Wall clock time and date at job start Tue Mar 31 2020 04:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46588 * 2 1 4 4 C 1.52997 * 109.46863 * 119.99708 * 2 1 3 5 5 N 1.46501 * 109.47126 * 174.99868 * 4 2 1 6 6 C 1.34772 * 120.00238 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00189 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00003 * 180.02562 * 6 5 4 9 9 O 1.42896 * 109.47531 * 179.97438 * 8 6 5 10 10 C 1.42898 * 114.00569 * 179.97438 * 9 8 6 11 11 H 1.09000 * 110.54079 * 328.84157 * 10 9 8 12 12 C 1.54807 * 110.49229 * 206.22403 * 10 9 8 13 13 C 1.54994 * 102.09494 * 220.44749 * 12 10 9 14 14 O 1.44380 * 103.49110 * 37.01885 * 13 12 10 15 15 C 1.43739 * 106.97820 * 319.94499 * 14 13 12 16 16 N 1.46897 * 109.47140 * 239.99828 * 2 1 3 17 17 C 1.46901 * 110.99806 * 84.99789 * 16 2 1 18 18 C 1.50700 * 109.47112 * 179.97438 * 17 16 2 19 19 O 1.21293 * 120.00127 * 0.02562 * 18 17 16 20 20 N 1.34783 * 120.00040 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99843 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99880 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99723 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00174 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99726 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47555 * 90.00152 * 25 23 21 27 27 H 1.48504 * 109.47088 * 209.99770 * 25 23 21 28 28 H 1.48504 * 109.47405 * 329.99921 * 25 23 21 29 29 H 1.08998 * 109.46588 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47054 * 299.99803 * 1 2 3 31 31 H 1.08999 * 109.46899 * 60.00006 * 1 2 3 32 32 H 1.09005 * 109.46812 * 55.00400 * 4 2 1 33 33 H 1.08993 * 109.47591 * 294.99906 * 4 2 1 34 34 H 0.97003 * 119.99793 * 0.02562 * 5 4 2 35 35 H 1.09008 * 109.47577 * 59.99847 * 8 6 5 36 36 H 1.09000 * 109.47184 * 300.00020 * 8 6 5 37 37 H 1.09005 * 110.90346 * 338.64483 * 12 10 9 38 38 H 1.09000 * 110.90998 * 102.24219 * 12 10 9 39 39 H 1.08998 * 110.61564 * 278.52047 * 13 12 10 40 40 H 1.08997 * 110.62119 * 155.52521 * 13 12 10 41 41 H 1.09004 * 109.87903 * 267.08704 * 15 14 13 42 42 H 1.08997 * 110.00609 * 146.00467 * 15 14 13 43 43 H 1.00892 * 111.00074 * 208.95144 * 16 2 1 44 44 H 1.09000 * 109.47603 * 300.00308 * 17 16 2 45 45 H 1.09005 * 109.47102 * 60.00127 * 17 16 2 46 46 H 0.97003 * 119.99613 * 359.97438 * 20 18 17 47 47 H 0.97001 * 120.00380 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.1730 -1.4291 2.1908 7 8 3.5699 -1.8849 3.1391 8 6 5.6749 -1.5368 2.1307 9 8 6.1513 -2.2104 3.2974 10 6 7.5712 -2.3663 3.3396 11 1 7.9755 -2.4630 2.3320 12 6 7.9561 -3.5957 4.1981 13 6 9.1918 -3.0750 4.9753 14 8 8.8616 -1.6963 5.2485 15 6 8.2228 -1.1763 4.0705 16 7 2.0197 -0.6925 -1.1994 17 6 2.0825 0.2226 -2.3469 18 6 2.5885 -0.5215 -3.5557 19 8 2.8689 -1.6985 -3.4699 20 7 2.7296 0.1208 -4.7322 21 6 3.1895 -0.5563 -5.8320 22 1 3.4391 -1.6043 -5.7556 23 6 3.3344 0.1058 -7.0450 24 7 3.0312 1.3811 -7.1378 25 14 3.9603 -0.8169 -8.5437 26 1 2.8111 -1.3990 -9.2823 27 1 4.6952 0.1203 -9.4308 28 1 4.8723 -1.9056 -8.1096 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 3.9825 -0.4622 0.4320 35 1 6.1094 -0.5380 2.0854 36 1 5.9637 -2.0991 1.2427 37 1 7.1496 -3.8604 4.8820 38 1 8.2225 -4.4432 3.5665 39 1 10.0883 -3.1400 4.3588 40 1 9.3227 -3.6297 5.9044 41 1 8.9637 -0.7053 3.4244 42 1 7.4596 -0.4500 4.3498 43 1 2.9173 -1.1204 -1.0287 44 1 1.0871 0.6163 -2.5525 45 1 2.7589 1.0462 -2.1182 46 1 2.5050 1.0620 -4.8008 47 1 3.1320 1.8432 -7.9847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491454983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:23 Heat of formation + Delta-G solvation = -185.846304 kcal Electronic energy + Delta-G solvation = -27639.810668 eV Core-core repulsion = 23435.756643 eV Total energy + Delta-G solvation = -4204.054024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.14329 -40.49504 -40.11602 -38.41799 -37.78231 -35.97109 -35.01711 -33.27277 -32.56912 -32.09132 -30.05100 -29.12830 -28.11769 -26.61125 -25.56708 -23.72757 -22.35232 -21.79098 -21.59973 -21.10450 -19.91535 -18.67369 -18.47060 -17.78537 -17.48799 -17.20826 -16.97765 -16.73317 -16.61366 -16.37558 -16.22339 -15.84083 -15.66604 -15.32060 -14.99349 -14.89437 -14.29327 -13.93468 -13.75071 -13.63430 -13.53750 -13.47580 -13.27569 -13.20412 -12.93199 -12.80579 -12.75677 -12.57433 -12.41446 -12.40003 -12.11477 -11.88864 -11.74441 -11.49771 -11.00333 -10.97909 -10.51544 -10.33254 -10.22573 -10.00320 -9.36528 -8.45901 -5.94164 1.38548 1.43113 1.48019 1.54956 1.69396 2.06564 2.29338 2.77160 2.89274 2.97232 3.21921 3.45167 3.49596 3.64068 3.73591 3.84939 4.00116 4.13463 4.16585 4.19017 4.23027 4.27343 4.35633 4.39594 4.46877 4.53241 4.61161 4.62899 4.70735 4.78864 4.80985 4.87928 4.93423 5.01981 5.05190 5.24157 5.42106 5.44788 5.77989 5.88746 6.01189 6.09776 6.36414 6.38584 6.61235 7.09813 7.13995 7.57956 8.13111 8.71209 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.002154 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.599034 B =12994.460148 C =14884.978548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.080 3.920 3 H 0.072 0.928 4 C 0.124 3.876 5 N -0.719 5.719 6 C 0.513 3.487 7 O -0.571 6.571 8 C 0.039 3.961 9 O -0.379 6.379 10 C 0.048 3.952 11 H 0.108 0.892 12 C -0.154 4.154 13 C 0.045 3.955 14 O -0.403 6.403 15 C 0.022 3.978 16 N -0.681 5.681 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.410 0.590 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.344 0.656 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.231 0.285 18.908 20.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 H 0.090 0.910 4 C 0.000 4.000 5 N -0.374 5.374 6 C 0.299 3.701 7 O -0.449 6.449 8 C -0.040 4.040 9 O -0.298 6.298 10 C -0.010 4.010 11 H 0.125 0.875 12 C -0.192 4.192 13 C -0.031 4.031 14 O -0.323 6.323 15 C -0.055 4.055 16 N -0.317 5.317 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.461 4.461 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.247 0.753 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.165 0.835 44 H 0.122 0.878 45 H 0.093 0.907 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.298 -0.878 19.661 20.990 hybrid contribution 0.939 0.688 -1.431 1.844 sum 8.237 -0.190 18.230 20.006 Atomic orbital electron populations 1.21760 0.92763 1.02491 1.02663 1.21844 0.97491 0.96528 0.87098 0.90997 1.21558 0.78982 1.01315 0.98142 1.45864 1.08216 1.59705 1.23615 1.20751 0.90407 0.77049 0.81856 1.90715 1.71088 1.48306 1.34787 1.22457 0.90395 1.00728 0.90429 1.88073 1.21969 1.78288 1.41439 1.23854 0.80471 0.95342 1.01297 0.87469 1.23263 0.98674 0.97655 0.99566 1.23748 0.96571 0.81336 1.01418 1.88867 1.79149 1.27041 1.37232 1.23842 0.97255 0.96743 0.87699 1.60099 1.34868 1.32994 1.03710 1.21619 1.02634 0.93688 0.88843 1.20899 0.83200 0.87969 0.85467 1.90504 1.56674 1.18208 1.85619 1.41932 1.58224 1.12607 1.08205 1.19637 1.41998 0.95904 0.88596 0.90354 1.26001 0.97333 0.96601 1.01314 1.69661 1.48662 1.09602 1.28074 0.84961 0.78385 0.77870 0.77340 1.19935 1.19595 1.19699 0.92868 0.90084 0.92154 0.92133 0.89727 0.75284 0.87048 0.87500 0.90969 0.87333 0.89759 0.87567 0.89480 0.90032 0.83544 0.87812 0.90701 0.76922 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.42 71.98 0.68 -1.92 16 2 C 0.08 1.57 2.81 44.92 0.13 1.70 16 3 H 0.07 1.16 7.80 -2.39 -0.02 1.14 16 4 C 0.12 2.54 5.31 86.38 0.46 3.00 16 5 N -0.72 -13.92 4.99 -463.07 -2.31 -16.23 16 6 C 0.51 12.13 7.91 87.66 0.69 12.82 16 7 O -0.57 -19.16 16.50 16.01 0.26 -18.89 16 8 C 0.04 0.65 6.28 71.24 0.45 1.10 16 9 O -0.38 -8.25 9.49 -129.94 -1.23 -9.48 16 10 C 0.05 0.72 3.50 31.59 0.11 0.83 16 11 H 0.11 1.01 7.86 -2.39 -0.02 0.99 16 12 C -0.15 -2.13 6.90 31.89 0.22 -1.91 16 13 C 0.05 0.56 7.72 72.66 0.56 1.13 16 14 O -0.40 -7.83 11.52 -148.98 -1.72 -9.55 16 15 C 0.02 0.33 7.52 72.36 0.54 0.88 16 16 N -0.68 -18.82 5.93 -495.57 -2.94 -21.76 16 17 C 0.06 1.94 5.96 85.56 0.51 2.45 16 18 C 0.44 19.40 7.82 87.66 0.69 20.09 16 19 O -0.62 -32.83 15.78 -3.07 -0.05 -32.88 16 20 N -0.57 -27.82 5.29 -306.97 -1.62 -29.45 16 21 C -0.33 -18.16 9.68 84.04 0.81 -17.35 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 24 N -0.92 -47.98 13.05 21.66 0.28 -47.70 16 25 Si 0.99 41.68 29.55 68.60 2.03 43.71 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.17 7.45 -2.39 -0.02 1.15 16 32 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.41 6.28 7.37 -92.71 -0.68 5.59 16 35 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.11 1.33 8.11 -2.39 -0.02 1.31 16 37 H 0.07 1.31 8.09 -2.38 -0.02 1.29 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 40 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 1.40 7.97 -2.39 -0.02 1.38 16 43 H 0.34 9.76 6.41 -89.70 -0.58 9.19 16 44 H 0.10 2.87 7.44 -2.39 -0.02 2.85 16 45 H 0.08 1.83 8.06 -2.38 -0.02 1.81 16 46 H 0.40 18.23 7.90 -92.71 -0.73 17.50 16 47 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -77.39 392.94 -1.96 -79.35 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -0.99 Total: 40.28 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 6.32 Total: 22.61 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -6.59 Total: -115.14 kcal Atomic # 8 Polarization: -68.08 SS G_CDS: -2.73 Total: -70.81 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -77.39 -1.96 -79.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491454983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.493 kcal (2) G-P(sol) polarization free energy of solvation -77.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds