Wall clock time and date at job start Tue Mar 31 2020 04:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46588 * 2 1 4 4 C 1.52997 * 109.46863 * 119.99708 * 2 1 3 5 5 N 1.46501 * 109.47126 * 174.99868 * 4 2 1 6 6 C 1.34772 * 120.00238 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00189 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00003 * 180.02562 * 6 5 4 9 9 O 1.42896 * 109.47531 * 179.97438 * 8 6 5 10 10 C 1.42898 * 114.00569 * 179.97438 * 9 8 6 11 11 H 1.09000 * 110.54079 * 328.84157 * 10 9 8 12 12 C 1.54807 * 110.49229 * 206.22403 * 10 9 8 13 13 C 1.54994 * 102.09494 * 220.44749 * 12 10 9 14 14 O 1.44380 * 103.49110 * 37.01885 * 13 12 10 15 15 C 1.43739 * 106.97820 * 319.94499 * 14 13 12 16 16 N 1.46897 * 109.47140 * 239.99828 * 2 1 3 17 17 C 1.46901 * 110.99806 * 84.99789 * 16 2 1 18 18 C 1.50700 * 109.47112 * 179.97438 * 17 16 2 19 19 O 1.21293 * 120.00127 * 0.02562 * 18 17 16 20 20 N 1.34783 * 120.00040 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99843 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99880 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99723 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00174 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99726 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47555 * 90.00152 * 25 23 21 27 27 H 1.48504 * 109.47088 * 209.99770 * 25 23 21 28 28 H 1.48504 * 109.47405 * 329.99921 * 25 23 21 29 29 H 1.08998 * 109.46588 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47054 * 299.99803 * 1 2 3 31 31 H 1.08999 * 109.46899 * 60.00006 * 1 2 3 32 32 H 1.09005 * 109.46812 * 55.00400 * 4 2 1 33 33 H 1.08993 * 109.47591 * 294.99906 * 4 2 1 34 34 H 0.97003 * 119.99793 * 0.02562 * 5 4 2 35 35 H 1.09008 * 109.47577 * 59.99847 * 8 6 5 36 36 H 1.09000 * 109.47184 * 300.00020 * 8 6 5 37 37 H 1.09005 * 110.90346 * 338.64483 * 12 10 9 38 38 H 1.09000 * 110.90998 * 102.24219 * 12 10 9 39 39 H 1.08998 * 110.61564 * 278.52047 * 13 12 10 40 40 H 1.08997 * 110.62119 * 155.52521 * 13 12 10 41 41 H 1.09004 * 109.87903 * 267.08704 * 15 14 13 42 42 H 1.08997 * 110.00609 * 146.00467 * 15 14 13 43 43 H 1.00892 * 111.00074 * 208.95144 * 16 2 1 44 44 H 1.09000 * 109.47603 * 300.00308 * 17 16 2 45 45 H 1.09005 * 109.47102 * 60.00127 * 17 16 2 46 46 H 0.97003 * 119.99613 * 359.97438 * 20 18 17 47 47 H 0.97001 * 120.00380 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.1730 -1.4291 2.1908 7 8 3.5699 -1.8849 3.1391 8 6 5.6749 -1.5368 2.1307 9 8 6.1513 -2.2104 3.2974 10 6 7.5712 -2.3663 3.3396 11 1 7.9755 -2.4630 2.3320 12 6 7.9561 -3.5957 4.1981 13 6 9.1918 -3.0750 4.9753 14 8 8.8616 -1.6963 5.2485 15 6 8.2228 -1.1763 4.0705 16 7 2.0197 -0.6925 -1.1994 17 6 2.0825 0.2226 -2.3469 18 6 2.5885 -0.5215 -3.5557 19 8 2.8689 -1.6985 -3.4699 20 7 2.7296 0.1208 -4.7322 21 6 3.1895 -0.5563 -5.8320 22 1 3.4391 -1.6043 -5.7556 23 6 3.3344 0.1058 -7.0450 24 7 3.0312 1.3811 -7.1378 25 14 3.9603 -0.8169 -8.5437 26 1 2.8111 -1.3990 -9.2823 27 1 4.6952 0.1203 -9.4308 28 1 4.8723 -1.9056 -8.1096 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 3.9825 -0.4622 0.4320 35 1 6.1094 -0.5380 2.0854 36 1 5.9637 -2.0991 1.2427 37 1 7.1496 -3.8604 4.8820 38 1 8.2225 -4.4432 3.5665 39 1 10.0883 -3.1400 4.3588 40 1 9.3227 -3.6297 5.9044 41 1 8.9637 -0.7053 3.4244 42 1 7.4596 -0.4500 4.3498 43 1 2.9173 -1.1204 -1.0287 44 1 1.0871 0.6163 -2.5525 45 1 2.7589 1.0462 -2.1182 46 1 2.5050 1.0620 -4.8008 47 1 3.1320 1.8432 -7.9847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491454983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:24 Heat of formation + Delta-G solvation = -157.248992 kcal Electronic energy + Delta-G solvation = -27638.570595 eV Core-core repulsion = 23435.756643 eV Total energy + Delta-G solvation = -4202.813952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32624 -39.70799 -38.50330 -37.46015 -36.80591 -34.20766 -33.79703 -31.90979 -31.39241 -30.95664 -29.42272 -28.39257 -26.64196 -25.57285 -23.98100 -23.15993 -21.74893 -20.86680 -20.67800 -19.38332 -18.03480 -17.79474 -17.69278 -16.90772 -16.44975 -16.32430 -15.91893 -15.79111 -15.45301 -15.29860 -15.09173 -14.55329 -14.25341 -14.20604 -13.89510 -13.50471 -13.29729 -12.93668 -12.84595 -12.65225 -12.63253 -12.57112 -12.09025 -11.95241 -11.86142 -11.80059 -11.71404 -11.47314 -11.19202 -11.13031 -10.92107 -10.44515 -10.37142 -10.27843 -10.01344 -9.87730 -9.57346 -9.30545 -8.54802 -8.20082 -8.03033 -6.47994 -3.89051 2.39358 2.46258 3.13206 3.22463 3.27670 3.45329 3.55921 3.82590 3.97898 4.03629 4.21974 4.39516 4.43155 4.53057 4.61672 4.70525 4.74703 4.83404 4.90706 4.92125 5.08032 5.12389 5.18750 5.23417 5.25186 5.28512 5.43001 5.47653 5.59217 5.62394 5.69210 5.72152 5.89611 5.93361 6.09754 6.18099 6.30272 6.35700 6.64518 7.08015 7.19756 7.49141 7.50046 7.98210 7.99460 8.54099 9.11363 9.47106 9.98156 10.69536 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.002154 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.599034 B =12994.460148 C =14884.978548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.049 0.951 4 C 0.120 3.880 5 N -0.730 5.730 6 C 0.517 3.483 7 O -0.518 6.518 8 C 0.038 3.962 9 O -0.347 6.347 10 C 0.053 3.947 11 H 0.082 0.918 12 C -0.153 4.153 13 C 0.047 3.953 14 O -0.373 6.373 15 C 0.023 3.977 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.438 3.562 19 O -0.583 6.583 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.277 1.277 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.400 0.600 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.347 0.653 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.327 -0.736 19.372 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.003 4.003 5 N -0.385 5.385 6 C 0.302 3.698 7 O -0.393 6.393 8 C -0.041 4.041 9 O -0.264 6.264 10 C -0.006 4.006 11 H 0.100 0.900 12 C -0.190 4.190 13 C -0.030 4.030 14 O -0.292 6.292 15 C -0.054 4.054 16 N -0.299 5.299 17 C -0.083 4.083 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.235 0.765 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.168 0.832 44 H 0.107 0.893 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.397 -1.940 20.141 21.221 hybrid contribution 1.247 1.026 -1.634 2.297 sum 7.644 -0.914 18.507 20.044 Atomic orbital electron populations 1.21740 0.93281 1.03040 1.01613 1.21818 0.97232 0.95909 0.88910 0.93266 1.21627 0.78694 1.02233 0.97765 1.45925 1.08339 1.60487 1.23735 1.20121 0.89010 0.78097 0.82562 1.90741 1.69835 1.45966 1.32752 1.22325 0.92719 0.98824 0.90277 1.88106 1.20169 1.77802 1.40371 1.23643 0.81799 0.95246 0.99905 0.90007 1.23228 0.99104 0.97054 0.99628 1.23567 0.96177 0.82665 1.00582 1.88909 1.78829 1.25463 1.35988 1.23765 0.96978 0.96811 0.87831 1.60114 1.34762 1.32322 1.02726 1.21761 1.01557 0.93753 0.91263 1.19793 0.85145 0.88213 0.84478 1.90532 1.55391 1.16078 1.84746 1.41870 1.57594 1.12436 1.07972 1.19698 1.40031 0.96438 0.86810 0.87908 1.25271 0.97609 0.95779 0.99268 1.69606 1.48540 1.08839 1.27210 0.85853 0.78906 0.78937 0.80566 1.20345 1.20918 1.19427 0.91462 0.92433 0.91922 0.90147 0.90658 0.76518 0.90066 0.89519 0.88777 0.89218 0.91818 0.88381 0.91616 0.88841 0.83223 0.89344 0.93848 0.77454 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.42 37.16 0.35 -1.09 16 2 C 0.07 0.79 2.81 -67.71 -0.19 0.60 16 3 H 0.05 0.49 7.80 -51.93 -0.40 0.09 16 4 C 0.12 1.31 5.31 -4.04 -0.02 1.28 16 5 N -0.73 -7.55 4.99 -60.30 -0.30 -7.85 16 6 C 0.52 6.27 7.91 -10.99 -0.09 6.18 16 7 O -0.52 -8.53 16.50 -14.35 -0.24 -8.77 16 8 C 0.04 0.35 6.28 36.01 0.23 0.57 16 9 O -0.35 -3.87 9.49 -55.14 -0.52 -4.39 16 10 C 0.05 0.43 3.50 -25.20 -0.09 0.34 16 11 H 0.08 0.50 7.86 -51.93 -0.41 0.09 16 12 C -0.15 -1.12 6.90 -24.73 -0.17 -1.29 16 13 C 0.05 0.32 7.72 38.21 0.29 0.61 16 14 O -0.37 -3.74 11.52 -35.23 -0.41 -4.14 16 15 C 0.02 0.19 7.52 37.74 0.28 0.48 16 16 N -0.66 -9.73 5.93 -107.99 -0.64 -10.37 16 17 C 0.05 0.79 5.96 -4.98 -0.03 0.76 16 18 C 0.44 9.83 7.82 -10.98 -0.09 9.74 16 19 O -0.58 -15.21 15.78 5.55 0.09 -15.13 16 20 N -0.56 -13.68 5.29 -10.96 -0.06 -13.74 16 21 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -23.86 13.05 55.50 0.72 -23.13 16 25 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.40 3.48 7.37 -40.82 -0.30 3.18 16 35 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16 37 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.82 7.97 -51.93 -0.41 0.40 16 43 H 0.35 5.15 6.41 -39.30 -0.25 4.90 16 44 H 0.09 1.34 7.44 -51.93 -0.39 0.95 16 45 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 46 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 47 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -34.90 392.94 -7.66 -42.56 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -7.45 Total: 13.10 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 0.24 Total: 10.41 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.27 Total: -55.09 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.08 Total: -32.43 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.90 -7.66 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491454983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.686 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds