Wall clock time and date at job start Tue Mar 31 2020 04:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47203 * 2 1 4 4 C 1.52999 * 109.46956 * 240.00162 * 2 1 3 5 5 N 1.46499 * 109.47143 * 184.99912 * 4 2 1 6 6 C 1.34777 * 119.99913 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00252 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99833 * 180.02562 * 6 5 4 9 9 O 1.42901 * 109.47255 * 179.97438 * 8 6 5 10 10 C 1.42904 * 114.00207 * 180.02562 * 9 8 6 11 11 H 1.08995 * 111.01752 * 25.77524 * 10 9 8 12 12 C 1.55305 * 111.12473 * 150.00103 * 10 9 8 13 13 C 1.54382 * 102.43395 * 152.15146 * 12 10 9 14 14 O 1.43232 * 107.59109 * 338.54226 * 13 12 10 15 15 C 1.43649 * 109.97368 * 358.28680 * 14 13 12 16 16 N 1.46902 * 109.47286 * 120.00554 * 2 1 3 17 17 C 1.46902 * 110.99659 * 275.00133 * 16 2 1 18 18 C 1.50702 * 109.46847 * 180.02562 * 17 16 2 19 19 O 1.21285 * 120.00075 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99589 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99783 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00123 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99900 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99824 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00027 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47353 * 90.00454 * 25 23 21 27 27 H 1.48500 * 109.47184 * 210.00329 * 25 23 21 28 28 H 1.48500 * 109.47327 * 330.00232 * 25 23 21 29 29 H 1.08997 * 109.46781 * 299.99705 * 1 2 3 30 30 H 1.08993 * 109.46756 * 59.99745 * 1 2 3 31 31 H 1.09001 * 109.46768 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46974 * 65.00228 * 4 2 1 33 33 H 1.09000 * 109.47351 * 305.00170 * 4 2 1 34 34 H 0.96996 * 120.00118 * 0.02562 * 5 4 2 35 35 H 1.09006 * 109.47374 * 59.99790 * 8 6 5 36 36 H 1.08999 * 109.47509 * 299.99793 * 8 6 5 37 37 H 1.09002 * 110.85041 * 33.85992 * 12 10 9 38 38 H 1.09001 * 110.84389 * 270.44128 * 12 10 9 39 39 H 1.09009 * 109.82643 * 98.05629 * 13 12 10 40 40 H 1.08995 * 109.83122 * 219.02553 * 13 12 10 41 41 H 1.08999 * 110.31137 * 143.34271 * 15 14 13 42 42 H 1.09000 * 110.31061 * 265.41699 * 15 14 13 43 43 H 1.00894 * 111.00262 * 151.04813 * 16 2 1 44 44 H 1.09003 * 109.46856 * 299.99227 * 17 16 2 45 45 H 1.09000 * 109.47490 * 59.99850 * 17 16 2 46 46 H 0.97001 * 120.00528 * 359.97438 * 20 18 17 47 47 H 0.96999 * 120.00217 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.1730 -1.4282 -2.1913 7 8 3.5700 -1.8832 -3.1400 8 6 5.6749 -1.5369 -2.1307 9 8 6.1513 -2.2104 -3.2976 10 6 7.5711 -2.3671 -3.3394 11 1 7.9937 -2.3703 -2.3347 12 6 7.9698 -3.6501 -4.1185 13 6 9.3661 -3.2853 -4.6671 14 8 9.4661 -1.8565 -4.6807 15 6 8.2350 -1.2741 -4.2240 16 7 2.0198 -0.6926 1.1994 17 6 2.0825 0.2224 2.3469 18 6 2.5886 -0.5218 3.5556 19 8 2.8690 -1.6987 3.4698 20 7 2.7297 0.1205 4.7321 21 6 3.1896 -0.5566 5.8319 22 1 3.4385 -1.6047 5.7557 23 6 3.3346 0.1055 7.0450 24 7 3.7749 -0.5437 8.0992 25 14 2.9035 1.9182 7.1770 26 1 1.4741 2.0610 7.5535 27 1 3.7545 2.5551 8.2139 28 1 3.1392 2.5797 5.8685 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1582 -2.1369 33 1 1.6054 -1.7198 -1.2952 34 1 3.9824 -0.4628 -0.4317 35 1 5.9630 -2.1005 -1.2433 36 1 6.1099 -0.5385 -2.0841 37 1 7.2712 -3.8423 -4.9328 38 1 8.0281 -4.5081 -3.4489 39 1 10.1380 -3.7039 -4.0212 40 1 9.4787 -3.6736 -5.6793 41 1 8.4355 -0.3803 -3.6333 42 1 7.5942 -1.0308 -5.0715 43 1 2.9174 -1.1206 1.0287 44 1 2.7590 1.0460 2.1182 45 1 1.0871 0.6161 2.5526 46 1 2.5059 1.0619 4.8007 47 1 3.8765 -0.0815 8.9460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491454981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:15 Heat of formation + Delta-G solvation = -149.729807 kcal Electronic energy + Delta-G solvation = -27647.025640 eV Core-core repulsion = 23444.537745 eV Total energy + Delta-G solvation = -4202.487895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33258 -39.74557 -38.68061 -37.58247 -36.91093 -34.27271 -33.87021 -31.98132 -31.76058 -31.14845 -29.53353 -28.41039 -26.82275 -25.62748 -23.80947 -22.90821 -22.00286 -20.93652 -20.76357 -19.49750 -18.52863 -17.89680 -17.76722 -16.87462 -16.49292 -16.34127 -16.08653 -15.60290 -15.45001 -15.30342 -15.17806 -14.85169 -14.33808 -14.20112 -13.89008 -13.80795 -13.27576 -13.02379 -12.86842 -12.82717 -12.73825 -12.61650 -12.26487 -12.10719 -12.01559 -11.97489 -11.90729 -11.64814 -11.25851 -11.21754 -11.01757 -10.65765 -10.18554 -10.06353 -10.04002 -9.90750 -9.64382 -9.36564 -8.68492 -8.32270 -8.24445 -6.37447 -3.89301 2.33115 2.37789 2.96024 3.01537 3.10041 3.27240 3.63915 3.66412 3.91581 3.95514 4.04224 4.32353 4.38715 4.46258 4.54193 4.67618 4.68312 4.70667 4.79849 4.83240 4.99344 5.12032 5.15016 5.18522 5.26460 5.32961 5.40454 5.44293 5.47236 5.53538 5.59787 5.62362 5.74606 5.83317 5.84942 6.04672 6.22031 6.42125 6.60613 6.94490 7.13579 7.39458 7.51037 7.92415 8.07294 8.52400 8.88081 9.35244 9.74546 10.75506 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.002181 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.824450 B =12836.120697 C =14487.545329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.050 0.950 4 C 0.120 3.880 5 N -0.730 5.730 6 C 0.518 3.482 7 O -0.518 6.518 8 C 0.039 3.961 9 O -0.343 6.343 10 C 0.052 3.948 11 H 0.087 0.913 12 C -0.155 4.155 13 C 0.052 3.948 14 O -0.380 6.380 15 C 0.031 3.969 16 N -0.664 5.664 17 C 0.046 3.954 18 C 0.447 3.553 19 O -0.564 6.564 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.879 5.879 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.400 0.600 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.348 0.652 44 H 0.045 0.955 45 H 0.090 0.910 46 H 0.370 0.630 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.565 3.665 -22.499 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.038 4.038 3 H 0.068 0.932 4 C -0.003 4.003 5 N -0.385 5.385 6 C 0.303 3.697 7 O -0.393 6.393 8 C -0.041 4.041 9 O -0.261 6.261 10 C -0.007 4.007 11 H 0.105 0.895 12 C -0.193 4.193 13 C -0.024 4.024 14 O -0.299 6.299 15 C -0.046 4.046 16 N -0.299 5.299 17 C -0.086 4.086 18 C 0.233 3.767 19 O -0.446 6.446 20 N -0.228 5.228 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.519 5.519 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.235 0.765 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.170 0.830 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.203 0.797 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.821 2.305 -23.077 23.504 hybrid contribution 0.655 2.201 0.919 2.474 sum 4.477 4.506 -22.157 23.050 Atomic orbital electron populations 1.21743 0.93219 1.03141 1.01604 1.21824 0.97264 0.95885 0.88876 0.93249 1.21627 0.78707 1.02291 0.97710 1.45918 1.08320 1.60585 1.23699 1.20114 0.88995 0.78061 0.82564 1.90742 1.69837 1.45951 1.32749 1.22352 0.92683 0.98844 0.90200 1.88038 1.19795 1.77725 1.40545 1.23991 0.81695 0.95220 0.99797 0.89501 1.23180 0.97060 0.97668 1.01379 1.23104 0.96337 0.81613 1.01392 1.88439 1.34810 1.18984 1.87671 1.23925 0.86077 0.96458 0.98146 1.60105 1.34906 1.32206 1.02714 1.21798 1.01601 0.93873 0.91358 1.19683 0.84764 0.88238 0.84021 1.90574 1.53903 1.15810 1.84344 1.42210 1.59986 1.11030 1.09596 1.19427 1.40419 0.97937 0.85722 0.86266 1.25053 0.97418 0.98463 0.95237 1.69618 1.44856 1.36623 1.00825 0.86664 0.79388 0.84825 0.78429 1.19558 1.20160 1.19571 0.91975 0.92379 0.91362 0.90609 0.90070 0.76522 0.89382 0.89934 0.89085 0.89110 0.90765 0.90843 0.89368 0.90903 0.83049 0.93720 0.89205 0.79688 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.42 37.16 0.35 -0.97 16 2 C 0.07 0.72 2.81 -67.71 -0.19 0.53 16 3 H 0.05 0.44 7.80 -51.93 -0.41 0.04 16 4 C 0.12 1.22 5.31 -4.04 -0.02 1.19 16 5 N -0.73 -7.06 4.99 -60.30 -0.30 -7.36 16 6 C 0.52 5.95 7.91 -10.98 -0.09 5.87 16 7 O -0.52 -8.18 16.50 -14.35 -0.24 -8.42 16 8 C 0.04 0.34 6.25 36.01 0.23 0.56 16 9 O -0.34 -3.62 9.71 -55.14 -0.54 -4.16 16 10 C 0.05 0.41 3.63 -24.18 -0.09 0.33 16 11 H 0.09 0.56 7.83 -51.93 -0.41 0.16 16 12 C -0.16 -1.11 6.74 -24.78 -0.17 -1.28 16 13 C 0.05 0.36 7.80 37.88 0.30 0.66 16 14 O -0.38 -3.61 11.36 -35.23 -0.40 -4.01 16 15 C 0.03 0.25 7.55 38.49 0.29 0.54 16 16 N -0.66 -9.13 5.93 -107.98 -0.64 -9.77 16 17 C 0.05 0.69 5.97 -4.97 -0.03 0.66 16 18 C 0.45 9.56 7.82 -10.98 -0.09 9.48 16 19 O -0.56 -14.49 15.78 5.55 0.09 -14.40 16 20 N -0.59 -13.37 5.09 -10.96 -0.06 -13.43 16 21 C -0.31 -8.40 10.16 -14.93 -0.15 -8.55 16 22 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.13 13.96 55.50 0.77 -24.36 16 25 Si 0.88 18.72 27.74 -169.99 -4.71 14.01 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 28 H -0.27 -5.17 6.52 56.52 0.37 -4.80 16 29 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.40 3.19 7.37 -40.82 -0.30 2.89 16 35 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.35 4.89 6.41 -39.29 -0.25 4.64 16 44 H 0.04 0.55 8.06 -51.93 -0.42 0.14 16 45 H 0.09 1.21 7.44 -51.93 -0.39 0.82 16 46 H 0.37 7.33 5.76 -40.82 -0.24 7.10 16 47 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -35.80 390.13 -7.32 -43.11 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -7.42 Total: 12.87 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 0.24 Total: 10.02 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.22 Total: -54.91 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -1.08 Total: -30.98 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.71 Total: 14.01 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.80 -7.32 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491454981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.618 kcal (2) G-P(sol) polarization free energy of solvation -35.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds