Wall clock time and date at job start Tue Mar 31 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 S 1.65595 * 120.59520 * 124.62118 * 12 11 10 14 14 O 1.42096 * 106.40499 * 23.56597 * 13 12 11 15 15 O 1.42102 * 106.40174 * 156.48574 * 13 12 11 16 16 C 1.76198 * 107.22276 * 270.02260 * 13 12 11 17 17 C 1.34156 * 125.42737 * 89.99729 * 16 13 12 18 18 C 1.47055 * 105.95198 * 179.97438 * 17 16 13 19 19 C 1.47228 * 127.20276 * 179.97438 * 18 17 16 20 20 O 1.21538 * 120.00072 * 359.97438 * 19 18 17 21 21 O 1.34772 * 120.00460 * 180.02562 * 19 18 17 22 22 C 1.36500 * 105.59578 * 0.02562 * 18 17 16 23 23 O 1.33626 * 108.38162 * 359.75925 * 22 18 17 24 24 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 25 25 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 26 26 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 28 28 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 29 29 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 30 30 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 31 31 H 1.08006 * 127.02558 * 0.02562 * 17 16 13 32 32 H 0.96693 * 117.00692 * 180.02562 * 21 19 18 33 33 H 1.08002 * 125.80539 * 180.02562 * 22 18 17 34 34 H 1.08996 * 109.61476 * 295.47839 * 24 12 11 35 35 H 1.09010 * 109.61052 * 174.96625 * 24 12 11 36 36 H 1.09003 * 109.61422 * 354.94072 * 25 9 7 37 37 H 1.08999 * 109.61487 * 115.28316 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 16 0.1997 -5.9805 2.3222 14 8 1.1324 -7.0321 2.1137 15 8 -0.4245 -5.7323 3.5744 16 6 -1.1002 -6.2306 1.1593 17 6 -0.9930 -6.9094 0.0072 18 6 -2.3214 -6.8518 -0.6210 19 6 -2.7251 -7.4467 -1.9058 20 8 -1.9170 -8.0665 -2.5691 21 8 -3.9905 -7.3032 -2.3469 22 6 -3.1015 -6.1303 0.2358 23 8 -2.3567 -5.7766 1.2874 24 6 0.5344 -3.2876 2.4474 25 6 0.2343 -2.3368 1.2819 26 1 -0.4850 0.8401 -0.0004 27 1 1.0134 -4.0707 -0.8208 28 1 2.7052 -3.5085 -0.8012 29 1 3.0125 -4.2759 1.4845 30 1 2.2517 -5.6159 0.5906 31 1 -0.1114 -7.3990 -0.3797 32 1 -4.2086 -7.7117 -3.1957 33 1 -4.1444 -5.8903 0.0907 34 1 1.3246 -2.8665 3.0689 35 1 -0.3666 -3.4306 3.0440 36 1 0.0946 -1.3248 1.6621 37 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074810.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:27 Heat of formation + Delta-G solvation = -105.511587 kcal Electronic energy + Delta-G solvation = -26902.699517 eV Core-core repulsion = 22775.497087 eV Total energy + Delta-G solvation = -4127.202430 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.89132 -40.10590 -37.72071 -37.33717 -36.32618 -35.91547 -33.92810 -33.35250 -31.18418 -30.64160 -30.26776 -26.51013 -25.04916 -23.39002 -22.99011 -22.58713 -21.36294 -20.20180 -19.39392 -18.46398 -18.03351 -17.70197 -16.63916 -16.49359 -16.16262 -15.99561 -15.69469 -15.60404 -14.86149 -14.26524 -13.98120 -13.80006 -13.71699 -13.54427 -13.48253 -13.08489 -12.98429 -12.33571 -12.21842 -12.15656 -11.90012 -11.68557 -11.53696 -11.20025 -11.01615 -10.87185 -10.80660 -10.53113 -10.34938 -10.30840 -10.03219 -9.86211 -9.52000 -8.92964 -8.54986 -6.76898 -5.89347 -3.33888 0.21050 0.78388 1.15155 2.36803 2.72626 2.78976 3.08391 3.33125 3.39506 3.40619 3.65722 4.22669 4.34369 4.41134 4.46062 4.99215 5.01072 5.20277 5.26769 5.36866 5.41918 5.66571 5.70591 5.81602 5.95069 6.14391 6.17428 6.26803 6.31187 6.38854 6.50162 6.71620 6.78868 7.16847 7.47541 7.59976 7.69569 8.32448 9.08535 9.71106 10.27819 11.18497 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.012892 B = 0.004320 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.439836 B = 6479.698136 C = 7584.400044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.129 3.871 11 C 0.100 3.900 12 N -0.974 5.974 13 S 2.710 3.290 14 O -0.939 6.939 15 O -0.940 6.940 16 C -0.565 4.565 17 C -0.034 4.034 18 C -0.252 4.252 19 C 0.560 3.440 20 O -0.509 6.509 21 O -0.514 6.514 22 C 0.101 3.899 23 O -0.111 6.111 24 C 0.093 3.907 25 C 0.156 3.844 26 H 0.256 0.744 27 H 0.022 0.978 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.180 0.820 32 H 0.418 0.582 33 H 0.231 0.769 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 -12.629 0.617 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.001 3.999 11 C -0.027 4.027 12 N -0.815 5.815 13 S 2.791 3.209 14 O -0.929 6.929 15 O -0.930 6.930 16 C -0.691 4.691 17 C -0.054 4.054 18 C -0.255 4.255 19 C 0.404 3.596 20 O -0.398 6.398 21 O -0.326 6.326 22 C 0.026 3.974 23 O -0.003 6.003 24 C -0.033 4.033 25 C 0.028 3.972 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.197 0.803 32 H 0.277 0.723 33 H 0.248 0.752 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.112 -12.836 1.715 14.320 hybrid contribution -0.282 0.639 -1.669 1.810 sum -6.394 -12.196 0.046 13.771 Atomic orbital electron populations 1.70004 1.05322 1.25870 1.53483 1.25064 0.95289 0.98553 1.00538 0.86334 0.78903 0.83100 0.78197 1.20884 1.21637 1.20895 1.19162 0.92759 0.84638 1.42024 0.91464 1.43911 1.36492 1.01547 1.49087 1.21387 0.98501 0.87511 0.92469 1.22261 0.87771 1.00664 0.91991 1.57477 1.42279 1.22045 1.59712 1.02107 0.72357 0.73235 0.73171 1.93627 1.58655 1.54550 1.86097 1.93583 1.77037 1.84947 1.37442 1.36306 0.99802 1.14088 1.18857 1.22838 0.97224 0.94472 0.90913 1.20576 0.95730 1.11854 0.97388 1.19493 0.79526 0.76417 0.84120 1.90929 1.52473 1.39437 1.56977 1.84522 1.30591 1.74058 1.43476 1.25294 0.97633 0.90668 0.83836 1.83995 1.18037 1.59095 1.39137 1.22473 0.99845 0.82660 0.98325 1.21200 0.89087 0.98810 0.88063 0.93416 0.96004 0.91273 0.90393 0.90155 0.80300 0.72261 0.75243 0.90686 0.90034 0.88036 0.95940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.81 11.20 55.49 0.62 -24.19 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 3 Si 0.91 20.72 29.59 -169.99 -5.03 15.69 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.59 9.57 -15.06 -0.14 -6.73 16 8 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 9 N -0.59 -13.63 2.96 -171.77 -0.51 -14.14 16 10 C 0.13 2.47 6.70 -3.37 -0.02 2.44 16 11 C 0.10 1.58 6.57 -3.37 -0.02 1.56 16 12 N -0.97 -15.91 3.26 -113.00 -0.37 -16.28 16 13 S 2.71 41.78 5.84 -107.50 -0.63 41.15 16 14 O -0.94 -15.18 16.50 -57.17 -0.94 -16.13 16 15 O -0.94 -16.28 16.71 -57.29 -0.96 -17.24 16 16 C -0.56 -8.24 7.32 29.29 0.21 -8.03 16 17 C -0.03 -0.47 10.70 -37.45 -0.40 -0.87 16 18 C -0.25 -3.23 6.31 -103.30 -0.65 -3.88 16 19 C 0.56 6.81 8.33 34.38 0.29 7.10 16 20 O -0.51 -7.67 17.77 -19.30 -0.34 -8.02 16 21 O -0.51 -4.23 13.28 -40.69 -0.54 -4.77 16 22 C 0.10 1.11 11.94 30.11 0.36 1.47 16 23 O -0.11 -1.54 10.52 7.72 0.08 -1.45 16 24 C 0.09 1.64 6.55 -3.60 -0.02 1.62 16 25 C 0.16 3.41 5.51 -3.59 -0.02 3.39 16 26 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.08 7.09 -51.93 -0.37 0.72 16 31 H 0.18 2.24 8.06 -52.48 -0.42 1.82 16 32 H 0.42 1.54 9.11 45.56 0.42 1.96 16 33 H 0.23 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.32 7.09 -51.92 -0.37 0.95 16 36 H 0.10 2.48 6.00 -51.93 -0.31 2.17 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -34.39 335.46 -7.20 -41.60 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -3.13 Total: 0.61 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.51 Total: -1.89 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.26 Total: -54.61 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -2.70 Total: -47.60 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Atomic # 16 Polarization: 41.78 SS G_CDS: -0.63 Total: 41.15 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.39 -7.20 -41.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074810.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.916 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds