Wall clock time and date at job start Tue Mar 31 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00083 * 2 1 4 4 H 1.48503 * 109.46868 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46923 * 299.99647 * 3 2 1 6 6 H 1.48501 * 109.47263 * 59.99831 * 3 2 1 7 7 C 1.38816 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00286 * 197.57050 * 7 2 1 9 9 N 1.36936 * 119.99596 * 17.57369 * 7 2 1 10 10 C 1.46962 * 120.59847 * 208.15229 * 9 7 2 11 11 C 1.53373 * 108.63739 * 235.25088 * 10 9 7 12 12 N 1.46958 * 108.63385 * 310.57447 * 11 10 9 13 13 S 1.65600 * 120.59109 * 235.20417 * 12 11 10 14 14 O 1.42098 * 106.40555 * 336.45625 * 13 12 11 15 15 O 1.42103 * 106.40158 * 203.53596 * 13 12 11 16 16 C 1.76197 * 107.21962 * 89.99753 * 13 12 11 17 17 O 1.33627 * 125.80678 * 359.97438 * 16 13 12 18 18 C 1.34220 * 110.92065 * 180.02562 * 17 16 13 19 19 C 1.34154 * 109.15132 * 359.97438 * 18 17 16 20 20 C 1.36500 * 125.80982 * 180.02562 * 16 13 12 21 21 C 1.47231 * 127.19819 * 359.94087 * 20 16 13 22 22 O 1.21535 * 120.00398 * 0.02562 * 21 20 16 23 23 O 1.34777 * 120.00081 * 179.97438 * 21 20 16 24 24 C 1.46965 * 118.81607 * 55.47336 * 12 11 10 25 25 C 1.46972 * 120.59444 * 28.17343 * 9 7 2 26 26 H 0.97004 * 120.00126 * 0.02562 * 1 2 3 27 27 H 1.08991 * 109.61546 * 115.50277 * 10 9 7 28 28 H 1.09006 * 109.74527 * 355.07518 * 10 9 7 29 29 H 1.08998 * 109.61048 * 190.82587 * 11 10 9 30 30 H 1.09003 * 109.74840 * 70.39988 * 11 10 9 31 31 H 1.08010 * 125.42502 * 179.73312 * 18 17 16 32 32 H 1.08001 * 127.03064 * 179.97438 * 19 18 17 33 33 H 0.96696 * 117.00427 * 180.02562 * 23 21 20 34 34 H 1.09005 * 109.60729 * 64.26922 * 24 12 11 35 35 H 1.08998 * 109.61105 * 184.77851 * 24 12 11 36 36 H 1.08993 * 109.61354 * 244.49260 * 25 9 7 37 37 H 1.09003 * 109.60924 * 5.01140 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0524 -1.2239 0.2829 9 7 1.3734 -2.3605 -0.3570 10 6 1.8128 -3.6538 0.1853 11 6 2.1172 -4.5979 -0.9845 12 7 0.9824 -4.5701 -1.9179 13 16 0.2130 -5.9710 -2.3511 14 8 1.1473 -7.0219 -2.1462 15 8 -0.4083 -5.7168 -3.6036 16 6 -1.0894 -6.2304 -1.1932 17 8 -1.3882 -5.4353 -0.1615 18 6 -2.4355 -5.9162 0.5265 19 6 -2.8540 -7.0543 -0.0473 20 6 -1.9643 -7.2781 -1.1967 21 6 -2.0089 -8.3973 -2.1523 22 8 -1.2043 -8.4526 -3.0615 23 8 -2.9414 -9.3612 -2.0181 24 6 0.5464 -3.2774 -2.4645 25 6 0.2385 -2.3328 -1.2904 26 1 -0.4850 0.8401 -0.0004 27 1 1.0219 -4.0795 0.8026 28 1 2.7114 -3.5149 0.7866 29 1 2.2577 -5.6116 -0.6094 30 1 3.0210 -4.2691 -1.4976 31 1 -2.8696 -5.4614 1.4048 32 1 -3.6754 -7.6793 0.2706 33 1 -2.9309 -10.0759 -2.6694 34 1 1.3404 -2.8540 -3.0798 35 1 -0.3507 -3.4190 -3.0672 36 1 -0.6646 -2.6644 -0.7782 37 1 0.0981 -1.3190 -1.6655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:11 Heat of formation + Delta-G solvation = -99.665846 kcal Electronic energy + Delta-G solvation = -27435.123714 eV Core-core repulsion = 23308.174775 eV Total energy + Delta-G solvation = -4126.948939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.85352 -40.26168 -37.67660 -37.16487 -36.48129 -35.77247 -33.92255 -33.35712 -31.15164 -30.44835 -30.20905 -26.47837 -25.36039 -23.32953 -22.93911 -22.37473 -21.51728 -19.96570 -19.17202 -18.53349 -18.21263 -17.45124 -16.85029 -16.82786 -16.14305 -15.75644 -15.52849 -15.37735 -14.83279 -14.25345 -14.14048 -13.76330 -13.66320 -13.49303 -13.27418 -13.09817 -12.93108 -12.23440 -12.11082 -12.05162 -11.94224 -11.71307 -11.47355 -11.18734 -11.16131 -10.86490 -10.76682 -10.43336 -10.31913 -10.25806 -9.99488 -9.76872 -9.46071 -8.88972 -8.52918 -6.73573 -5.86996 -3.30512 0.30026 0.37044 1.62998 2.32568 2.55155 2.58367 3.29774 3.33235 3.42054 3.43736 3.70055 4.17968 4.43220 4.61843 4.64972 4.84688 5.05526 5.16099 5.29099 5.33138 5.46375 5.72089 5.84986 5.87599 6.01180 6.05772 6.22025 6.30664 6.37198 6.44756 6.56915 6.77096 6.84655 7.22275 7.47267 7.51519 7.72710 8.34867 9.11329 9.74257 10.31241 11.20828 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.003980 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.181905 B = 7033.695988 C = 7557.620369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.131 3.869 11 C 0.100 3.900 12 N -0.975 5.975 13 S 2.705 3.295 14 O -0.929 6.929 15 O -0.926 6.926 16 C -0.470 4.470 17 O -0.098 6.098 18 C 0.006 3.994 19 C -0.186 4.186 20 C -0.133 4.133 21 C 0.547 3.453 22 O -0.497 6.497 23 O -0.500 6.500 24 C 0.090 3.910 25 C 0.157 3.843 26 H 0.254 0.746 27 H 0.025 0.975 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.223 0.777 32 H 0.173 0.827 33 H 0.420 0.580 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.027 0.973 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.011 -14.368 -0.231 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.310 5.310 10 C 0.003 3.997 11 C -0.027 4.027 12 N -0.817 5.817 13 S 2.784 3.216 14 O -0.919 6.919 15 O -0.916 6.916 16 C -0.599 4.599 17 O 0.011 5.989 18 C -0.064 4.064 19 C -0.205 4.205 20 C -0.137 4.137 21 C 0.391 3.609 22 O -0.385 6.385 23 O -0.312 6.312 24 C -0.036 4.036 25 C 0.030 3.970 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.239 0.761 32 H 0.190 0.810 33 H 0.280 0.720 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.045 0.955 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.618 -14.202 -0.729 15.290 hybrid contribution -0.475 0.272 0.307 0.628 sum -6.093 -13.930 -0.422 15.210 Atomic orbital electron populations 1.70019 1.05294 1.25562 1.53734 1.25040 0.95275 0.98478 1.00715 0.86226 0.79425 0.83830 0.77275 1.20217 1.21505 1.21788 1.19247 0.92882 0.84693 1.41472 0.91401 1.43899 1.36611 1.01367 1.49139 1.21284 0.98500 0.87389 0.92527 1.22184 0.87744 1.00758 0.91974 1.57427 1.42822 1.21914 1.59524 1.02512 0.72722 0.73137 0.73243 1.93612 1.57992 1.54415 1.85866 1.93621 1.77452 1.84838 1.35704 1.37167 1.19138 0.98015 1.05544 1.84138 1.40704 1.42903 1.31141 1.24617 0.88447 0.95174 0.98169 1.23058 1.02521 0.99320 0.95607 1.20312 0.99499 0.94976 0.98912 1.19669 0.78026 0.80984 0.82261 1.91030 1.39015 1.76179 1.32319 1.84523 1.53338 1.35706 1.57667 1.22588 0.99788 0.82753 0.98459 1.21284 0.89249 0.98687 0.87822 0.93578 0.95698 0.91361 0.90194 0.90492 0.76106 0.80959 0.72042 0.90682 0.90276 0.95540 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.69 11.20 55.49 0.62 -24.06 16 2 C 0.00 0.09 4.90 -17.43 -0.09 0.01 16 3 Si 0.90 20.72 29.59 -169.99 -5.03 15.69 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -6.52 9.58 -15.06 -0.14 -6.66 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -13.70 2.97 -171.76 -0.51 -14.21 16 10 C 0.13 2.53 6.67 -3.60 -0.02 2.51 16 11 C 0.10 1.70 6.55 -3.60 -0.02 1.67 16 12 N -0.97 -17.41 3.26 -113.01 -0.37 -17.78 16 13 S 2.71 49.10 4.45 -107.50 -0.48 48.63 16 14 O -0.93 -18.00 16.32 -60.20 -0.98 -18.98 16 15 O -0.93 -18.47 16.31 -60.22 -0.98 -19.45 16 16 C -0.47 -7.73 7.34 30.11 0.22 -7.51 16 17 O -0.10 -1.49 10.52 7.71 0.08 -1.41 16 18 C 0.01 0.06 12.03 29.29 0.35 0.42 16 19 C -0.19 -2.08 11.05 -37.44 -0.41 -2.50 16 20 C -0.13 -1.98 6.32 -103.30 -0.65 -2.63 16 21 C 0.55 7.88 8.33 34.38 0.29 8.16 16 22 O -0.50 -8.67 15.60 -23.56 -0.37 -9.04 16 23 O -0.50 -4.80 13.34 -40.70 -0.54 -5.34 16 24 C 0.09 1.68 6.58 -3.37 -0.02 1.66 16 25 C 0.16 3.49 5.53 -3.36 -0.02 3.47 16 26 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 1.25 7.94 -51.93 -0.41 0.83 16 29 H 0.08 1.20 7.09 -51.93 -0.37 0.83 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.22 1.50 8.06 -52.48 -0.42 1.08 16 32 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.42 1.87 9.11 45.56 0.42 2.29 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.36 7.08 -51.93 -0.37 1.00 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 2.49 5.99 -51.93 -0.31 2.18 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -34.80 331.84 -7.21 -42.01 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -3.13 Total: 0.36 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -0.52 Total: -1.40 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.26 Total: -56.06 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -2.79 Total: -54.22 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Atomic # 16 Polarization: 49.10 SS G_CDS: -0.48 Total: 48.63 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.80 -7.21 -42.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.658 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds