Wall clock time and date at job start Tue Mar 31 2020 04:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47210 * 2 1 4 4 C 1.52999 * 109.47029 * 119.99367 * 2 1 3 5 5 N 1.46499 * 109.47143 * 175.00040 * 4 2 1 6 6 C 1.34777 * 119.99913 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00252 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99833 * 180.02562 * 6 5 4 9 9 O 1.42901 * 109.47255 * 179.97438 * 8 6 5 10 10 C 1.42904 * 114.00207 * 180.02562 * 9 8 6 11 11 H 1.08995 * 111.01752 * 25.77524 * 10 9 8 12 12 C 1.55305 * 111.12473 * 150.00103 * 10 9 8 13 13 C 1.54382 * 102.43395 * 152.15146 * 12 10 9 14 14 O 1.43232 * 107.59109 * 338.54226 * 13 12 10 15 15 C 1.43649 * 109.97368 * 358.28680 * 14 13 12 16 16 N 1.46900 * 109.47430 * 239.99576 * 2 1 3 17 17 C 1.46896 * 110.99844 * 84.99604 * 16 2 1 18 18 C 1.50703 * 109.46911 * 179.97438 * 17 16 2 19 19 O 1.21290 * 120.00002 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99993 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00069 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00043 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99969 * 180.02562 * 21 20 18 24 24 N 1.31421 * 119.99881 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00331 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47591 * 89.99641 * 25 23 21 27 27 H 1.48502 * 109.47409 * 210.00122 * 25 23 21 28 28 H 1.48501 * 109.46751 * 329.99482 * 25 23 21 29 29 H 1.09001 * 109.47627 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47173 * 300.00513 * 1 2 3 31 31 H 1.09002 * 109.47546 * 60.00568 * 1 2 3 32 32 H 1.08999 * 109.46974 * 55.00356 * 4 2 1 33 33 H 1.09000 * 109.47351 * 295.00298 * 4 2 1 34 34 H 0.96996 * 120.00118 * 0.02562 * 5 4 2 35 35 H 1.09006 * 109.47374 * 59.99790 * 8 6 5 36 36 H 1.08999 * 109.47509 * 299.99793 * 8 6 5 37 37 H 1.09002 * 110.85041 * 33.85992 * 12 10 9 38 38 H 1.09001 * 110.84389 * 270.44128 * 12 10 9 39 39 H 1.09009 * 109.82643 * 98.05629 * 13 12 10 40 40 H 1.08995 * 109.83122 * 219.02553 * 13 12 10 41 41 H 1.08999 * 110.31137 * 143.34271 * 15 14 13 42 42 H 1.09000 * 110.31061 * 265.41699 * 15 14 13 43 43 H 1.00903 * 110.99709 * 321.04489 * 16 2 1 44 44 H 1.08992 * 109.47533 * 300.00369 * 17 16 2 45 45 H 1.09002 * 109.46841 * 60.00422 * 17 16 2 46 46 H 0.96998 * 120.00377 * 0.02562 * 20 18 17 47 47 H 0.96996 * 119.99408 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1729 -1.4290 2.1909 7 8 3.5698 -1.8838 3.1397 8 6 5.6748 -1.5366 2.1308 9 8 6.1512 -2.2102 3.2976 10 6 7.5712 -2.3650 3.3405 11 1 8.0667 -1.5907 2.7549 12 6 8.0890 -2.3771 4.8046 13 6 9.3711 -3.2302 4.6967 14 8 9.2628 -4.0265 3.5110 15 6 7.9998 -3.7841 2.8709 16 7 2.0197 -0.6926 -1.1994 17 6 2.0824 0.2224 -2.3468 18 6 2.5885 -0.5218 -3.5556 19 8 2.8689 -1.6987 -3.4697 20 7 2.7296 0.1204 -4.7321 21 6 3.1896 -0.5567 -5.8319 22 1 3.4393 -1.6047 -5.7554 23 6 3.3355 0.1055 -7.0446 24 7 3.7769 -0.5435 -8.0987 25 14 2.9058 1.9186 -7.1764 26 1 4.1070 2.7358 -6.8692 27 1 2.4424 2.2186 -8.5551 28 1 1.8260 2.2428 -6.2099 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.6053 -1.7197 1.2953 33 1 1.7515 -0.1581 2.1370 34 1 3.9824 -0.4621 0.4321 35 1 6.1092 -0.5378 2.0856 36 1 5.9637 -2.0990 1.2429 37 1 7.3642 -2.8484 5.4685 38 1 8.3222 -1.3672 5.1419 39 1 10.2432 -2.5799 4.6270 40 1 9.4595 -3.8769 5.5696 41 1 8.1147 -3.8049 1.7872 42 1 7.2667 -4.5261 3.1874 43 1 1.4496 -1.4980 -1.4099 44 1 1.0871 0.6161 -2.5525 45 1 2.7588 1.0460 -2.1182 46 1 2.5058 1.0617 -4.8007 47 1 3.8784 -0.0812 -8.9454 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491454982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:19 Heat of formation + Delta-G solvation = -154.323359 kcal Electronic energy + Delta-G solvation = -27649.032292 eV Core-core repulsion = 23446.345205 eV Total energy + Delta-G solvation = -4202.687087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.16769 -39.56826 -38.67271 -37.46776 -36.84710 -34.24982 -33.85121 -31.90620 -31.75253 -31.00918 -29.43085 -28.28173 -26.63994 -25.61107 -23.78346 -22.83289 -21.92449 -21.15670 -20.57457 -19.48358 -18.48032 -17.78414 -17.54069 -16.71706 -16.30872 -16.25135 -15.96616 -15.64084 -15.32743 -15.04600 -14.99420 -14.90998 -14.37102 -14.03259 -13.80721 -13.67317 -13.31702 -13.14152 -12.85729 -12.75216 -12.68512 -12.52209 -12.46222 -12.20687 -11.95142 -11.91883 -11.82770 -11.61102 -11.22982 -11.15107 -11.12004 -10.65832 -10.08325 -10.03895 -9.88625 -9.81428 -9.64139 -9.08719 -8.70642 -8.30804 -8.24047 -6.37228 -3.89120 2.51532 2.57695 2.96214 3.00858 3.09892 3.41871 3.65524 3.78113 3.95368 4.02597 4.04331 4.43551 4.48477 4.61094 4.63581 4.72012 4.76762 4.82718 4.89817 4.91912 4.97743 5.06966 5.15683 5.28466 5.32386 5.37533 5.41150 5.46473 5.51732 5.52100 5.58123 5.60882 5.70554 5.80177 5.84782 5.93863 6.35831 6.51774 6.71933 6.93736 7.41643 7.48505 7.51345 8.07694 8.16833 8.52608 8.88440 9.35547 9.74942 10.75759 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.011518 B = 0.002234 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.397058 B =12528.465835 C =14373.785902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.136 3.864 5 N -0.710 5.710 6 C 0.514 3.486 7 O -0.531 6.531 8 C 0.040 3.960 9 O -0.344 6.344 10 C 0.053 3.947 11 H 0.085 0.915 12 C -0.155 4.155 13 C 0.052 3.948 14 O -0.379 6.379 15 C 0.030 3.970 16 N -0.664 5.664 17 C 0.047 3.953 18 C 0.448 3.552 19 O -0.564 6.564 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.410 0.590 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.356 0.644 44 H 0.046 0.954 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 5.081 22.636 23.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 H 0.103 0.897 4 C 0.012 3.988 5 N -0.364 5.364 6 C 0.298 3.702 7 O -0.407 6.407 8 C -0.040 4.040 9 O -0.262 6.262 10 C -0.006 4.006 11 H 0.103 0.897 12 C -0.192 4.192 13 C -0.024 4.024 14 O -0.299 6.299 15 C -0.047 4.047 16 N -0.297 5.297 17 C -0.086 4.086 18 C 0.233 3.767 19 O -0.446 6.446 20 N -0.229 5.229 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.519 5.519 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.246 0.754 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.176 0.824 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.479 3.807 23.377 23.939 hybrid contribution -1.078 2.050 -1.179 2.599 sum 2.401 5.858 22.198 23.083 Atomic orbital electron populations 1.22436 0.96111 1.02894 1.02646 1.21859 0.93484 0.98280 0.90650 0.89738 1.21328 0.79748 1.01104 0.96640 1.45657 1.07844 1.59554 1.23319 1.20105 0.88919 0.78359 0.82776 1.90718 1.69891 1.46805 1.33263 1.22345 0.93031 0.98496 0.90086 1.88033 1.19675 1.78010 1.40484 1.23964 0.82139 0.97336 0.97188 0.89676 1.23172 0.97593 1.01964 0.96516 1.23088 0.97229 0.93522 0.88608 1.88446 1.36476 1.65650 1.39296 1.23956 0.86057 0.96296 0.98416 1.60183 1.57885 1.09200 1.02454 1.21755 1.00129 0.95741 0.90977 1.19697 0.84933 0.88271 0.83784 1.90579 1.53851 1.15953 1.84231 1.42213 1.59983 1.11112 1.09574 1.19424 1.40230 0.98009 0.85811 0.86274 1.25056 0.97442 0.98434 0.95260 1.69625 1.44883 1.36567 1.00870 0.86665 0.78957 0.85106 0.78579 1.19593 1.20167 1.19575 0.91832 0.91756 0.91946 0.91369 0.91264 0.75406 0.90031 0.89553 0.89126 0.89350 0.90912 0.90928 0.89097 0.90796 0.82396 0.93553 0.89508 0.79715 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.16 37.15 0.34 -1.17 16 2 C 0.07 0.64 2.75 -67.72 -0.19 0.46 16 3 H 0.08 0.71 7.80 -51.93 -0.40 0.31 16 4 C 0.14 1.40 5.37 -4.04 -0.02 1.38 16 5 N -0.71 -7.64 5.39 -60.30 -0.32 -7.97 16 6 C 0.51 6.43 7.91 -10.98 -0.09 6.35 16 7 O -0.53 -8.83 16.50 -14.35 -0.24 -9.07 16 8 C 0.04 0.39 6.25 36.01 0.23 0.61 16 9 O -0.34 -3.91 9.71 -55.14 -0.54 -4.45 16 10 C 0.05 0.45 3.63 -24.18 -0.09 0.37 16 11 H 0.09 0.59 7.83 -51.93 -0.41 0.18 16 12 C -0.15 -1.14 6.74 -24.78 -0.17 -1.31 16 13 C 0.05 0.39 7.80 37.88 0.30 0.68 16 14 O -0.38 -3.97 11.36 -35.23 -0.40 -4.37 16 15 C 0.03 0.28 7.55 38.49 0.29 0.57 16 16 N -0.66 -8.55 5.31 -108.00 -0.57 -9.12 16 17 C 0.05 0.66 5.97 -4.98 -0.03 0.63 16 18 C 0.45 9.38 7.82 -10.99 -0.09 9.29 16 19 O -0.56 -14.26 15.78 5.55 0.09 -14.18 16 20 N -0.59 -13.26 5.09 -10.96 -0.06 -13.31 16 21 C -0.31 -8.36 10.16 -14.93 -0.15 -8.51 16 22 H 0.12 3.75 7.39 -52.48 -0.39 3.36 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 24 N -0.88 -25.13 13.96 55.50 0.77 -24.36 16 25 Si 0.88 18.67 27.74 -169.99 -4.71 13.96 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.41 4.03 8.14 -40.82 -0.33 3.70 16 35 H 0.08 0.57 8.12 -51.93 -0.42 0.14 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.36 5.07 8.17 -39.29 -0.32 4.75 16 44 H 0.05 0.58 7.43 -51.93 -0.39 0.20 16 45 H 0.09 1.05 8.06 -51.93 -0.42 0.64 16 46 H 0.37 7.26 5.76 -40.82 -0.24 7.02 16 47 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 392.18 15.07 5.91 5.91 Total: -1.00 -35.24 392.18 -7.35 -42.59 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -7.52 Total: 14.00 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 0.24 Total: 10.36 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.18 Total: -54.76 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.08 Total: -32.06 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.71 Total: 13.96 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.24 -7.35 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491454982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.735 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds