Wall clock time and date at job start Tue Mar 31 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34954 * 125.63714 * 2 1 4 4 C 1.35488 * 108.99034 * 180.02562 * 3 2 1 5 5 S 1.76193 * 126.08337 * 180.02562 * 4 3 2 6 6 O 1.42101 * 106.40475 * 203.53607 * 5 4 3 7 7 O 1.42107 * 106.40113 * 336.46086 * 5 4 3 8 8 N 1.65600 * 107.21991 * 89.99808 * 5 4 3 9 9 C 1.47068 * 136.05557 * 269.63246 * 8 5 4 10 10 C 1.53241 * 88.08449 * 207.20089 * 9 8 5 11 11 O 1.42895 * 114.01755 * 87.71312 * 10 9 8 12 12 C 1.50700 * 114.50682 * 220.45865 * 10 9 8 13 13 H 1.08001 * 119.99946 * 99.19794 * 12 10 9 14 14 C 1.37869 * 120.00081 * 279.19706 * 12 10 9 15 15 N 1.31518 * 120.00212 * 7.47048 * 14 12 10 16 16 Si 1.86799 * 120.00145 * 187.46597 * 14 12 10 17 17 H 1.48503 * 109.46761 * 84.99566 * 16 14 12 18 18 H 1.48500 * 109.47116 * 204.99296 * 16 14 12 19 19 H 1.48497 * 109.47260 * 324.99710 * 16 14 12 20 20 C 1.47068 * 136.05841 * 89.99792 * 8 5 4 21 21 C 1.39809 * 107.83992 * 359.73676 * 4 3 2 22 22 C 1.37702 * 125.63603 * 180.02562 * 2 1 3 23 23 C 1.46493 * 126.26054 * 359.97438 * 22 2 1 24 24 O 1.21627 * 119.99710 * 179.72372 * 23 22 2 25 25 O 1.34889 * 120.00457 * 359.97438 * 23 22 2 26 26 H 1.08994 * 109.47178 * 269.98136 * 1 2 3 27 27 H 1.09001 * 109.47002 * 29.98547 * 1 2 3 28 28 H 1.09003 * 109.46944 * 149.98417 * 1 2 3 29 29 H 1.08004 * 125.50573 * 359.97285 * 3 2 1 30 30 H 1.08999 * 113.47168 * 321.93271 * 9 8 5 31 31 H 1.09003 * 113.46930 * 92.37120 * 9 8 5 32 32 H 0.96704 * 113.99822 * 80.59791 * 11 10 9 33 33 H 0.96998 * 120.00733 * 180.02562 * 15 14 12 34 34 H 1.08999 * 113.46905 * 267.62962 * 20 8 5 35 35 H 1.08990 * 113.46610 * 38.01305 * 20 8 5 36 36 H 1.07992 * 126.51440 * 180.30416 * 21 4 3 37 37 H 0.96696 * 117.00487 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0968 0.0000 4 6 3.5494 0.7087 -0.0006 5 16 4.9515 1.7756 -0.0002 6 8 6.0276 1.0245 -0.5453 7 8 4.5138 3.0136 -0.5437 8 7 5.3420 2.0715 1.5817 9 6 4.9786 3.0766 2.5920 10 6 6.3381 2.8278 3.2539 11 8 7.3962 3.6326 2.7297 12 6 6.3036 2.7966 4.7602 13 1 6.2830 1.8503 5.2803 14 6 6.2983 3.9759 5.4742 15 7 6.1751 5.1246 4.8458 16 14 6.4661 3.9423 7.3344 17 1 7.9043 3.8926 7.7008 18 1 5.8509 5.1657 7.9090 19 1 5.7764 2.7421 7.8720 20 6 6.2096 1.4485 2.5926 21 6 3.5785 -0.6891 0.0052 22 6 2.2673 -1.1191 -0.0005 23 6 1.8121 -2.5116 -0.0006 24 8 2.6243 -3.4168 -0.0061 25 8 0.4922 -2.7897 0.0004 26 1 -0.3633 -0.0003 1.0276 27 1 -0.3633 0.8901 -0.5136 28 1 -0.3633 -0.8899 -0.5141 29 1 1.9022 2.1189 -0.0004 30 1 4.8730 4.0824 2.1853 31 1 4.1328 2.7817 3.2131 32 1 7.4195 4.5317 3.0850 33 1 6.1718 5.9545 5.3480 34 1 5.6952 0.7154 3.2139 35 1 7.1482 1.0719 2.1863 36 1 4.4596 -1.3134 0.0109 37 1 0.2402 -3.7233 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600967593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:35 Heat of formation + Delta-G solvation = -118.269564 kcal Electronic energy + Delta-G solvation = -26332.682619 eV Core-core repulsion = 22204.926962 eV Total energy + Delta-G solvation = -4127.755657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.83220 -39.90904 -38.60904 -36.63171 -36.47689 -35.29955 -33.89484 -33.36623 -32.21746 -30.11922 -27.79257 -27.11270 -25.02944 -24.66296 -24.38444 -21.68596 -20.34108 -19.69268 -19.06535 -17.94817 -17.70291 -17.39846 -16.55161 -16.29710 -15.93424 -15.49788 -15.37462 -15.21932 -14.93606 -14.26307 -14.19455 -13.72358 -13.65818 -13.18125 -13.01511 -12.90362 -12.78397 -12.59125 -12.10957 -11.94184 -11.64240 -11.58904 -11.52944 -11.47419 -11.20285 -10.98623 -10.92013 -10.77549 -10.46164 -10.22843 -9.48503 -9.14249 -8.81675 -8.79177 -8.50902 -8.00887 -6.32571 -4.41324 0.89052 0.90626 1.85417 2.29062 2.68423 2.75147 3.19348 3.27040 3.28903 3.63341 4.23204 4.27674 4.36043 4.48994 4.63836 4.74886 4.83628 4.91851 5.09294 5.18298 5.46153 5.50545 5.60472 6.03103 6.09241 6.11807 6.20138 6.37943 6.45003 6.46038 6.68644 6.77922 6.86589 7.04476 7.51713 7.55760 7.69093 7.93073 8.61428 9.28769 9.39321 10.74329 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.015605 B = 0.003566 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.903182 B = 7850.174574 C = 8511.353531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.412 5.412 3 C 0.154 3.846 4 C -0.758 4.758 5 S 2.734 3.266 6 O -0.962 6.962 7 O -0.965 6.965 8 N -1.032 6.032 9 C 0.107 3.893 10 C 0.242 3.758 11 O -0.567 6.567 12 C -0.535 4.535 13 H 0.071 0.929 14 C 0.074 3.926 15 N -0.892 5.892 16 Si 0.903 3.097 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.132 3.868 21 C 0.002 3.998 22 C -0.065 4.065 23 C 0.559 3.441 24 O -0.502 6.502 25 O -0.520 6.520 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.192 0.808 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.387 0.613 33 H 0.271 0.729 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.167 0.833 37 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.343 -9.249 -7.108 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.085 5.085 3 C 0.010 3.990 4 C -0.848 4.848 5 S 2.824 3.176 6 O -0.953 6.953 7 O -0.956 6.956 8 N -0.873 5.873 9 C -0.019 4.019 10 C 0.198 3.802 11 O -0.376 6.376 12 C -0.574 4.574 13 H 0.090 0.910 14 C -0.130 4.130 15 N -0.531 5.531 16 Si 0.731 3.269 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.198 1.198 20 C 0.007 3.993 21 C -0.024 4.024 22 C -0.173 4.173 23 C 0.404 3.596 24 O -0.390 6.390 25 O -0.334 6.334 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.121 0.879 29 H 0.209 0.791 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.239 0.761 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.184 0.816 37 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -13.992 -9.303 -8.429 18.798 hybrid contribution -1.163 -0.517 1.552 2.007 sum -15.155 -9.820 -6.877 19.324 Atomic orbital electron populations 1.22438 0.75325 1.05648 1.04686 1.44243 1.07375 1.05416 1.51439 1.21846 0.88761 0.92355 0.96006 1.31791 1.16310 1.09566 1.27170 1.00651 0.72587 0.72616 0.71717 1.93526 1.51868 1.73408 1.76454 1.93524 1.83346 1.42151 1.76547 1.60015 1.58437 1.42086 1.26733 1.23568 1.02162 0.90226 0.85920 1.19551 0.83448 0.86635 0.90535 1.86075 1.52050 1.29353 1.70144 1.21415 1.52385 0.93502 0.90117 0.91046 1.25061 0.93203 0.95269 0.99449 1.69672 1.48759 0.97940 1.36708 0.86431 0.78650 0.77600 0.84265 1.20201 1.21161 1.19763 1.22820 0.92137 0.97831 0.86483 1.21030 0.94910 0.92346 0.94075 1.19406 0.90756 0.83951 1.23164 1.19328 0.80032 0.87641 0.72607 1.90988 1.54903 1.46389 1.46739 1.84590 1.26259 1.36049 1.86484 0.89704 0.88957 0.87897 0.79140 0.91224 0.90695 0.76104 0.91893 0.89971 0.91117 0.81558 0.72524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.56 59.85 0.63 1.01 16 2 N -0.41 -4.50 3.15 -120.41 -0.38 -4.87 16 3 C 0.15 1.91 11.09 -17.16 -0.19 1.72 16 4 C -0.76 -11.54 6.17 -39.98 -0.25 -11.79 16 5 S 2.73 50.81 6.42 -107.50 -0.69 50.12 16 6 O -0.96 -20.17 17.87 -57.17 -1.02 -21.20 16 7 O -0.96 -19.58 17.85 -57.17 -1.02 -20.60 16 8 N -1.03 -20.56 4.24 -125.30 -0.53 -21.09 16 9 C 0.11 2.28 8.14 -8.63 -0.07 2.21 16 10 C 0.24 5.71 1.40 -91.39 -0.13 5.58 16 11 O -0.57 -14.35 13.50 -35.23 -0.48 -14.82 16 12 C -0.54 -13.18 8.67 -34.44 -0.30 -13.47 16 13 H 0.07 1.70 7.82 -52.49 -0.41 1.29 16 14 C 0.07 1.81 5.33 -17.82 -0.10 1.72 16 15 N -0.89 -22.46 11.64 55.43 0.65 -21.82 16 16 Si 0.90 19.28 29.54 -169.99 -5.02 14.25 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 18 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 C 0.13 2.71 8.15 -8.50 -0.07 2.64 16 21 C 0.00 0.03 10.46 -39.08 -0.41 -0.38 16 22 C -0.07 -0.85 6.89 -81.99 -0.56 -1.41 16 23 C 0.56 6.55 8.29 34.06 0.28 6.83 16 24 O -0.50 -7.33 17.67 -19.36 -0.34 -7.67 16 25 O -0.52 -3.74 10.86 -41.01 -0.45 -4.19 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.58 6.15 -51.93 -0.32 0.26 16 29 H 0.19 1.83 8.06 -52.48 -0.42 1.40 16 30 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.07 1.50 8.10 -51.93 -0.42 1.07 16 32 H 0.39 9.79 7.10 45.56 0.32 10.12 16 33 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.17 2.41 8.06 -52.49 -0.42 1.98 16 37 H 0.42 1.13 9.11 45.56 0.42 1.54 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -33.83 342.59 -7.78 -41.61 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -2.50 Total: 10.46 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -1.16 Total: -5.34 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.26 Total: -47.78 kcal Atomic # 8 Polarization: -65.18 SS G_CDS: -3.31 Total: -68.48 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.25 kcal Atomic # 16 Polarization: 50.81 SS G_CDS: -0.69 Total: 50.12 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.83 -7.78 -41.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600967593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.662 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds