Wall clock time and date at job start Tue Mar 31 2020 04:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47380 * 2 1 4 4 C 1.53000 * 109.47280 * 239.99367 * 2 1 3 5 5 N 1.46504 * 109.47137 * 184.99956 * 4 2 1 6 6 C 1.34777 * 119.99538 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00616 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99434 * 180.02562 * 6 5 4 9 9 O 1.42895 * 109.46810 * 179.97438 * 8 6 5 10 10 C 1.42902 * 113.99975 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.43712 * 328.91334 * 10 9 8 12 12 C 1.54809 * 110.49013 * 206.22037 * 10 9 8 13 13 C 1.54991 * 102.09393 * 220.44351 * 12 10 9 14 14 O 1.44375 * 103.49298 * 37.02846 * 13 12 10 15 15 C 1.43751 * 106.97087 * 319.93979 * 14 13 12 16 16 N 1.46901 * 109.47135 * 119.99687 * 2 1 3 17 17 C 1.46902 * 110.99844 * 274.99848 * 16 2 1 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 2 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00057 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47191 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46534 * 120.00189 * 25 23 21 28 28 H 1.48498 * 109.47283 * 240.00132 * 25 23 21 29 29 H 1.08998 * 109.47251 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47292 * 300.00576 * 1 2 3 31 31 H 1.09001 * 109.46914 * 60.00062 * 1 2 3 32 32 H 1.08992 * 109.47023 * 305.00137 * 4 2 1 33 33 H 1.09002 * 109.46612 * 65.00112 * 4 2 1 34 34 H 0.96996 * 120.00009 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47016 * 299.99848 * 8 6 5 36 36 H 1.08997 * 109.47261 * 59.99934 * 8 6 5 37 37 H 1.08997 * 110.90741 * 338.64784 * 12 10 9 38 38 H 1.09007 * 110.90891 * 102.24617 * 12 10 9 39 39 H 1.08997 * 110.62051 * 278.52220 * 13 12 10 40 40 H 1.09005 * 110.61627 * 155.52492 * 13 12 10 41 41 H 1.09001 * 109.87544 * 267.08845 * 15 14 13 42 42 H 1.08996 * 110.00500 * 146.01073 * 15 14 13 43 43 H 1.00895 * 111.00207 * 38.95191 * 16 2 1 44 44 H 1.09004 * 109.47131 * 60.00016 * 17 16 2 45 45 H 1.09000 * 109.47732 * 300.00127 * 17 16 2 46 46 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 47 47 H 0.96996 * 120.00330 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.1731 -1.4285 -2.1910 7 8 3.5701 -1.8828 -3.1402 8 6 5.6750 -1.5371 -2.1303 9 8 6.1513 -2.2107 -3.2970 10 6 7.5712 -2.3665 -3.3393 11 1 8.0604 -1.5364 -2.8298 12 6 8.0614 -2.4717 -4.8040 13 6 9.1450 -3.5754 -4.7052 14 8 8.5992 -4.4978 -3.7379 15 6 7.9856 -3.7083 -2.7051 16 7 2.0196 -0.6924 1.1995 17 6 2.0824 0.2228 2.3469 18 6 2.5873 -0.5216 3.5561 19 8 2.8677 -1.6985 3.4704 20 7 2.7331 0.1220 4.7312 21 6 3.1977 -0.5537 5.8299 22 1 3.4474 -1.6017 5.7536 23 6 3.3475 0.1097 7.0416 24 7 3.0432 1.3847 7.1346 25 14 3.9799 -0.8113 8.5387 26 1 4.2475 -2.2255 8.1733 27 1 5.2354 -0.1776 9.0156 28 1 2.9602 -0.7626 9.6171 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7199 -1.2950 33 1 1.7516 -0.1585 -2.1369 34 1 3.9824 -0.4628 -0.4315 35 1 6.1098 -0.5387 -2.0838 36 1 5.9629 -2.1006 -1.2429 37 1 7.2509 -2.7802 -5.4642 38 1 8.4955 -1.5291 -5.1376 39 1 10.0867 -3.1580 -4.3488 40 1 9.2819 -4.0662 -5.6688 41 1 8.6988 -3.5330 -1.8997 42 1 7.1064 -4.2217 -2.3161 43 1 1.4496 -1.4978 1.4102 44 1 1.0870 0.6165 2.5525 45 1 2.7588 1.0464 2.1182 46 1 2.5091 1.0633 4.7998 47 1 3.1474 1.8478 7.9805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491454980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:10 Heat of formation + Delta-G solvation = -190.122579 kcal Electronic energy + Delta-G solvation = -27654.536329 eV Core-core repulsion = 23450.296871 eV Total energy + Delta-G solvation = -4204.239457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.01559 -40.41439 -40.09896 -38.32822 -37.74994 -35.95529 -35.02246 -33.26045 -32.53291 -31.94632 -30.01097 -29.06825 -27.94803 -26.52975 -25.55311 -23.71415 -22.33073 -21.99580 -21.45229 -21.08380 -19.90258 -18.45058 -18.38979 -17.77450 -17.34434 -17.12750 -17.03615 -16.65569 -16.39287 -16.36797 -16.12120 -15.81719 -15.66316 -15.22870 -14.91940 -14.74552 -14.37555 -13.91780 -13.74797 -13.64690 -13.52632 -13.43052 -13.36860 -13.17115 -13.05799 -12.78108 -12.73159 -12.51497 -12.39353 -12.37915 -12.11463 -11.89150 -11.72455 -11.49564 -10.98538 -10.88272 -10.49851 -10.31903 -10.02049 -9.98993 -9.34008 -8.45636 -5.93533 1.37027 1.42997 1.56238 1.59095 1.84109 2.08783 2.29670 2.84140 2.93122 3.01795 3.22481 3.48227 3.54583 3.80218 3.85777 3.86355 4.01637 4.11228 4.19555 4.20904 4.28846 4.34078 4.36626 4.37550 4.51608 4.53920 4.63765 4.66365 4.72540 4.78239 4.79623 4.89124 4.89941 5.00683 5.04064 5.26209 5.42983 5.48097 5.79919 5.90542 6.06348 6.11714 6.36146 6.61160 6.62440 7.15269 7.26181 7.59769 8.15190 8.71764 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.010709 B = 0.002245 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.031508 B =12468.607030 C =14635.817427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.104 0.896 4 C 0.136 3.864 5 N -0.701 5.701 6 C 0.507 3.493 7 O -0.581 6.581 8 C 0.041 3.959 9 O -0.379 6.379 10 C 0.050 3.950 11 H 0.111 0.889 12 C -0.150 4.150 13 C 0.043 3.957 14 O -0.405 6.405 15 C 0.018 3.982 16 N -0.674 5.674 17 C 0.066 3.934 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.330 4.330 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.275 1.275 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.416 0.584 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.344 0.656 44 H 0.067 0.933 45 H 0.112 0.888 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 2.886 -19.804 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.032 4.032 3 H 0.122 0.878 4 C 0.012 3.988 5 N -0.354 5.354 6 C 0.293 3.707 7 O -0.461 6.461 8 C -0.038 4.038 9 O -0.298 6.298 10 C -0.008 4.008 11 H 0.128 0.872 12 C -0.188 4.188 13 C -0.033 4.033 14 O -0.325 6.325 15 C -0.059 4.059 16 N -0.306 5.306 17 C -0.066 4.066 18 C 0.226 3.774 19 O -0.510 6.510 20 N -0.212 5.212 21 C -0.459 4.459 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.253 0.747 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.163 0.837 44 H 0.085 0.915 45 H 0.130 0.870 46 H 0.231 0.769 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.833 1.707 -20.675 21.842 hybrid contribution -0.704 0.355 1.808 1.973 sum 6.129 2.062 -18.866 19.944 Atomic orbital electron populations 1.22392 0.95004 1.02749 1.03542 1.21858 0.94291 0.98564 0.88487 0.87789 1.21359 0.79558 1.00391 0.97520 1.45673 1.08088 1.58700 1.22937 1.20729 0.90329 0.77441 0.82159 1.90689 1.71124 1.49057 1.35202 1.22422 0.90908 1.00343 0.90163 1.88071 1.22002 1.78471 1.41235 1.23849 0.80986 0.97810 0.98170 0.87159 1.23249 0.99040 1.01563 0.94921 1.23782 0.96175 0.89712 0.93608 1.88874 1.75243 1.32026 1.36308 1.23849 0.98319 0.92315 0.91377 1.60167 1.58420 1.09077 1.02933 1.21582 1.01370 0.95287 0.88365 1.20955 0.83279 0.87983 0.85204 1.90513 1.56604 1.18414 1.85452 1.41941 1.58257 1.12614 1.08359 1.19654 1.41705 0.95867 0.88709 0.90470 1.25977 0.97413 0.96589 1.01279 1.69665 1.48787 1.09568 1.28063 0.84923 0.78170 0.78070 0.77510 1.19927 1.19629 1.19827 0.92538 0.91862 0.89989 0.93208 0.90349 0.74653 0.86684 0.88598 0.90965 0.86789 0.89688 0.87525 0.89725 0.90733 0.83653 0.91540 0.87019 0.76943 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 9.16 71.98 0.66 -2.19 16 2 C 0.08 1.43 2.75 44.91 0.12 1.55 16 3 H 0.10 1.57 7.80 -2.39 -0.02 1.56 16 4 C 0.14 2.85 5.37 86.38 0.46 3.32 16 5 N -0.70 -15.22 5.39 -463.06 -2.50 -17.72 16 6 C 0.51 13.13 7.91 87.66 0.69 13.82 16 7 O -0.58 -20.53 16.50 16.02 0.26 -20.26 16 8 C 0.04 0.78 6.28 71.24 0.45 1.22 16 9 O -0.38 -8.90 9.49 -129.94 -1.23 -10.14 16 10 C 0.05 0.81 3.51 31.58 0.11 0.92 16 11 H 0.11 1.09 7.86 -2.39 -0.02 1.07 16 12 C -0.15 -2.10 6.90 31.89 0.22 -1.88 16 13 C 0.04 0.58 7.72 72.66 0.56 1.14 16 14 O -0.40 -8.86 11.52 -148.98 -1.72 -10.58 16 15 C 0.02 0.35 7.52 72.35 0.54 0.89 16 16 N -0.67 -17.52 5.31 -495.57 -2.63 -20.15 16 17 C 0.07 1.90 5.97 85.56 0.51 2.41 16 18 C 0.44 19.13 7.82 87.66 0.69 19.82 16 19 O -0.62 -32.51 15.78 -3.07 -0.05 -32.56 16 20 N -0.57 -27.71 5.29 -306.98 -1.62 -29.34 16 21 C -0.33 -18.04 9.68 84.04 0.81 -17.23 16 22 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 23 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 24 N -0.92 -48.01 13.05 21.66 0.28 -47.72 16 25 Si 0.99 41.87 29.55 68.60 2.03 43.89 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 29 H 0.06 0.98 8.13 -2.39 -0.02 0.97 16 30 H 0.06 1.04 7.45 -2.39 -0.02 1.02 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.42 8.00 8.14 -92.71 -0.75 7.25 16 35 H 0.12 1.36 8.10 -2.39 -0.02 1.34 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 38 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 1.66 7.97 -2.39 -0.02 1.64 16 43 H 0.34 10.22 8.17 -89.70 -0.73 9.49 16 44 H 0.07 1.69 7.44 -2.38 -0.02 1.67 16 45 H 0.11 2.70 8.06 -2.39 -0.02 2.68 16 46 H 0.40 18.08 7.90 -92.71 -0.73 17.35 16 47 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 Total: -1.00 -76.72 394.98 -2.09 -78.81 By element: Atomic # 1 Polarization: 43.40 SS G_CDS: -1.21 Total: 42.18 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 6.30 Total: 23.59 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -6.47 Total: -114.94 kcal Atomic # 8 Polarization: -70.81 SS G_CDS: -2.73 Total: -73.54 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -76.72 -2.09 -78.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491454980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.311 kcal (2) G-P(sol) polarization free energy of solvation -76.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds