Wall clock time and date at job start Tue Mar 31 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47374 * 270.00041 * 3 2 1 5 5 H 1.48498 * 109.46972 * 30.00423 * 3 2 1 6 6 H 1.48504 * 109.47003 * 150.00144 * 3 2 1 7 7 C 1.38804 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 162.55448 * 7 2 1 9 9 N 1.36935 * 120.00405 * 342.82520 * 7 2 1 10 10 C 1.46962 * 120.59568 * 151.29568 * 9 7 2 11 11 C 1.53817 * 108.39975 * 124.76033 * 10 9 7 12 12 N 1.46958 * 108.58063 * 49.63438 * 11 10 9 13 13 S 1.65594 * 120.59538 * 124.62523 * 12 11 10 14 14 O 1.42104 * 106.40094 * 23.56203 * 13 12 11 15 15 O 1.42098 * 106.40435 * 156.48409 * 13 12 11 16 16 C 1.76203 * 107.22191 * 270.02467 * 13 12 11 17 17 N 1.30427 * 125.99180 * 90.01692 * 16 13 12 18 18 N 1.39933 * 108.91728 * 179.97438 * 17 16 13 19 19 H 0.97002 * 125.74206 * 179.97438 * 18 17 16 20 20 C 1.34221 * 108.51286 * 0.02562 * 18 17 16 21 21 C 1.38122 * 107.40894 * 359.76439 * 20 18 17 22 22 C 1.47283 * 126.42875 * 180.22624 * 21 20 18 23 23 O 1.21531 * 120.00431 * 180.16820 * 22 21 20 24 24 O 1.34753 * 120.00150 * 0.16930 * 22 21 20 25 25 C 1.46967 * 118.81430 * 304.65242 * 12 11 10 26 26 C 1.46972 * 120.59045 * 331.57419 * 9 7 2 27 27 H 0.97004 * 120.00040 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.60789 * 244.54097 * 10 9 7 29 29 H 1.09004 * 109.61164 * 5.04970 * 10 9 7 30 30 H 1.09002 * 109.74021 * 289.84554 * 11 10 9 31 31 H 1.08997 * 109.67441 * 169.38598 * 11 10 9 32 32 H 1.08005 * 126.29350 * 180.02562 * 20 18 17 33 33 H 0.96697 * 117.00593 * 180.02562 * 24 22 21 34 34 H 1.09005 * 109.60801 * 295.48249 * 25 12 11 35 35 H 1.08997 * 109.61513 * 174.97058 * 25 12 11 36 36 H 1.08999 * 109.61106 * 354.94403 * 26 9 7 37 37 H 1.08997 * 109.60295 * 115.45931 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0530 -1.2235 -0.2810 9 7 1.3714 -2.3617 0.3491 10 6 1.8065 -3.6517 -0.2045 11 6 2.1102 -4.6041 0.9645 12 7 0.9733 -4.5803 1.8954 13 16 0.1999 -5.9824 2.3174 14 8 1.1327 -7.0338 2.1079 15 8 -0.4242 -5.7352 3.5698 16 6 -1.1000 -6.2316 1.1543 17 7 -1.0083 -6.8885 0.0313 18 7 -2.2512 -6.8646 -0.6111 19 1 -2.4562 -7.2785 -1.4642 20 6 -3.1117 -6.1717 0.1511 21 6 -2.4264 -5.7589 1.2771 22 6 -2.9743 -4.9714 2.3946 23 8 -2.2617 -4.6682 3.3312 24 8 -4.2657 -4.5870 2.3786 25 6 0.5345 -3.2896 2.4447 26 6 0.2343 -2.3379 1.2801 27 1 -0.4850 0.8401 0.0004 28 1 1.0133 -4.0701 -0.8242 29 1 2.7053 -3.5079 -0.8043 30 1 3.0127 -4.2771 1.4809 31 1 2.2518 -5.6163 0.5859 32 1 -4.1501 -5.9768 -0.0727 33 1 -4.5797 -4.0714 3.1340 34 1 1.3248 -2.8690 3.0664 35 1 -0.3664 -3.4332 3.0413 36 1 0.0947 -1.3262 1.6611 37 1 -0.6681 -2.6649 0.7636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608188398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:48 Heat of formation + Delta-G solvation = -39.481328 kcal Electronic energy + Delta-G solvation = -27849.524921 eV Core-core repulsion = 23757.478530 eV Total energy + Delta-G solvation = -4092.046392 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68893 -39.54219 -37.53781 -36.92010 -35.81238 -35.47880 -33.78247 -32.29389 -31.05872 -30.93679 -30.10255 -26.36837 -24.25718 -23.50371 -23.10014 -22.81536 -21.13732 -19.89854 -18.60348 -18.35438 -17.67306 -17.50175 -16.59875 -16.18777 -15.99740 -15.66018 -15.47503 -14.78442 -14.72036 -14.19762 -13.82484 -13.66629 -13.59387 -13.34521 -13.08647 -12.88969 -12.01608 -11.94788 -11.82887 -11.73049 -11.39244 -11.29875 -11.25018 -11.06543 -10.77193 -10.68732 -10.57971 -10.36090 -10.22182 -10.19479 -9.90122 -9.66093 -9.25149 -8.74412 -8.45836 -6.67272 -5.82288 -3.26140 0.56407 1.13035 1.27817 2.30716 3.02335 3.14240 3.33033 3.35704 3.43229 3.46135 3.94281 4.07239 4.47060 4.56855 4.77038 5.13830 5.24823 5.34419 5.47518 5.54942 5.66592 5.86681 6.01957 6.10718 6.36117 6.45692 6.49122 6.60376 6.63371 6.73734 6.83679 6.86052 6.98228 7.31613 7.58722 7.76100 8.06927 8.40018 9.16134 9.79183 10.36771 11.25253 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.004941 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.745016 B = 5665.464116 C = 6185.256854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.132 3.868 11 C 0.101 3.899 12 N -0.972 5.972 13 S 2.697 3.303 14 O -0.952 6.952 15 O -0.904 6.904 16 C -0.417 4.417 17 N -0.180 5.180 18 N -0.448 5.448 19 H 0.450 0.550 20 C 0.129 3.871 21 C -0.206 4.206 22 C 0.531 3.469 23 O -0.455 6.455 24 O -0.520 6.520 25 C 0.090 3.910 26 C 0.160 3.840 27 H 0.254 0.746 28 H 0.019 0.981 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.204 0.796 33 H 0.416 0.584 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.721 -12.352 0.591 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.004 3.996 11 C -0.026 4.026 12 N -0.813 5.813 13 S 2.776 3.224 14 O -0.942 6.942 15 O -0.893 6.893 16 C -0.664 4.664 17 N -0.004 5.004 18 N -0.156 5.156 19 H 0.296 0.704 20 C -0.022 4.022 21 C -0.220 4.220 22 C 0.371 3.629 23 O -0.339 6.339 24 O -0.333 6.333 25 C -0.036 4.036 26 C 0.033 3.967 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.221 0.779 33 H 0.275 0.725 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -7.564 -13.558 0.425 15.531 hybrid contribution -1.153 1.629 -0.430 2.042 sum -8.717 -11.929 -0.005 14.774 Atomic orbital electron populations 1.70023 1.05310 1.25574 1.53843 1.25056 0.95284 0.98486 1.00812 0.86289 0.79238 0.83533 0.77648 1.21493 1.21549 1.20395 1.19198 0.92726 0.84688 1.41573 0.91521 1.43944 1.36540 1.01531 1.49165 1.21360 0.98190 0.87463 0.92583 1.22191 0.87893 1.00576 0.91934 1.57437 1.42179 1.22128 1.59579 1.02574 0.72630 0.73268 0.73941 1.93567 1.59863 1.54545 1.86227 1.93755 1.76237 1.84238 1.35098 1.36024 1.14789 1.05252 1.10331 1.77239 1.00613 1.17241 1.05257 1.46558 1.08015 1.40975 1.20030 0.70444 1.23426 0.97314 0.91425 0.90081 1.18922 0.92631 1.12117 0.98319 1.19650 0.80141 0.78040 0.85033 1.91198 1.58193 1.50886 1.33646 1.84456 1.28205 1.69219 1.51413 1.22506 1.00287 0.82671 0.98126 1.21148 0.88778 0.98699 0.88098 0.93605 0.96289 0.91508 0.90727 0.90167 0.77947 0.72495 0.91237 0.88983 0.88297 0.96469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 11.20 55.49 0.62 -24.88 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.25 -6.74 9.57 -15.06 -0.14 -6.88 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.46 2.96 -171.76 -0.51 -14.97 16 10 C 0.13 2.72 6.70 -3.36 -0.02 2.70 16 11 C 0.10 1.83 6.57 -3.37 -0.02 1.81 16 12 N -0.97 -18.29 3.26 -113.00 -0.37 -18.66 16 13 S 2.70 49.08 5.69 -107.50 -0.61 48.47 16 14 O -0.95 -18.43 16.71 -57.17 -0.96 -19.39 16 15 O -0.90 -17.84 12.88 -67.38 -0.87 -18.70 16 16 C -0.42 -6.88 7.30 -16.97 -0.12 -7.00 16 17 N -0.18 -2.69 12.63 31.51 0.40 -2.29 16 18 N -0.45 -4.52 7.28 30.86 0.22 -4.30 16 19 H 0.45 2.48 8.96 -182.72 -1.64 0.84 16 20 C 0.13 1.30 11.86 -16.55 -0.20 1.10 16 21 C -0.21 -2.99 6.12 -105.08 -0.64 -3.63 16 22 C 0.53 7.86 8.32 34.41 0.29 8.14 16 23 O -0.45 -8.16 11.94 -27.64 -0.33 -8.49 16 24 O -0.52 -5.48 13.26 -40.64 -0.54 -6.02 16 25 C 0.09 1.81 6.55 -3.60 -0.02 1.78 16 26 C 0.16 3.77 5.51 -3.59 -0.02 3.75 16 27 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.31 7.09 -51.93 -0.37 0.94 16 32 H 0.20 1.09 8.06 -52.48 -0.42 0.67 16 33 H 0.42 2.66 9.11 45.56 0.42 3.07 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.09 1.80 5.44 -51.93 -0.28 1.52 16 36 H 0.10 2.57 6.00 -51.93 -0.31 2.26 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 323.48 15.07 4.87 4.87 Total: -1.00 -37.01 323.48 -8.35 -45.35 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.26 Total: 1.03 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.99 Total: 1.75 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: 0.37 Total: -65.10 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -2.69 Total: -52.60 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Atomic # 16 Polarization: 49.08 SS G_CDS: -0.61 Total: 48.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -37.01 -8.35 -45.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.872 kcal (2) G-P(sol) polarization free energy of solvation -37.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds