Wall clock time and date at job start Tue Mar 31 2020 04:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99766 * 2 1 4 4 C 1.52999 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47205 * 305.00362 * 4 3 2 6 6 O 1.42902 * 109.46834 * 65.00440 * 4 3 2 7 7 C 1.42906 * 114.00182 * 269.99632 * 6 4 3 8 8 C 1.50701 * 109.47272 * 184.99840 * 4 3 2 9 9 O 1.21280 * 120.00319 * 245.00432 * 8 4 3 10 10 N 1.34779 * 119.99480 * 65.00363 * 8 4 3 11 11 C 1.46497 * 119.99703 * 179.97438 * 10 8 4 12 12 H 1.09004 * 110.35379 * 327.13945 * 11 10 8 13 13 C 1.54592 * 110.31088 * 89.28423 * 11 10 8 14 14 C 1.54935 * 102.92439 * 140.86784 * 13 11 10 15 15 N 1.48532 * 103.23120 * 322.59281 * 14 13 11 16 16 C 1.46899 * 111.00521 * 159.71906 * 15 14 13 17 17 C 1.50698 * 109.46987 * 52.59789 * 16 15 14 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31413 * 119.99930 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99918 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47112 * 89.99702 * 24 22 20 26 26 H 1.48498 * 109.47011 * 209.99970 * 24 22 20 27 27 H 1.48494 * 109.47201 * 329.99943 * 24 22 20 28 28 C 1.47902 * 105.82040 * 39.19825 * 15 14 13 29 29 H 1.09000 * 109.47166 * 299.99744 * 1 2 3 30 30 H 1.09002 * 109.47714 * 60.00036 * 1 2 3 31 31 H 1.09004 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47205 * 60.00408 * 3 2 1 33 33 H 1.09003 * 109.47449 * 300.00473 * 3 2 1 34 34 H 1.08997 * 109.47172 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.46855 * 300.00571 * 7 6 4 36 36 H 1.09007 * 109.46596 * 60.00041 * 7 6 4 37 37 H 0.97000 * 120.00140 * 359.97438 * 10 8 4 38 38 H 1.08998 * 110.72934 * 259.23442 * 13 11 10 39 39 H 1.09011 * 110.72257 * 22.33729 * 13 11 10 40 40 H 1.08996 * 110.67300 * 204.15252 * 14 13 11 41 41 H 1.09006 * 110.66239 * 81.02129 * 14 13 11 42 42 H 1.09003 * 109.46477 * 292.60279 * 16 15 14 43 43 H 1.08993 * 109.47002 * 172.60605 * 16 15 14 44 44 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 45 45 H 0.96999 * 119.99993 * 179.97438 * 23 22 20 46 46 H 1.09004 * 109.91425 * 94.02645 * 28 15 14 47 47 H 1.08994 * 109.92051 * 215.32000 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8507 0.5686 0.8426 6 8 3.9657 0.5794 -1.2202 7 6 4.0472 -0.8463 -1.1650 8 6 4.1478 2.5561 0.1244 9 8 4.8067 3.0105 -0.7867 10 7 3.9633 3.2776 1.2478 11 6 4.5591 4.6104 1.3684 12 1 5.5080 4.6514 0.8334 13 6 3.5889 5.6833 0.8231 14 6 3.7673 6.8526 1.8238 15 7 3.9325 6.1616 3.1282 16 6 4.5800 7.0403 4.1113 17 6 3.8330 8.3470 4.1858 18 8 2.8570 8.5283 3.4888 19 7 4.2489 9.3139 5.0277 20 6 3.5727 10.5048 5.0914 21 1 2.7041 10.6665 4.4702 22 6 4.0049 11.5038 5.9551 23 7 3.3570 12.6455 6.0158 24 14 5.5076 11.2244 7.0289 25 1 6.7243 11.6696 6.3032 26 1 5.3689 12.0019 8.2865 27 1 5.6243 9.7794 7.3507 28 6 4.7657 4.9714 2.8512 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 4.3802 -1.2288 -2.1298 35 1 4.7578 -1.1399 -0.3923 36 1 3.0652 -1.2575 -0.9307 37 1 3.4360 2.9142 1.9764 38 1 3.8773 5.9889 -0.1826 39 1 2.5625 5.3163 0.8337 40 1 2.8819 7.4883 1.8347 41 1 4.6568 7.4342 1.5812 42 1 5.6102 7.2275 3.8083 43 1 4.5705 6.5600 5.0897 44 1 5.0292 9.1688 5.5853 45 1 3.6585 13.3428 6.6190 46 1 5.8151 5.2020 3.0346 47 1 4.4493 4.1414 3.4830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490560496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:46 Heat of formation + Delta-G solvation = -134.306558 kcal Electronic energy + Delta-G solvation = -28373.131330 eV Core-core repulsion = 24171.312237 eV Total energy + Delta-G solvation = -4201.819093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -40.56722 -39.37288 -38.49331 -37.65017 -37.14128 -34.63761 -33.91486 -31.94787 -31.65559 -30.53887 -28.46522 -27.45957 -26.77545 -26.15755 -24.24866 -23.79212 -21.38193 -21.04667 -20.62612 -19.46613 -18.37512 -17.96622 -17.54410 -16.92187 -16.35210 -16.23071 -15.95198 -15.68863 -15.47345 -15.09220 -14.78996 -14.73838 -14.45005 -14.37447 -14.02888 -13.41775 -13.36593 -13.17523 -12.99187 -12.62536 -12.61084 -12.32530 -12.11242 -12.00358 -11.91732 -11.72029 -11.61618 -11.55117 -11.20661 -11.09831 -10.73057 -10.59938 -10.31285 -10.18547 -10.01538 -9.80246 -9.60072 -9.32777 -8.53802 -8.24893 -8.10150 -6.35191 -3.86865 2.19207 2.50769 2.99450 3.03720 3.12381 3.25612 3.65460 3.67612 3.98209 4.06873 4.33222 4.38669 4.48381 4.56638 4.70755 4.79794 4.84784 4.91358 4.96612 5.03204 5.05950 5.18148 5.18838 5.24266 5.25938 5.35206 5.36777 5.49760 5.57289 5.59491 5.67549 5.76823 5.86991 5.97709 6.14791 6.30627 6.55617 6.57213 6.66205 7.04903 7.07302 7.21521 7.53444 7.91557 8.10112 8.54874 8.90598 9.37525 9.77213 10.77683 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.002032 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.320020 B =13777.060543 C =14180.396084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.044 3.956 4 C 0.077 3.923 5 H 0.095 0.905 6 O -0.355 6.355 7 C 0.028 3.972 8 C 0.518 3.482 9 O -0.511 6.511 10 N -0.716 5.716 11 C 0.136 3.864 12 H 0.096 0.904 13 C -0.135 4.135 14 C 0.037 3.963 15 N -0.494 5.494 16 C 0.033 3.967 17 C 0.450 3.550 18 O -0.563 6.563 19 N -0.588 5.588 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.879 5.879 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.027 3.973 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.060 0.940 37 H 0.402 0.598 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.040 0.960 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.371 0.629 45 H 0.274 0.726 46 H 0.055 0.945 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 -26.738 -7.866 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.034 4.034 4 C 0.015 3.985 5 H 0.112 0.888 6 O -0.273 6.273 7 C -0.068 4.068 8 C 0.302 3.698 9 O -0.385 6.385 10 N -0.370 5.370 11 C 0.031 3.969 12 H 0.114 0.886 13 C -0.174 4.174 14 C -0.090 4.090 15 N -0.219 5.219 16 C -0.099 4.099 17 C 0.236 3.764 18 O -0.445 6.445 19 N -0.227 5.227 20 C -0.434 4.434 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.519 5.519 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.102 4.102 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.238 0.762 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.110 0.890 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.830 -26.259 -8.858 27.725 hybrid contribution 1.501 0.046 1.386 2.043 sum 2.331 -26.214 -7.472 27.357 Atomic orbital electron populations 1.22796 0.80299 1.02999 1.00495 1.87826 1.20373 1.27004 1.95540 1.23041 0.92325 0.85871 1.02129 1.21906 0.92600 0.93546 0.90428 0.88764 1.88023 1.87738 1.20277 1.31242 1.22961 1.01228 0.80197 1.02402 1.20079 0.81132 0.85915 0.82699 1.90748 1.38694 1.70615 1.38442 1.46089 1.54612 1.17884 1.18463 1.21906 0.97622 0.81195 0.96182 0.88564 1.23002 0.99875 0.95311 0.99244 1.23515 1.03805 0.95512 0.86183 1.64645 1.42694 1.05632 1.08884 1.22150 0.96083 0.93818 0.97860 1.19581 0.87528 0.85018 0.84264 1.90483 1.28388 1.80769 1.44863 1.42198 1.28157 1.14895 1.37411 1.19427 1.12117 0.88586 1.23274 0.86216 1.25051 0.98080 0.95336 0.97692 1.69620 1.39659 1.04892 1.37748 0.86671 0.83224 0.78436 0.81064 1.19633 1.20127 1.19469 1.23196 0.96790 0.95614 0.94583 0.93636 0.93736 0.89375 0.91571 0.91493 0.89484 0.94157 0.92171 0.76230 0.90691 0.90419 0.85984 0.94148 0.93038 0.89006 0.79664 0.91563 0.92670 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.11 8.83 -40.08 -0.35 -3.46 16 3 C 0.04 0.35 5.57 37.16 0.21 0.55 16 4 C 0.08 0.71 2.91 -27.88 -0.08 0.62 16 5 H 0.09 0.65 7.79 -51.93 -0.40 0.25 16 6 O -0.36 -4.03 9.88 -59.70 -0.59 -4.62 16 7 C 0.03 0.22 10.71 101.05 1.08 1.30 16 8 C 0.52 5.82 7.18 -10.98 -0.08 5.75 16 9 O -0.51 -8.04 16.16 -14.30 -0.23 -8.27 16 10 N -0.72 -6.58 4.96 -52.49 -0.26 -6.84 16 11 C 0.14 1.51 3.34 -66.57 -0.22 1.28 16 12 H 0.10 1.16 7.56 -51.93 -0.39 0.77 16 13 C -0.14 -1.73 6.78 -24.87 -0.17 -1.90 16 14 C 0.04 0.58 5.30 -1.90 -0.01 0.57 16 15 N -0.49 -7.36 5.26 -231.89 -1.22 -8.58 16 16 C 0.03 0.52 5.52 -4.98 -0.03 0.49 16 17 C 0.45 9.83 7.49 -10.99 -0.08 9.75 16 18 O -0.56 -14.27 13.10 5.55 0.07 -14.19 16 19 N -0.59 -13.62 5.09 -10.96 -0.06 -13.67 16 20 C -0.31 -8.45 10.16 -14.93 -0.15 -8.61 16 21 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.35 13.96 55.50 0.77 -24.57 16 24 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.28 6.52 56.52 0.37 -4.92 16 28 C 0.03 0.30 6.47 -2.75 -0.02 0.28 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.41 7.77 -51.93 -0.40 0.01 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.04 0.26 8.09 -51.93 -0.42 -0.16 16 36 H 0.06 0.45 6.40 -51.93 -0.33 0.12 16 37 H 0.40 2.66 8.05 -40.82 -0.33 2.33 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 0.98 8.06 -51.92 -0.42 0.56 16 40 H 0.12 2.35 5.97 -51.93 -0.31 2.04 16 41 H 0.04 0.65 8.02 -51.93 -0.42 0.23 16 42 H 0.05 0.73 7.81 -51.93 -0.41 0.32 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.06 0.56 7.57 -51.93 -0.39 0.17 16 47 H 0.08 0.76 7.65 -51.93 -0.40 0.37 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -34.94 382.80 -6.72 -41.65 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -7.37 Total: 10.06 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 1.47 Total: 12.41 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.76 Total: -53.67 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.10 Total: -30.54 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.94 -6.72 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490560496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.652 kcal (2) G-P(sol) polarization free energy of solvation -34.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds