Wall clock time and date at job start Tue Mar 31 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65602 * 120.00184 * 2 1 4 4 O 1.42105 * 106.40155 * 311.46017 * 3 2 1 5 5 O 1.42098 * 106.40115 * 178.54214 * 3 2 1 6 6 C 1.76193 * 107.21693 * 65.00276 * 3 2 1 7 7 C 1.34178 * 125.43850 * 90.00141 * 6 3 2 8 8 C 1.47028 * 105.95271 * 180.02562 * 7 6 3 9 9 C 1.47379 * 127.19069 * 179.97438 * 8 7 6 10 10 O 1.21618 * 119.99603 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99855 * 179.97438 * 9 8 7 12 12 C 1.47586 * 134.48934 * 179.97438 * 11 9 8 13 13 C 1.53949 * 86.11504 * 155.36070 * 12 11 9 14 14 O 1.42903 * 113.74102 * 269.15490 * 13 12 11 15 15 C 1.50694 * 113.74088 * 137.95266 * 13 12 11 16 16 H 1.08000 * 120.00563 * 1.92388 * 15 13 12 17 17 C 1.37885 * 119.99902 * 181.92552 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47807 * 134.45633 * 359.87002 * 11 9 8 24 24 C 1.36413 * 105.61531 * 0.22403 * 8 7 6 25 25 O 1.33655 * 108.40005 * 359.63112 * 24 8 7 26 26 H 1.09000 * 109.47162 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46844 * 299.99718 * 1 2 3 28 28 H 1.09001 * 109.47088 * 59.99926 * 1 2 3 29 29 H 0.96999 * 120.00153 * 180.02562 * 2 1 3 30 30 H 1.07992 * 127.02621 * 359.97438 * 7 6 3 31 31 H 1.08993 * 113.76952 * 41.05857 * 12 11 9 32 32 H 1.08995 * 113.86700 * 269.67206 * 12 11 9 33 33 H 0.96700 * 113.99800 * 178.07503 * 14 13 12 34 34 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 35 35 H 1.08995 * 113.77163 * 90.38050 * 23 11 9 36 36 H 1.09005 * 113.83876 * 318.91036 * 23 11 9 37 37 H 1.08001 * 125.80105 * 179.75897 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6738 1.1002 0.0347 6 6 1.9379 2.2414 1.5253 7 6 2.6392 2.1024 2.6608 8 6 1.9745 2.9592 3.6537 9 6 2.3613 3.1560 5.0621 10 8 3.3282 2.5729 5.5142 11 7 1.6437 3.9819 5.8490 12 6 1.7354 4.4052 7.2599 13 6 0.9772 5.6708 6.8204 14 8 1.8320 6.7445 6.4221 15 6 -0.0957 6.1017 7.7870 16 1 -0.2490 5.5519 8.7038 17 6 -0.8816 7.1979 7.5008 18 7 -0.6946 7.8677 6.3845 19 14 -2.2120 7.7315 8.6987 20 1 -2.9100 8.9276 8.1625 21 1 -3.1883 6.6271 8.8783 22 1 -1.5948 8.0644 10.0077 23 6 0.4497 4.8288 5.6441 24 6 0.9216 3.5296 3.0003 25 8 0.9224 3.0932 1.7370 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9500 -0.8400 -0.0004 30 1 3.5128 1.4864 2.8144 31 1 2.7544 4.5977 7.5954 32 1 1.1736 3.7730 7.9474 33 1 1.3594 7.5312 6.1174 34 1 -1.2478 8.6386 6.1831 35 1 -0.4910 4.3204 5.8549 36 1 0.4440 5.3593 4.6919 37 1 0.2096 4.2187 3.4302 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649779547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:21 Heat of formation + Delta-G solvation = -93.378775 kcal Electronic energy + Delta-G solvation = -26069.644506 eV Core-core repulsion = 21942.968194 eV Total energy + Delta-G solvation = -4126.676311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.70712 -39.55433 -37.61876 -37.36779 -36.23575 -35.42094 -34.11016 -33.05922 -32.33817 -30.71241 -28.53767 -26.41347 -25.64328 -25.59183 -23.11189 -22.46367 -20.63919 -19.77783 -19.27681 -18.13374 -17.88517 -17.31544 -16.74612 -16.71024 -16.22570 -15.60478 -15.50404 -15.08362 -15.00115 -14.68952 -14.31123 -14.15434 -13.57429 -13.30868 -13.25855 -13.09823 -12.66267 -12.50916 -12.40554 -12.37987 -12.13813 -12.02761 -11.81859 -11.68608 -11.21057 -11.11614 -10.63821 -10.42354 -10.19568 -10.07653 -9.90267 -9.41159 -9.34924 -8.88236 -8.59312 -8.03396 -6.50512 -4.61453 -0.10198 0.95419 1.54844 2.49811 2.79034 3.09330 3.16244 3.17818 3.26962 3.39084 3.59790 4.09930 4.21034 4.48079 4.61477 4.64070 4.72473 4.93698 5.07605 5.13961 5.32303 5.38215 5.44742 5.56482 5.72246 5.84525 6.04833 6.18497 6.27372 6.42064 6.44206 6.51274 6.54952 6.94188 7.51893 7.68666 8.24045 8.42279 8.55348 9.10258 9.29964 10.56316 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.002923 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.332958 B = 9576.758476 C =10151.013873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.114 6.114 3 S 2.732 3.268 4 O -0.937 6.937 5 O -0.938 6.938 6 C -0.593 4.593 7 C -0.028 4.028 8 C -0.237 4.237 9 C 0.598 3.402 10 O -0.556 6.556 11 N -0.628 5.628 12 C 0.116 3.884 13 C 0.243 3.757 14 O -0.571 6.571 15 C -0.540 4.540 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.898 5.898 19 Si 0.909 3.091 20 H -0.284 1.284 21 H -0.273 1.273 22 H -0.273 1.273 23 C 0.065 3.935 24 C 0.065 3.935 25 O -0.123 6.123 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.422 0.578 30 H 0.176 0.824 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.393 0.607 34 H 0.275 0.725 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.253 -12.775 -11.124 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.875 5.875 3 S 2.812 3.188 4 O -0.927 6.927 5 O -0.928 6.928 6 C -0.721 4.721 7 C -0.050 4.050 8 C -0.242 4.242 9 C 0.388 3.612 10 O -0.437 6.437 11 N -0.361 5.361 12 C -0.006 4.006 13 C 0.201 3.799 14 O -0.383 6.383 15 C -0.578 4.578 16 H 0.090 0.910 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.736 3.264 20 H -0.210 1.210 21 H -0.199 1.199 22 H -0.198 1.198 23 C -0.058 4.058 24 C -0.009 4.009 25 O -0.016 6.016 26 H 0.104 0.896 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.256 0.744 30 H 0.194 0.806 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.248 0.752 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.055 -12.871 -11.800 17.493 hybrid contribution -1.225 0.416 1.366 1.881 sum -2.280 -12.455 -10.433 16.407 Atomic orbital electron populations 1.21562 0.77842 1.04446 1.02610 1.55319 1.16669 1.24231 1.91299 1.01388 0.72827 0.72514 0.72053 1.93612 1.78514 1.68260 1.52281 1.93668 1.29732 1.83298 1.86099 1.35554 1.01030 1.12893 1.22628 1.22957 0.97684 0.95184 0.89165 1.21828 1.00117 1.05642 0.96599 1.16728 0.82833 0.78263 0.83418 1.90742 1.28435 1.49237 1.75308 1.50082 1.29797 1.42747 1.13432 1.23496 1.01425 0.94062 0.81568 1.19797 0.86935 0.83954 0.89229 1.86085 1.37554 1.27676 1.86955 1.21449 1.16077 1.13851 1.06436 0.90955 1.25073 0.97212 0.95377 0.95289 1.69379 1.40789 1.19936 1.23649 0.86366 0.80898 0.78191 0.80956 1.20956 1.19870 1.19809 1.24605 0.87564 0.90976 1.02626 1.25738 0.98144 0.95712 0.81305 1.83946 1.41544 1.47310 1.28800 0.89614 0.91825 0.90884 0.74373 0.80628 0.90772 0.89243 0.75247 0.91481 0.89315 0.91154 0.75415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 11.14 59.85 0.67 1.13 16 2 N -1.11 -7.65 6.19 -16.64 -0.10 -7.76 16 3 S 2.73 29.65 5.89 -107.50 -0.63 29.02 16 4 O -0.94 -12.76 17.74 -57.28 -1.02 -13.77 16 5 O -0.94 -12.13 17.81 -57.17 -1.02 -13.15 16 6 C -0.59 -7.81 7.29 29.30 0.21 -7.60 16 7 C -0.03 -0.42 10.70 -37.45 -0.40 -0.82 16 8 C -0.24 -4.04 6.31 -103.27 -0.65 -4.69 16 9 C 0.60 12.20 8.04 -12.54 -0.10 12.10 16 10 O -0.56 -12.86 17.71 5.26 0.09 -12.77 16 11 N -0.63 -12.64 3.61 -179.37 -0.65 -13.29 16 12 C 0.12 2.39 8.23 -2.96 -0.02 2.37 16 13 C 0.24 5.45 1.40 -90.83 -0.13 5.32 16 14 O -0.57 -13.98 13.49 -35.23 -0.48 -14.45 16 15 C -0.54 -12.72 8.61 -34.44 -0.30 -13.02 16 16 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.07 1.73 5.40 -17.82 -0.10 1.63 16 18 N -0.90 -21.40 11.20 55.43 0.62 -20.78 16 19 Si 0.91 18.51 29.54 -169.99 -5.02 13.49 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C 0.06 1.25 6.59 -2.83 -0.02 1.23 16 24 C 0.06 0.95 11.22 30.07 0.34 1.28 16 25 O -0.12 -1.70 10.52 7.63 0.08 -1.62 16 26 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 29 H 0.42 1.87 8.96 -34.47 -0.31 1.56 16 30 H 0.18 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 33 H 0.39 9.66 6.60 45.56 0.30 9.96 16 34 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 35 H 0.09 1.59 8.09 -51.93 -0.42 1.17 16 36 H 0.07 1.30 6.33 -51.93 -0.33 0.97 16 37 H 0.23 2.93 5.15 -52.49 -0.27 2.66 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -32.52 339.88 -6.60 -39.12 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -3.10 Total: 11.91 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.50 Total: -1.06 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -0.13 Total: -41.82 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -2.34 Total: -55.77 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Atomic # 16 Polarization: 29.65 SS G_CDS: -0.63 Total: 29.02 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.52 -6.60 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649779547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.258 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds