 H 1.08998 * 109.46862 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47418 * 300.00571 * 7 6 4 36 36 H 1.09001 * 109.46568 * 60.00238 * 7 6 4 37 37 H 0.96999 * 120.00112 * 359.97438 * 10 8 4 38 38 H 1.09004 * 110.31015 * 21.39776 * 13 11 10 39 39 H 1.08997 * 110.39088 * 259.27704 * 13 11 10 40 40 H 1.08999 * 109.91719 * 241.87327 * 14 13 11 41 41 H 1.09000 * 110.08036 * 120.66660 * 14 13 11 42 42 H 1.09000 * 109.46979 * 56.63543 * 16 15 14 43 43 H 1.09002 * 109.46915 * 296.64168 * 16 15 14 44 44 H 0.97005 * 120.00053 * 0.02562 * 19 17 16 45 45 H 0.96999 * 120.00176 * 180.02562 * 23 22 20 46 46 H 1.09006 * 110.66713 * 157.64078 * 28 15 14 47 47 H 1.08998 * 110.67080 * 280.77302 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8514 0.5681 -0.8409 6 8 3.9648 0.5795 1.2220 7 6 5.1682 -0.1818 1.1018 8 6 4.1480 2.5559 -0.1231 9 8 4.8062 3.0105 0.7884 10 7 3.9644 3.2770 -1.2468 11 6 4.5595 4.6104 -1.3670 12 1 4.5329 5.1307 -0.4096 13 6 6.0081 4.5170 -1.8988 14 6 6.1535 5.6958 -2.8790 15 7 4.8677 6.4267 -2.8721 16 6 4.5686 6.9783 -4.2004 17 6 3.2165 7.6431 -4.1754 18 8 2.6148 7.7548 -3.1282 19 7 2.6758 8.1138 -5.3167 20 6 1.4432 8.7136 -5.2950 21 1 0.9074 8.8129 -4.3625 22 6 0.8832 9.1936 -6.4725 23 7 1.5353 9.0731 -7.6071 24 14 -0.7960 10.0115 -6.4426 25 1 -0.6321 11.4702 -6.2180 26 1 -1.4803 9.7844 -7.7409 27 1 -1.6104 9.4300 -5.3455 28 6 3.8402 5.4349 -2.4639 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6885 1.8463 0.8901 33 1 1.6886 1.8463 -0.8899 34 1 5.4271 -0.6075 2.0712 35 1 5.0195 -0.9848 0.3799 36 1 5.9760 0.4667 0.7626 37 1 3.4382 2.9132 -1.9760 38 1 6.1598 3.5713 -2.4193 39 1 6.7205 4.6158 -1.0798 40 1 6.3626 5.3217 -3.8812 41 1 6.9576 6.3558 -2.5538 42 1 4.5643 6.1734 -4.9355 43 1 5.3292 7.7115 -4.4690 44 1 3.1569 8.0242 -6.1543 45 1 1.1445 9.4086 -8.4291 46 1 2.9628 5.9361 -2.0551 47 1 3.5642 4.7986 -3.3047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490560495.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:38 Heat of formation + Delta-G solvation = -145.063523 kcal Electronic energy + Delta-G solvation = -28560.356292 eV Core-core repulsion = 24358.070742 eV Total energy + Delta-G solvation = -4202.285550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -40.51725 -39.23267 -38.23336 -37.60045 -37.07502 -34.57227 -33.91260 -31.86969 -31.26932 -30.50172 -28.42087 -27.10702 -26.72961 -26.15359 -24.33732 -23.90053 -21.34909 -21.22146 -20.29896 -19.23167 -18.01359 -17.89729 -17.45046 -16.88017 -16.28413 -16.15180 -15.96564 -15.60675 -15.36750 -15.04521 -14.61912 -14.58603 -14.40405 -14.21094 -14.00928 -13.61745 -13.48259 -13.21212 -12.81331 -12.73312 -12.42978 -12.12782 -11.95795 -11.76941 -11.70639 -11.56086 -11.44485 -11.31390 -11.22543 -10.93256 -10.82310 -10.67899 -10.43293 -10.26627 -10.07682 -9.57232 -9.53517 -9.23399 -8.49479 -8.10000 -7.98883 -6.46700 -3.87663 2.24350 2.71003 3.14169 3.23333 3.28514 3.37333 3.49139 3.84320 4.02143 4.23594 4.43161 4.50061 4.59768 4.68260 4.75250 4.91542 4.97703 5.00611 5.07568 5.09807 5.10276 5.18321 5.20224 5.26157 5.32513 5.37283 5.37684 5.45325 5.61131 5.74486 5.82632 5.86036 5.98760 6.05586 6.20895 6.30737 6.40384 6.64864 6.73078 7.06830 7.13937 7.27792 7.50479 7.97550 8.00844 8.56062 9.12926 9.48625 10.00036 10.70951 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013214 B = 0.002547 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.425500 B =10990.858528 C =12665.271164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.069 3.931 4 C 0.077 3.923 5 H 0.095 0.905 6 O -0.350 6.350 7 C 0.031 3.969 8 C 0.494 3.506 9 O -0.515 6.515 10 N -0.718 5.718 11 C 0.139 3.861 12 H 0.104 0.896 13 C -0.139 4.139 14 C 0.034 3.966 15 N -0.490 5.490 16 C 0.038 3.962 17 C 0.441 3.559 18 O -0.579 6.579 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.037 3.963 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.400 0.600 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.114 0.886 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.592 -18.555 8.519 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.009 4.009 4 C 0.015 3.985 5 H 0.113 0.887 6 O -0.267 6.267 7 C -0.066 4.066 8 C 0.278 3.722 9 O -0.390 6.390 10 N -0.372 5.372 11 C 0.034 3.966 12 H 0.122 0.878 13 C -0.178 4.178 14 C -0.094 4.094 15 N -0.214 5.214 16 C -0.094 4.094 17 C 0.226 3.774 18 O -0.463 6.463 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.091 4.091 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.235 0.765 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.132 0.868 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.640 -17.788 10.245 21.288 hybrid contribution -0.703 -0.221 -2.003 2.134 sum 4.937 -18.009 8.242 20.411 Atomic orbital electron populations 1.22796 0.80319 1.03031 1.00452 1.87879 1.20173 1.26670 1.95516 1.22492 0.90208 0.85991 1.02182 1.21995 0.94161 0.91970 0.90382 0.88722 1.88028 1.42164 1.66974 1.29507 1.22865 0.86495 0.94311 1.02921 1.21076 0.81406 0.87260 0.82414 1.90734 1.39110 1.70507 1.38621 1.46115 1.54520 1.18103 1.18487 1.21997 0.91947 0.81753 1.00913 0.87791 1.22789 0.97498 0.98188 0.99343 1.22917 0.93808 0.94578 0.98108 1.64488 1.01139 1.30195 1.25598 1.22103 0.98311 0.99391 0.89590 1.19697 0.87544 0.85162 0.84956 1.90493 1.63564 1.61594 1.30632 1.41871 1.18287 1.51677 1.08086 1.19696 0.93877 1.33559 0.95738 0.87884 1.25267 1.00008 0.97921 0.94722 1.69609 1.38992 1.46843 0.98819 0.85859 0.81428 0.79424 0.77596 1.20345 1.20934 1.19417 1.23535 0.97122 0.92642 0.95837 0.89355 0.93718 0.93672 0.91417 0.91054 0.89143 0.93766 0.93734 0.76517 0.91382 0.90509 0.93710 0.90067 0.93364 0.88896 0.77480 0.91832 0.86778 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.82 10.67 -40.08 -0.43 -4.25 16 3 C 0.07 0.64 5.57 37.16 0.21 0.85 16 4 C 0.08 0.78 2.80 -27.88 -0.08 0.70 16 5 H 0.10 0.75 7.79 -51.93 -0.40 0.35 16 6 O -0.35 -4.23 9.85 -59.70 -0.59 -4.82 16 7 C 0.03 0.27 10.81 101.05 1.09 1.36 16 8 C 0.49 6.00 7.13 -10.98 -0.08 5.92 16 9 O -0.52 -8.33 16.23 -14.30 -0.23 -8.56 16 10 N -0.72 -7.64 5.04 -52.00 -0.26 -7.91 16 11 C 0.14 1.80 3.35 -66.06 -0.22 1.58 16 12 H 0.10 1.58 7.69 -51.93 -0.40 1.18 16 13 C -0.14 -1.61 6.67 -25.37 -0.17 -1.78 16 14 C 0.03 0.43 6.70 -2.75 -0.02 0.41 16 15 N -0.49 -7.89 5.11 -231.89 -1.18 -9.08 16 16 C 0.04 0.65 5.30 -4.98 -0.03 0.62 16 17 C 0.44 10.02 7.41 -10.99 -0.08 9.94 16 18 O -0.58 -14.99 13.87 5.55 0.08 -14.92 16 19 N -0.56 -13.82 5.29 -10.96 -0.06 -13.88 16 20 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 21 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 24 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 28 C 0.04 0.56 5.19 -1.90 -0.01 0.55 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.53 7.77 -51.94 -0.40 0.13 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.40 3.25 8.23 -40.82 -0.34 2.92 16 38 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.04 0.50 7.68 -51.93 -0.40 0.10 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.74 7.98 -51.93 -0.41 0.33 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 44 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 45 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 46 H 0.11 2.12 6.43 -51.93 -0.33 1.78 16 47 H 0.04 0.60 7.88 -51.93 -0.41 0.19 16 LS Contribution 391.34 15.07 5.90 5.90 Total: -1.00 -33.85 391.34 -7.16 -41.01 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -7.58 Total: 10.48 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 1.49 Total: 13.71 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.78 Total: -54.16 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.17 Total: -32.54 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.85 -7.16 -41.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490560495.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.053 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds