Wall clock time and date at job start Tue Mar 31 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40374 * 126.64066 * 2 1 4 4 C 1.35129 * 107.11409 * 180.15896 * 3 2 1 5 5 S 1.76196 * 125.61798 * 179.85139 * 4 3 2 6 6 N 1.65608 * 107.21621 * 89.71793 * 5 4 3 7 7 O 1.42099 * 106.40063 * 336.17928 * 5 4 3 8 8 O 1.42097 * 106.40586 * 203.25506 * 5 4 3 9 9 O 1.33938 * 108.76824 * 359.58846 * 4 3 2 10 10 C 1.34914 * 109.38250 * 0.26246 * 9 4 3 11 11 C 1.46661 * 125.99036 * 179.97438 * 10 9 4 12 12 O 1.21689 * 120.00248 * 180.02562 * 11 10 9 13 13 N 1.34774 * 119.99604 * 0.02886 * 11 10 9 14 14 C 1.47070 * 136.05841 * 359.62510 * 13 11 10 15 15 C 1.53240 * 88.08401 * 207.20827 * 14 13 11 16 16 O 1.42893 * 114.19974 * 87.72773 * 15 14 13 17 17 C 1.50696 * 114.32516 * 220.47615 * 15 14 13 18 18 H 1.07993 * 120.00504 * 93.75712 * 17 15 14 19 19 C 1.37889 * 119.99480 * 273.75218 * 17 15 14 20 20 N 1.31514 * 120.00130 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99630 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47011 * 60.00667 * 21 19 17 23 23 H 1.48506 * 109.46782 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47591 * 300.00163 * 21 19 17 25 25 C 1.47064 * 136.05501 * 180.02562 * 13 11 10 26 26 H 1.09001 * 109.47186 * 270.28976 * 1 2 3 27 27 H 1.09000 * 109.47814 * 30.29781 * 1 2 3 28 28 H 1.09008 * 109.46678 * 150.29666 * 1 2 3 29 29 H 1.08001 * 126.44197 * 0.02562 * 3 2 1 30 30 H 0.96999 * 120.00097 * 0.02562 * 6 5 4 31 31 H 0.97005 * 119.99794 * 180.02562 * 6 5 4 32 32 H 1.08997 * 113.46924 * 321.93926 * 14 13 11 33 33 H 1.08993 * 113.46617 * 92.37695 * 14 13 11 34 34 H 0.96699 * 114.00081 * 86.29840 * 16 15 14 35 35 H 0.96992 * 119.99623 * 179.97438 * 20 19 17 36 36 H 1.08996 * 113.46965 * 267.61852 * 25 13 11 37 37 H 1.09002 * 113.46922 * 38.00318 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1264 0.0000 4 6 3.6183 0.6747 -0.0036 5 16 5.0641 1.6817 -0.0088 6 7 5.4668 1.9694 1.5715 7 8 4.6790 2.9339 -0.5592 8 8 6.1075 0.8829 -0.5496 9 8 3.6006 -0.6645 0.0033 10 6 2.3221 -1.0954 0.0056 11 6 1.8844 -2.4952 0.0124 12 8 0.6970 -2.7614 0.0134 13 7 2.7973 -3.4866 0.0175 14 6 4.2654 -3.5744 0.0117 15 6 4.1298 -4.9374 -0.6753 16 8 4.0569 -4.8703 -2.1008 17 6 5.0944 -5.9825 -0.1768 18 1 4.7966 -6.6615 0.6085 19 6 6.3572 -6.0717 -0.7233 20 7 6.7199 -5.2446 -1.6793 21 14 7.5531 -7.3666 -0.1049 22 1 6.9738 -8.7173 -0.3178 23 1 8.8333 -7.2536 -0.8491 24 1 7.8032 -7.1579 1.3439 25 6 2.7638 -4.9569 0.0242 26 1 -0.3633 0.0052 1.0277 27 1 -0.3635 0.8873 -0.5184 28 1 -0.3633 -0.8927 -0.5093 29 1 2.0304 2.1596 0.0004 30 1 4.9266 1.5960 2.2854 31 1 6.2429 2.5114 1.7833 32 1 4.7428 -2.8203 -0.6139 33 1 4.7007 -3.6323 1.0092 34 1 4.9189 -4.8581 -2.5386 35 1 7.6083 -5.3072 -2.0634 36 1 2.7948 -5.3872 1.0252 37 1 1.9666 -5.3757 -0.5900 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645982424.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:21 Heat of formation + Delta-G solvation = -96.095949 kcal Electronic energy + Delta-G solvation = -26638.034385 eV Core-core repulsion = 22511.240248 eV Total energy + Delta-G solvation = -4126.794137 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.89571 -39.66705 -37.67192 -37.40947 -36.10580 -34.47321 -33.98128 -33.50387 -32.22506 -31.09482 -29.20715 -27.47781 -25.53885 -25.24237 -23.46271 -21.53945 -20.36317 -19.64992 -18.92240 -18.39361 -17.80732 -17.67436 -16.88760 -16.48012 -16.15852 -15.88347 -15.66497 -15.13337 -14.68762 -14.32436 -14.15436 -13.72961 -13.30195 -13.18052 -12.91844 -12.73361 -12.59958 -12.49837 -12.35150 -12.32634 -12.21219 -12.09623 -11.59501 -11.53421 -11.08180 -11.06855 -10.80393 -10.53236 -10.32059 -10.12635 -10.03910 -9.39121 -9.14731 -8.82222 -8.51782 -8.05024 -6.42191 -4.53925 -0.04969 0.57209 1.80234 2.46564 2.87416 3.15442 3.21713 3.22894 3.29217 3.30031 3.36177 4.16141 4.45060 4.47061 4.65846 4.81988 4.94451 5.17546 5.30880 5.46989 5.62372 5.67527 5.68912 5.80251 5.91034 5.99241 6.20903 6.28479 6.34754 6.41855 6.60736 6.67835 6.70491 7.02412 7.60171 7.73999 8.09650 8.35375 8.49496 9.17430 9.44004 10.64969 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.004332 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.597283 B = 6461.737498 C = 8202.682834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.131 4.131 3 C -0.088 4.088 4 C -0.571 4.571 5 S 2.736 3.264 6 N -1.246 6.246 7 O -0.944 6.944 8 O -0.935 6.935 9 O -0.094 6.094 10 C 0.009 3.991 11 C 0.609 3.391 12 O -0.531 6.531 13 N -0.618 5.618 14 C 0.067 3.933 15 C 0.243 3.757 16 O -0.572 6.572 17 C -0.538 4.538 18 H 0.074 0.926 19 C 0.073 3.927 20 N -0.894 5.894 21 Si 0.911 3.089 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.110 3.890 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.174 0.826 30 H 0.419 0.581 31 H 0.423 0.577 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.396 0.604 35 H 0.277 0.723 36 H 0.093 0.907 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 13.634 7.439 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.109 4.109 4 C -0.703 4.703 5 S 2.817 3.183 6 N -0.923 5.923 7 O -0.933 6.933 8 O -0.924 6.924 9 O 0.014 5.986 10 C -0.048 4.048 11 C 0.396 3.604 12 O -0.412 6.412 13 N -0.349 5.349 14 C -0.056 4.056 15 C 0.201 3.799 16 O -0.385 6.385 17 C -0.576 4.576 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.738 3.262 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.012 4.012 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.191 0.809 30 H 0.246 0.754 31 H 0.255 0.745 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.253 0.747 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.375 13.725 6.459 15.788 hybrid contribution 0.748 -0.540 0.940 1.317 sum -3.627 13.186 7.399 15.548 Atomic orbital electron populations 1.20417 0.87265 1.04015 1.03029 1.20771 0.98264 0.90334 1.04052 1.21816 0.90521 1.01065 0.97468 1.35473 1.19322 0.91589 1.23901 1.01144 0.71753 0.72976 0.72423 1.52979 1.42962 1.69958 1.26410 1.93656 1.83116 1.40246 1.76324 1.93678 1.52717 1.69751 1.76222 1.84364 1.27754 1.18296 1.68209 1.22941 0.81897 0.95748 1.04251 1.15956 0.84880 0.80702 0.78842 1.90810 1.15115 1.81686 1.53611 1.49756 1.09811 1.07917 1.67390 1.24442 0.76600 1.02583 1.01928 1.19458 0.89882 0.90111 0.80498 1.86032 1.37975 1.96390 1.18123 1.21323 0.97455 1.17383 1.21464 0.90816 1.25100 0.98098 0.95612 0.94195 1.69246 1.21525 1.36709 1.25871 0.86335 0.79521 0.81322 0.79021 1.19803 1.20905 1.19845 1.23481 1.00167 0.76817 1.00713 0.90735 0.91252 0.89069 0.80880 0.75358 0.74512 0.90714 0.89420 0.74677 0.91272 0.88916 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 9.82 36.00 0.35 -0.77 16 2 C -0.13 -1.94 6.20 -104.43 -0.65 -2.59 16 3 C -0.09 -1.09 10.54 -39.88 -0.42 -1.51 16 4 C -0.57 -7.88 7.32 29.63 0.22 -7.66 16 5 S 2.74 31.73 6.43 -107.50 -0.69 31.04 16 6 N -1.25 -8.56 9.55 60.35 0.58 -7.98 16 7 O -0.94 -12.29 17.83 -57.17 -1.02 -13.31 16 8 O -0.93 -15.14 18.02 -57.26 -1.03 -16.18 16 9 O -0.09 -1.64 9.27 4.98 0.05 -1.59 16 10 C 0.01 0.16 7.09 -36.79 -0.26 -0.10 16 11 C 0.61 12.45 8.04 -12.86 -0.10 12.34 16 12 O -0.53 -11.35 15.51 5.20 0.08 -11.27 16 13 N -0.62 -13.11 3.69 -186.94 -0.69 -13.80 16 14 C 0.07 1.47 7.21 -8.63 -0.06 1.41 16 15 C 0.24 5.79 1.57 -91.40 -0.14 5.65 16 16 O -0.57 -14.84 13.53 -35.23 -0.48 -15.32 16 17 C -0.54 -13.24 8.69 -34.44 -0.30 -13.54 16 18 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 19 C 0.07 1.81 5.39 -17.82 -0.10 1.72 16 20 N -0.89 -22.88 11.01 55.43 0.61 -22.27 16 21 Si 0.91 19.24 29.54 -169.99 -5.02 14.22 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 C 0.11 2.31 8.03 -8.51 -0.07 2.24 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.33 6.44 -51.92 -0.33 0.99 16 29 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.42 2.04 8.92 -34.48 -0.31 1.73 16 31 H 0.42 1.98 8.96 -34.48 -0.31 1.67 16 32 H 0.07 1.74 7.53 -51.93 -0.39 1.35 16 33 H 0.09 1.80 8.10 -51.93 -0.42 1.38 16 34 H 0.40 10.46 6.32 45.56 0.29 10.75 16 35 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.09 1.74 8.10 -51.93 -0.42 1.32 16 37 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -33.41 338.59 -7.18 -40.59 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -3.13 Total: 13.58 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.53 Total: -2.82 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.50 Total: -44.05 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: -2.40 Total: -57.67 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Atomic # 16 Polarization: 31.73 SS G_CDS: -0.69 Total: 31.04 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.41 -7.18 -40.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645982424.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.506 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds