Wall clock time and date at job start Tue Mar 31 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00353 * 2 1 4 4 H 1.48493 * 109.47327 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47000 * 300.00333 * 3 2 1 6 6 H 1.48501 * 109.46997 * 60.00057 * 3 2 1 7 7 C 1.38811 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99736 * 197.59201 * 7 2 1 9 9 N 1.36936 * 120.00459 * 17.58725 * 7 2 1 10 10 C 1.46962 * 120.59855 * 208.20231 * 9 7 2 11 11 C 1.53370 * 108.63707 * 235.24831 * 10 9 7 12 12 N 1.46967 * 108.63526 * 310.57838 * 11 10 9 13 13 S 1.65602 * 120.59150 * 235.20145 * 12 11 10 14 14 O 1.42095 * 106.40204 * 203.53798 * 13 12 11 15 15 O 1.42095 * 106.40180 * 336.46021 * 13 12 11 16 16 C 1.76200 * 107.21837 * 89.99868 * 13 12 11 17 17 C 1.39640 * 126.05910 * 89.99926 * 16 13 12 18 18 C 1.38490 * 105.35551 * 180.02562 * 17 16 13 19 19 C 1.47005 * 126.89542 * 179.97438 * 18 17 16 20 20 O 1.21551 * 119.99676 * 0.02562 * 19 18 17 21 21 O 1.34813 * 120.00420 * 179.97438 * 19 18 17 22 22 N 1.36646 * 106.21103 * 359.97438 * 18 17 16 23 23 H 0.97008 * 125.19464 * 180.02562 * 22 18 17 24 24 N 1.28449 * 109.60848 * 359.73061 * 22 18 17 25 25 C 1.46960 * 118.81403 * 55.47376 * 12 11 10 26 26 C 1.46971 * 120.59241 * 28.22685 * 9 7 2 27 27 H 0.97000 * 119.99202 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.60933 * 115.50469 * 10 9 7 29 29 H 1.09003 * 109.75070 * 355.07568 * 10 9 7 30 30 H 1.09003 * 109.61496 * 190.82952 * 11 10 9 31 31 H 1.09005 * 109.74879 * 70.40550 * 11 10 9 32 32 H 1.08000 * 127.32577 * 0.02562 * 17 16 13 33 33 H 0.96697 * 117.00792 * 180.02562 * 21 19 18 34 34 H 1.09006 * 109.60981 * 64.27061 * 25 12 11 35 35 H 1.09000 * 109.61455 * 184.77830 * 25 12 11 36 36 H 1.09001 * 109.60970 * 244.49708 * 26 9 7 37 37 H 1.09002 * 109.60879 * 4.83558 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0523 -1.2242 0.2821 9 7 1.3736 -2.3602 -0.3594 10 6 1.8122 -3.6539 0.1826 11 6 2.1175 -4.5974 -0.9874 12 7 0.9836 -4.5687 -1.9219 13 16 0.2143 -5.9693 -2.3568 14 8 -0.4057 -5.7142 -3.6096 15 8 1.1482 -7.0204 -2.1514 16 6 -1.0894 -6.2290 -1.2003 17 6 -2.3993 -5.7602 -1.3193 18 6 -3.0533 -6.2066 -0.1831 19 6 -4.4612 -5.9772 0.1724 20 8 -5.1785 -5.3353 -0.5698 21 8 -4.9570 -6.4797 1.3209 22 7 -2.1273 -6.9030 0.5413 23 1 -2.2945 -7.3368 1.3926 24 7 -1.0032 -6.9006 -0.0803 25 6 0.5485 -3.2757 -2.4683 26 6 0.2396 -2.3317 -1.2939 27 1 -0.4849 0.8401 0.0004 28 1 1.0204 -4.0798 0.7990 29 1 2.7102 -3.5156 0.7849 30 1 2.2574 -5.6114 -0.6128 31 1 3.0219 -4.2686 -1.4994 32 1 -2.8143 -5.1742 -2.1260 33 1 -5.8883 -6.3031 1.5116 34 1 1.3431 -2.8521 -3.0825 35 1 -0.3481 -3.4166 -3.0719 36 1 -0.6642 -2.6634 -0.7827 37 1 0.0978 -1.3171 -1.6662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608188541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:56 Heat of formation + Delta-G solvation = -50.861722 kcal Electronic energy + Delta-G solvation = -26935.743922 eV Core-core repulsion = 22843.204039 eV Total energy + Delta-G solvation = -4092.539882 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.00034 -40.24976 -37.62546 -37.10917 -36.57245 -35.71219 -33.85161 -32.38375 -31.53299 -31.13049 -30.17703 -26.43760 -25.11728 -23.56499 -23.15697 -22.90636 -21.52219 -20.07879 -19.63652 -18.50693 -18.10230 -17.68116 -16.96730 -16.54036 -16.16724 -15.86398 -15.38875 -15.35455 -14.81098 -14.20816 -14.05176 -13.90797 -13.73876 -13.64135 -13.45051 -12.97990 -12.20131 -12.08217 -12.05587 -11.97084 -11.94120 -11.44600 -11.41019 -11.15261 -11.08688 -10.84832 -10.75105 -10.45703 -10.31170 -10.22421 -9.97291 -9.72356 -9.67557 -8.83044 -8.51115 -6.72356 -5.86014 -3.29788 0.47710 0.60914 1.57844 2.16551 2.48569 2.61266 3.18902 3.33623 3.42407 3.44205 3.83675 3.99570 4.44046 4.45727 4.80876 5.05707 5.08537 5.13185 5.30162 5.48880 5.75695 5.77666 5.92000 5.93075 6.04537 6.24721 6.32481 6.36147 6.42406 6.60135 6.79117 6.88652 7.18892 7.23360 7.38888 7.52906 7.73405 8.36009 9.12269 9.75237 10.32139 11.21707 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.004539 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.945091 B = 6166.752353 C = 7520.287145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.132 3.868 11 C 0.104 3.896 12 N -0.977 5.977 13 S 2.720 3.280 14 O -0.947 6.947 15 O -0.947 6.947 16 C -0.532 4.532 17 C -0.050 4.050 18 C -0.037 4.037 19 C 0.563 3.437 20 O -0.487 6.487 21 O -0.516 6.516 22 N -0.341 5.341 23 H 0.456 0.544 24 N -0.145 5.145 25 C 0.092 3.908 26 C 0.156 3.844 27 H 0.254 0.746 28 H 0.020 0.980 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.186 0.814 33 H 0.424 0.576 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.022 0.978 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.500 -13.725 0.836 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.311 5.311 10 C 0.004 3.996 11 C -0.023 4.023 12 N -0.819 5.819 13 S 2.802 3.198 14 O -0.937 6.937 15 O -0.937 6.937 16 C -0.766 4.766 17 C -0.078 4.078 18 C -0.161 4.161 19 C 0.404 3.596 20 O -0.372 6.372 21 O -0.330 6.330 22 N -0.064 5.064 23 H 0.303 0.697 24 N 0.015 4.985 25 C -0.034 4.034 26 C 0.029 3.971 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.204 0.796 33 H 0.284 0.716 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.040 0.960 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.561 -14.576 0.500 15.608 hybrid contribution -1.518 1.426 0.966 2.296 sum -7.079 -13.149 1.466 15.005 Atomic orbital electron populations 1.70029 1.05303 1.25570 1.53733 1.25055 0.95277 0.98514 1.00734 0.86218 0.79403 0.83812 0.77277 1.20207 1.21473 1.21822 1.19242 0.92862 0.84724 1.41449 0.91434 1.43911 1.36708 1.01380 1.49086 1.21268 0.98266 0.87414 0.92667 1.22111 0.87728 1.00733 0.91731 1.57416 1.42999 1.21840 1.59596 1.01609 0.72364 0.72948 0.72899 1.93592 1.78015 1.85260 1.36813 1.93561 1.59750 1.54330 1.86054 1.35375 1.16520 1.12573 1.12127 1.22000 0.90673 0.98104 0.97048 1.20572 0.89778 1.08460 0.97304 1.19136 0.85611 0.76036 0.78833 1.91008 1.58476 1.36942 1.50746 1.84504 1.35268 1.73018 1.40198 1.44124 1.05765 1.37128 1.19342 0.69676 1.73294 1.06242 1.14113 1.04862 1.22519 0.99762 0.82902 0.98221 1.21276 0.89059 0.98881 0.87912 0.93575 0.96238 0.91503 0.89966 0.90761 0.79631 0.71563 0.90862 0.90180 0.96013 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.09 11.20 55.49 0.62 -24.46 16 2 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16 3 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.58 9.58 -15.06 -0.14 -6.73 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -13.84 2.97 -171.76 -0.51 -14.35 16 10 C 0.13 2.58 6.67 -3.60 -0.02 2.56 16 11 C 0.10 1.73 6.55 -3.60 -0.02 1.71 16 12 N -0.98 -16.52 3.26 -113.00 -0.37 -16.89 16 13 S 2.72 43.75 5.86 -107.50 -0.63 43.12 16 14 O -0.95 -16.33 16.55 -57.17 -0.95 -17.28 16 15 O -0.95 -16.64 16.71 -57.17 -0.96 -17.60 16 16 C -0.53 -8.01 7.25 -17.44 -0.13 -8.13 16 17 C -0.05 -0.70 10.64 -38.97 -0.41 -1.12 16 18 C -0.04 -0.46 7.21 -82.08 -0.59 -1.05 16 19 C 0.56 6.23 8.32 34.28 0.29 6.52 16 20 O -0.49 -6.78 17.71 -19.30 -0.34 -7.12 16 21 O -0.52 -3.59 13.44 -40.80 -0.55 -4.14 16 22 N -0.34 -3.79 6.94 33.47 0.23 -3.56 16 23 H 0.46 3.25 8.96 -190.44 -1.71 1.54 16 24 N -0.14 -2.03 12.14 31.23 0.38 -1.66 16 25 C 0.09 1.66 6.58 -3.37 -0.02 1.63 16 26 C 0.16 3.47 5.54 -3.36 -0.02 3.45 16 27 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 30 H 0.08 1.22 7.09 -51.93 -0.37 0.85 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.19 2.37 8.06 -52.49 -0.42 1.95 16 33 H 0.42 1.03 9.11 45.56 0.42 1.44 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.28 7.08 -51.93 -0.37 0.91 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.10 2.49 5.98 -51.93 -0.31 2.18 16 LS Contribution 333.91 15.07 5.03 5.03 Total: -1.00 -34.97 333.91 -8.64 -43.61 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -4.41 Total: 0.59 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.17 Total: -1.18 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.36 Total: -60.92 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -2.79 Total: -46.14 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Atomic # 16 Polarization: 43.75 SS G_CDS: -0.63 Total: 43.12 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.97 -8.64 -43.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.252 kcal (2) G-P(sol) polarization free energy of solvation -34.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds