Wall clock time and date at job start Tue Mar 31 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.33928 * 125.61534 * 2 1 4 4 C 1.34916 * 109.38297 * 180.16733 * 3 2 1 5 5 C 1.46657 * 125.98748 * 179.88562 * 4 3 2 6 6 O 1.21694 * 119.99544 * 179.69248 * 5 4 3 7 7 N 1.34774 * 119.99913 * 359.69103 * 5 4 3 8 8 C 1.47586 * 134.48934 * 179.97438 * 7 5 4 9 9 C 1.53949 * 86.11504 * 155.36070 * 8 7 5 10 10 O 1.42903 * 113.74102 * 269.15490 * 9 8 7 11 11 C 1.50694 * 113.74088 * 137.95266 * 9 8 7 12 12 H 1.08000 * 120.00563 * 1.92388 * 11 9 8 13 13 C 1.37885 * 119.99902 * 181.92552 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.47807 * 134.45633 * 359.87026 * 7 5 4 20 20 C 1.36548 * 108.02046 * 359.62593 * 4 3 2 21 21 C 1.35130 * 125.61360 * 179.75108 * 2 1 3 22 22 S 1.76201 * 126.44587 * 359.97438 * 21 2 1 23 23 N 1.65606 * 107.21351 * 295.02027 * 22 21 2 24 24 O 1.42098 * 106.40359 * 48.55606 * 22 21 2 25 25 O 1.42093 * 106.40471 * 181.47963 * 22 21 2 26 26 H 1.08994 * 109.47215 * 270.24506 * 1 2 3 27 27 H 1.09002 * 109.46836 * 30.24626 * 1 2 3 28 28 H 1.09004 * 109.47128 * 150.24327 * 1 2 3 29 29 H 1.08993 * 113.76952 * 41.05857 * 8 7 5 30 30 H 1.08995 * 113.86700 * 269.67206 * 8 7 5 31 31 H 0.96700 * 113.99800 * 178.07503 * 10 9 8 32 32 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 33 33 H 1.08995 * 113.77163 * 90.38050 * 19 7 5 34 34 H 1.09005 * 113.83876 * 318.91036 * 19 7 5 35 35 H 1.08009 * 126.64144 * 180.26190 * 20 4 3 36 36 H 0.96999 * 119.99775 * 149.99885 * 23 22 21 37 37 H 0.96999 * 120.00226 * 329.99368 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2870 1.0888 0.0000 4 6 3.5824 0.7116 -0.0037 5 6 4.7415 1.6101 -0.0073 6 8 5.8680 1.1498 -0.0049 7 7 4.5590 2.9454 -0.0134 8 6 5.4621 4.1127 -0.0178 9 6 4.2946 4.8817 -0.6625 10 8 4.3014 4.8461 -2.0911 11 6 4.1047 6.2709 -0.1103 12 1 4.7788 6.6491 0.6440 13 6 3.0703 7.0593 -0.5681 14 7 2.2497 6.5990 -1.4871 15 14 2.8345 8.7811 0.1169 16 1 1.9382 8.7249 1.2995 17 1 4.1509 9.3383 0.5193 18 1 2.2270 9.6488 -0.9239 19 6 3.3736 3.8282 -0.0201 20 6 3.6250 -0.6532 0.0023 21 6 2.2940 -1.0985 0.0048 22 16 1.7512 -2.7749 0.0127 23 7 0.9643 -3.0284 1.4476 24 8 0.7689 -2.8834 -1.0083 25 8 2.9240 -3.5762 0.0512 26 1 -0.3633 0.0044 1.0276 27 1 -0.3633 0.8878 -0.5177 28 1 -0.3633 -0.8922 -0.5101 29 1 6.3264 3.9970 -0.6717 30 1 5.7267 4.4694 0.9776 31 1 3.5534 5.3031 -2.4994 32 1 1.5218 7.1535 -1.8089 33 1 3.0225 4.1001 0.9753 34 1 2.5731 3.4859 -0.6761 35 1 4.5114 -1.2704 0.0054 36 1 0.2441 -3.6763 1.4979 37 1 1.2235 -2.5291 2.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645699256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:00 Heat of formation + Delta-G solvation = -107.148242 kcal Electronic energy + Delta-G solvation = -26327.238360 eV Core-core repulsion = 22199.964960 eV Total energy + Delta-G solvation = -4127.273400 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.95937 -39.52083 -37.50363 -37.33523 -36.03028 -34.17798 -33.77597 -33.45918 -32.30739 -32.26582 -29.25910 -27.27158 -25.43369 -25.35539 -22.79886 -22.07701 -20.69852 -19.66815 -19.19378 -17.88505 -17.72610 -17.26900 -16.94497 -16.66547 -15.99581 -15.81780 -15.51995 -15.21235 -14.92176 -14.69071 -14.23654 -13.62717 -13.49877 -13.33531 -13.10465 -12.70204 -12.65486 -12.49155 -12.39360 -12.27627 -12.11735 -12.10754 -11.65606 -11.56743 -11.19238 -11.10230 -10.83966 -10.69035 -10.60505 -10.38952 -10.07617 -9.43130 -8.89759 -8.85555 -8.55242 -8.02099 -6.47239 -4.57959 0.19898 0.90191 1.56546 2.41441 2.96262 3.08951 3.17655 3.20415 3.27606 3.40673 3.46308 4.07883 4.11848 4.23539 4.73594 4.80426 4.84813 5.01150 5.11915 5.32629 5.38320 5.46430 5.65642 5.69549 5.83363 5.99454 6.04354 6.25542 6.33314 6.39863 6.56940 6.66043 6.70159 6.98360 7.54936 7.72054 8.14609 8.41673 8.45591 9.13332 9.33320 10.59772 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.003136 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.672229 B = 8927.396077 C = 9703.334495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.151 3.849 3 O -0.138 6.138 4 C -0.051 4.051 5 C 0.608 3.392 6 O -0.539 6.539 7 N -0.620 5.620 8 C 0.115 3.885 9 C 0.239 3.761 10 O -0.572 6.572 11 C -0.539 4.539 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.909 3.091 16 H -0.277 1.277 17 H -0.270 1.270 18 H -0.283 1.283 19 C 0.080 3.920 20 C -0.057 4.057 21 C -0.778 4.778 22 S 2.734 3.266 23 N -1.250 6.250 24 O -0.962 6.962 25 O -0.958 6.958 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.393 0.607 32 H 0.274 0.726 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.176 0.824 36 H 0.421 0.579 37 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.239 -13.152 6.829 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 O -0.031 6.031 4 C -0.103 4.103 5 C 0.396 3.604 6 O -0.420 6.420 7 N -0.352 5.352 8 C -0.006 4.006 9 C 0.197 3.803 10 O -0.383 6.383 11 C -0.577 4.577 12 H 0.091 0.909 13 C -0.130 4.130 14 N -0.537 5.537 15 Si 0.736 3.264 16 H -0.203 1.203 17 H -0.195 1.195 18 H -0.209 1.209 19 C -0.042 4.042 20 C -0.078 4.078 21 C -0.865 4.865 22 S 2.819 3.181 23 N -0.924 5.924 24 O -0.952 6.952 25 O -0.947 6.947 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.248 0.752 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.193 0.807 36 H 0.251 0.749 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -7.073 -14.068 5.944 16.830 hybrid contribution -0.869 1.707 0.920 2.125 sum -7.942 -12.360 6.864 16.216 Atomic orbital electron populations 1.21035 0.83428 1.07330 1.05466 1.22718 0.94252 0.83060 0.90752 1.84203 1.16699 1.34280 1.67893 1.22533 0.81412 0.94493 1.11869 1.16139 0.85426 0.80597 0.78194 1.90843 1.21821 1.75564 1.53733 1.50232 1.13832 1.02641 1.68483 1.23565 0.96065 0.80452 1.00563 1.19845 0.88366 0.91637 0.80407 1.86068 1.53434 1.79955 1.18883 1.21472 1.13957 0.98656 1.23600 0.90904 1.25078 0.94622 0.99102 0.94199 1.69402 1.17202 1.37966 1.29096 0.86312 0.78670 0.82739 0.78693 1.20309 1.19485 1.20857 1.24491 0.90181 0.88128 1.01398 1.21425 0.95865 0.92864 0.97627 1.31458 1.02015 1.23347 1.29680 1.00619 0.73224 0.72002 0.72217 1.53150 1.53957 1.56450 1.28829 1.93590 1.60445 1.85928 1.55223 1.93603 1.49711 1.65545 1.85834 0.87858 0.87963 0.86810 0.90572 0.89004 0.75237 0.91608 0.89697 0.90872 0.80696 0.74909 0.75481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.20 36.01 0.37 -0.57 16 2 C 0.15 1.88 7.31 -35.41 -0.26 1.62 16 3 O -0.14 -2.24 9.15 5.00 0.05 -2.19 16 4 C -0.05 -0.92 7.07 -36.80 -0.26 -1.18 16 5 C 0.61 12.73 8.02 -12.86 -0.10 12.62 16 6 O -0.54 -12.30 17.59 5.19 0.09 -12.21 16 7 N -0.62 -13.12 3.61 -179.64 -0.65 -13.77 16 8 C 0.11 2.42 8.23 -2.96 -0.02 2.40 16 9 C 0.24 5.58 1.40 -90.83 -0.13 5.45 16 10 O -0.57 -14.42 13.49 -35.23 -0.48 -14.89 16 11 C -0.54 -13.06 8.61 -34.44 -0.30 -13.35 16 12 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 13 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 14 N -0.90 -22.02 11.20 55.43 0.62 -21.40 16 15 Si 0.91 18.84 29.54 -169.99 -5.02 13.82 16 16 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 C 0.08 1.70 7.33 -2.83 -0.02 1.68 16 20 C -0.06 -0.88 10.32 -39.39 -0.41 -1.29 16 21 C -0.78 -9.89 6.18 -39.89 -0.25 -10.13 16 22 S 2.73 28.45 6.08 -107.50 -0.65 27.79 16 23 N -1.25 -6.70 9.52 60.35 0.57 -6.13 16 24 O -0.96 -11.94 16.55 -57.17 -0.95 -12.89 16 25 O -0.96 -13.39 17.79 -57.17 -1.02 -14.41 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.11 0.84 6.49 -51.93 -0.34 0.50 16 29 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 31 H 0.39 9.97 6.60 45.56 0.30 10.27 16 32 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 33 H 0.08 1.71 8.09 -51.93 -0.42 1.29 16 34 H 0.07 1.58 7.54 -51.93 -0.39 1.19 16 35 H 0.18 2.60 8.06 -52.48 -0.42 2.18 16 36 H 0.42 1.32 8.96 -34.47 -0.31 1.01 16 37 H 0.42 1.48 8.96 -34.48 -0.31 1.17 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -33.37 339.27 -6.91 -40.28 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -3.12 Total: 11.96 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.47 Total: -1.08 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.55 Total: -41.29 kcal Atomic # 8 Polarization: -54.29 SS G_CDS: -2.30 Total: -56.59 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Atomic # 16 Polarization: 28.45 SS G_CDS: -0.65 Total: 27.79 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.37 -6.91 -40.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645699256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.870 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds