Wall clock time and date at job start Tue Mar 31 2020 04:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47380 * 2 1 4 4 C 1.53000 * 109.47280 * 239.99367 * 2 1 3 5 5 N 1.46504 * 109.47137 * 184.99956 * 4 2 1 6 6 C 1.34777 * 119.99538 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00616 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99434 * 180.02562 * 6 5 4 9 9 O 1.42895 * 109.46810 * 179.97438 * 8 6 5 10 10 C 1.42902 * 113.99975 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.43712 * 328.91334 * 10 9 8 12 12 C 1.54809 * 110.49013 * 206.22037 * 10 9 8 13 13 C 1.54991 * 102.09393 * 220.44351 * 12 10 9 14 14 O 1.44375 * 103.49298 * 37.02846 * 13 12 10 15 15 C 1.43751 * 106.97087 * 319.93979 * 14 13 12 16 16 N 1.46901 * 109.47135 * 119.99687 * 2 1 3 17 17 C 1.46902 * 110.99844 * 274.99848 * 16 2 1 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 2 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00057 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47191 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46534 * 120.00189 * 25 23 21 28 28 H 1.48498 * 109.47283 * 240.00132 * 25 23 21 29 29 H 1.08998 * 109.47251 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47292 * 300.00576 * 1 2 3 31 31 H 1.09001 * 109.46914 * 60.00062 * 1 2 3 32 32 H 1.08992 * 109.47023 * 305.00137 * 4 2 1 33 33 H 1.09002 * 109.46612 * 65.00112 * 4 2 1 34 34 H 0.96996 * 120.00009 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47016 * 299.99848 * 8 6 5 36 36 H 1.08997 * 109.47261 * 59.99934 * 8 6 5 37 37 H 1.08997 * 110.90741 * 338.64784 * 12 10 9 38 38 H 1.09007 * 110.90891 * 102.24617 * 12 10 9 39 39 H 1.08997 * 110.62051 * 278.52220 * 13 12 10 40 40 H 1.09005 * 110.61627 * 155.52492 * 13 12 10 41 41 H 1.09001 * 109.87544 * 267.08845 * 15 14 13 42 42 H 1.08996 * 110.00500 * 146.01073 * 15 14 13 43 43 H 1.00895 * 111.00207 * 38.95191 * 16 2 1 44 44 H 1.09004 * 109.47131 * 60.00016 * 17 16 2 45 45 H 1.09000 * 109.47732 * 300.00127 * 17 16 2 46 46 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 47 47 H 0.96996 * 120.00330 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.1731 -1.4285 -2.1910 7 8 3.5701 -1.8828 -3.1402 8 6 5.6750 -1.5371 -2.1303 9 8 6.1513 -2.2107 -3.2970 10 6 7.5712 -2.3665 -3.3393 11 1 8.0604 -1.5364 -2.8298 12 6 8.0614 -2.4717 -4.8040 13 6 9.1450 -3.5754 -4.7052 14 8 8.5992 -4.4978 -3.7379 15 6 7.9856 -3.7083 -2.7051 16 7 2.0196 -0.6924 1.1995 17 6 2.0824 0.2228 2.3469 18 6 2.5873 -0.5216 3.5561 19 8 2.8677 -1.6985 3.4704 20 7 2.7331 0.1220 4.7312 21 6 3.1977 -0.5537 5.8299 22 1 3.4474 -1.6017 5.7536 23 6 3.3475 0.1097 7.0416 24 7 3.0432 1.3847 7.1346 25 14 3.9799 -0.8113 8.5387 26 1 4.2475 -2.2255 8.1733 27 1 5.2354 -0.1776 9.0156 28 1 2.9602 -0.7626 9.6171 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7199 -1.2950 33 1 1.7516 -0.1585 -2.1369 34 1 3.9824 -0.4628 -0.4315 35 1 6.1098 -0.5387 -2.0838 36 1 5.9629 -2.1006 -1.2429 37 1 7.2509 -2.7802 -5.4642 38 1 8.4955 -1.5291 -5.1376 39 1 10.0867 -3.1580 -4.3488 40 1 9.2819 -4.0662 -5.6688 41 1 8.6988 -3.5330 -1.8997 42 1 7.1064 -4.2217 -2.3161 43 1 1.4496 -1.4978 1.4102 44 1 1.0870 0.6165 2.5525 45 1 2.7588 1.0464 2.1182 46 1 2.5091 1.0633 4.7998 47 1 3.1474 1.8478 7.9805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491454980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:11 Heat of formation + Delta-G solvation = -161.869329 kcal Electronic energy + Delta-G solvation = -27653.311176 eV Core-core repulsion = 23450.296871 eV Total energy + Delta-G solvation = -4203.014305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.17304 -39.51726 -38.49490 -37.34831 -36.74128 -34.18696 -33.78052 -31.83032 -31.36904 -30.83194 -29.31872 -28.26301 -26.45883 -25.56222 -23.95875 -23.08736 -21.66691 -21.07356 -20.49585 -19.36967 -17.99017 -17.68466 -17.46023 -16.77288 -16.29525 -16.07496 -16.05218 -15.59918 -15.40411 -15.06158 -14.93923 -14.62135 -14.19433 -14.08111 -13.83731 -13.39647 -13.22166 -13.14193 -12.75172 -12.68992 -12.55051 -12.50839 -12.24213 -12.01166 -11.79142 -11.74113 -11.63946 -11.46194 -11.12715 -11.11502 -11.03943 -10.39151 -10.28345 -10.27215 -9.84442 -9.76838 -9.58200 -9.02828 -8.57212 -8.18464 -8.02766 -6.48023 -3.89008 2.58031 2.66644 3.11753 3.23035 3.30006 3.55770 3.71161 3.83133 4.00382 4.12002 4.24152 4.48320 4.56093 4.67622 4.72373 4.76236 4.85643 4.95566 4.98582 5.00985 5.06843 5.15371 5.19069 5.21328 5.30565 5.34670 5.44836 5.53893 5.57662 5.63898 5.64271 5.70108 5.82688 5.93850 5.99928 6.19008 6.41458 6.45523 6.76217 7.07243 7.49554 7.51591 7.54987 7.99933 8.22533 8.54167 9.11759 9.47459 9.98408 10.69606 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.010709 B = 0.002245 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.031508 B =12468.607030 C =14635.817427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.136 3.864 5 N -0.710 5.710 6 C 0.513 3.487 7 O -0.531 6.531 8 C 0.040 3.960 9 O -0.348 6.348 10 C 0.054 3.946 11 H 0.080 0.920 12 C -0.152 4.152 13 C 0.046 3.954 14 O -0.373 6.373 15 C 0.022 3.978 16 N -0.664 5.664 17 C 0.050 3.950 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.410 0.590 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.354 0.646 44 H 0.045 0.955 45 H 0.085 0.915 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.714 1.043 -19.740 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 H 0.103 0.897 4 C 0.012 3.988 5 N -0.363 5.363 6 C 0.298 3.702 7 O -0.407 6.407 8 C -0.040 4.040 9 O -0.266 6.266 10 C -0.005 4.005 11 H 0.098 0.902 12 C -0.190 4.190 13 C -0.030 4.030 14 O -0.291 6.291 15 C -0.055 4.055 16 N -0.297 5.297 17 C -0.083 4.083 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.246 0.754 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.174 0.826 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.027 -0.183 -20.620 21.483 hybrid contribution -0.439 0.957 1.859 2.137 sum 5.588 0.774 -18.761 19.590 Atomic orbital electron populations 1.22434 0.96172 1.02795 1.02651 1.21856 0.93447 0.98297 0.90693 0.89746 1.21330 0.79733 1.01050 0.96701 1.45666 1.07863 1.59559 1.23260 1.20114 0.88932 0.78378 0.82792 1.90717 1.69893 1.46817 1.33256 1.22318 0.93077 0.98414 0.90218 1.88100 1.20057 1.77948 1.40459 1.23619 0.82261 0.97395 0.97226 0.90189 1.23218 0.99569 1.00276 0.95900 1.23554 0.95590 0.90161 0.93713 1.88918 1.74772 1.30178 1.35272 1.23788 0.98594 0.92131 0.90988 1.60189 1.57736 1.09230 1.02558 1.21721 1.00091 0.95604 0.90889 1.19807 0.85317 0.88248 0.84213 1.90538 1.55343 1.16238 1.84580 1.41879 1.57536 1.12438 1.08120 1.19745 1.39763 0.96479 0.86882 0.87864 1.25269 0.97629 0.95778 0.99280 1.69614 1.48602 1.08841 1.27190 0.85804 0.78276 0.79647 0.80656 1.19199 1.20718 1.20745 0.91927 0.91897 0.91812 0.91441 0.91312 0.75405 0.90113 0.89741 0.88826 0.89408 0.91903 0.88474 0.91540 0.88615 0.82583 0.93683 0.89639 0.77486 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 9.16 37.16 0.34 -1.32 16 2 C 0.07 0.70 2.75 -67.71 -0.19 0.52 16 3 H 0.08 0.80 7.80 -51.93 -0.40 0.40 16 4 C 0.14 1.51 5.37 -4.04 -0.02 1.49 16 5 N -0.71 -8.12 5.39 -60.29 -0.32 -8.45 16 6 C 0.51 6.75 7.91 -10.98 -0.09 6.66 16 7 O -0.53 -9.19 16.50 -14.35 -0.24 -9.42 16 8 C 0.04 0.40 6.28 36.01 0.23 0.63 16 9 O -0.35 -4.16 9.49 -55.14 -0.52 -4.69 16 10 C 0.05 0.47 3.51 -25.20 -0.09 0.38 16 11 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16 12 C -0.15 -1.16 6.90 -24.73 -0.17 -1.33 16 13 C 0.05 0.34 7.72 38.21 0.29 0.64 16 14 O -0.37 -4.11 11.52 -35.23 -0.41 -4.51 16 15 C 0.02 0.21 7.52 37.73 0.28 0.50 16 16 N -0.66 -9.16 5.31 -107.99 -0.57 -9.74 16 17 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16 18 C 0.44 9.66 7.82 -10.98 -0.09 9.57 16 19 O -0.58 -14.99 15.78 5.55 0.09 -14.91 16 20 N -0.56 -13.58 5.29 -10.96 -0.06 -13.64 16 21 C -0.30 -8.07 9.68 -14.93 -0.14 -8.22 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -23.84 13.05 55.50 0.72 -23.11 16 25 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 30 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.41 4.33 8.14 -40.82 -0.33 4.00 16 35 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 38 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 1.02 7.97 -51.93 -0.41 0.60 16 43 H 0.35 5.36 8.17 -39.29 -0.32 5.04 16 44 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 45 H 0.09 1.18 8.06 -51.93 -0.42 0.76 16 46 H 0.39 9.03 7.90 -40.82 -0.32 8.70 16 47 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 394.98 15.07 5.95 5.95 Total: -1.00 -34.35 394.98 -7.70 -42.04 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -7.55 Total: 14.22 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 0.24 Total: 10.73 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.23 Total: -54.94 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.08 Total: -33.53 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.35 -7.70 -42.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491454980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.826 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds