Wall clock time and date at job start Tue Mar 31 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99998 * 2 1 4 4 C 1.53007 * 109.47061 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47102 * 61.68515 * 4 3 2 6 6 C 1.46852 * 110.99763 * 52.42214 * 5 4 3 7 7 C 1.53042 * 109.52027 * 185.83721 * 6 5 4 8 8 C 1.53109 * 109.28116 * 300.82458 * 7 6 5 9 9 C 1.53114 * 109.16520 * 57.65200 * 8 7 6 10 10 H 1.09000 * 109.53294 * 62.31030 * 9 8 7 11 11 N 1.46898 * 109.50812 * 182.40718 * 9 8 7 12 12 C 1.46905 * 110.99669 * 274.80522 * 11 9 8 13 13 C 1.53002 * 109.46894 * 179.97438 * 12 11 9 14 14 H 1.09006 * 109.47467 * 59.99805 * 13 12 11 15 15 O 1.42901 * 109.47253 * 299.99970 * 13 12 11 16 16 C 1.52999 * 109.47352 * 179.97438 * 13 12 11 17 17 N 1.46902 * 109.47253 * 181.64470 * 16 13 12 18 18 C 1.46894 * 110.99880 * 201.05853 * 17 16 13 19 19 C 1.46899 * 110.99619 * 77.10780 * 17 16 13 20 20 C 1.50700 * 109.46907 * 189.99977 * 19 17 16 21 21 H 1.07997 * 120.00188 * 359.97438 * 20 19 17 22 22 C 1.37880 * 120.00111 * 180.02562 * 20 19 17 23 23 N 1.31507 * 119.99963 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99762 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46852 * 90.00500 * 24 22 20 26 26 H 1.48499 * 109.47055 * 210.00091 * 24 22 20 27 27 H 1.48502 * 109.47583 * 330.00224 * 24 22 20 28 28 C 1.46842 * 111.00043 * 176.63536 * 5 4 3 29 29 H 1.08998 * 109.46794 * 299.99537 * 1 2 3 30 30 H 1.08994 * 109.47502 * 59.99405 * 1 2 3 31 31 H 1.09002 * 109.47209 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46692 * 60.00617 * 3 2 1 33 33 H 1.08990 * 109.47247 * 300.00138 * 3 2 1 34 34 H 1.09001 * 109.46982 * 301.69071 * 4 3 2 35 35 H 1.08994 * 109.47259 * 181.68488 * 4 3 2 36 36 H 1.08998 * 109.46032 * 305.85429 * 6 5 4 37 37 H 1.08993 * 109.46269 * 65.83997 * 6 5 4 38 38 H 1.09001 * 109.50044 * 60.76747 * 7 6 5 39 39 H 1.08999 * 109.50045 * 180.83546 * 7 6 5 40 40 H 1.09005 * 109.52299 * 297.74741 * 8 7 6 41 41 H 1.09003 * 109.52314 * 177.56232 * 8 7 6 42 42 H 1.00899 * 111.00483 * 150.85502 * 11 9 8 43 43 H 1.08996 * 109.47320 * 60.00138 * 12 11 9 44 44 H 1.08995 * 109.47369 * 299.99568 * 12 11 9 45 45 H 0.96700 * 114.00355 * 300.00503 * 15 13 12 46 46 H 1.08999 * 109.47190 * 301.65152 * 16 13 12 47 47 H 1.09002 * 109.46927 * 61.64656 * 16 13 12 48 48 H 1.09000 * 109.47620 * 64.25683 * 18 17 16 49 49 H 1.08999 * 109.47098 * 184.25995 * 18 17 16 50 50 H 1.09003 * 109.47195 * 304.25986 * 18 17 16 51 51 H 1.08996 * 109.47085 * 309.99548 * 19 17 16 52 52 H 1.09003 * 109.47226 * 70.00002 * 19 17 16 53 53 H 0.97008 * 120.00204 * 179.97438 * 23 22 20 54 54 H 1.08996 * 109.46588 * 54.14465 * 28 5 4 55 55 H 1.09009 * 109.45367 * 294.16943 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9712 0.4913 -1.2202 6 6 3.4063 1.1272 -2.4174 7 6 3.7605 0.2965 -3.6530 8 6 5.2834 0.1968 -3.7756 9 6 5.8511 -0.4241 -2.4964 10 1 5.4614 -1.4352 -2.3779 11 7 7.3168 -0.4705 -2.5822 12 6 7.7649 -1.6791 -3.2869 13 6 9.2933 -1.6916 -3.3568 14 1 9.7033 -1.6868 -2.3468 15 8 9.7474 -0.5339 -4.0607 16 6 9.7601 -2.9507 -4.0901 17 7 11.2284 -2.9824 -4.1227 18 6 11.7122 -3.8542 -5.2015 19 6 11.7748 -3.3987 -2.8243 20 6 13.2666 -3.1856 -2.8155 21 1 13.7596 -2.7817 -3.6874 22 6 14.0024 -3.5072 -1.6947 23 7 15.3043 -3.3217 -1.6873 24 14 13.1500 -4.2065 -0.1869 25 1 13.1118 -5.6879 -0.2824 26 1 13.8969 -3.8083 1.0333 27 1 11.7637 -3.6793 -0.1127 28 6 5.4364 0.4273 -1.2942 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8554 0.6176 0.8736 35 1 3.9788 2.1799 0.0296 36 1 2.3225 1.1880 -2.3190 37 1 3.8183 2.1305 -2.5243 38 1 3.3372 -0.7030 -3.5531 39 1 3.3537 0.7766 -4.5430 40 1 5.7037 1.1929 -3.9146 41 1 5.5398 -0.4301 -4.6297 42 1 7.7349 -0.4104 -1.6659 43 1 7.3553 -1.6837 -4.2970 44 1 7.4182 -2.5622 -2.7502 45 1 9.4207 -0.4723 -4.9687 46 1 9.3890 -3.8332 -3.5691 47 1 9.3741 -2.9415 -5.1095 48 1 11.4132 -3.4407 -6.1646 49 1 12.7993 -3.9195 -5.1559 50 1 11.2832 -4.8494 -5.0844 51 1 11.3185 -2.8063 -2.0313 52 1 11.5576 -4.4542 -2.6602 53 1 15.8220 -3.5476 -0.8986 54 1 5.8270 -0.0200 -0.3802 55 1 5.8386 1.4343 -1.4064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650154780.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:45 Heat of formation + Delta-G solvation = -107.338886 kcal Electronic energy + Delta-G solvation = -29116.811096 eV Core-core repulsion = 25187.827598 eV Total energy + Delta-G solvation = -3928.983498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 329.247 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.52044 -39.46266 -38.59876 -37.32139 -36.07739 -34.58722 -33.90961 -31.81857 -30.63712 -29.99890 -29.17179 -27.12640 -26.76790 -25.37646 -24.59858 -23.76361 -22.73402 -21.88876 -21.54209 -20.61653 -19.04847 -17.66686 -17.59001 -17.35781 -16.96377 -16.70485 -16.42712 -16.13595 -16.00677 -15.88278 -15.59420 -15.41866 -15.27948 -15.12711 -14.76920 -14.56210 -14.33556 -14.06070 -13.95749 -13.58673 -13.36262 -13.26532 -13.07759 -12.99166 -12.68852 -12.61437 -12.53293 -12.49835 -12.27498 -12.14900 -12.01813 -11.81941 -11.67123 -11.63940 -11.48703 -11.41502 -11.23756 -10.79244 -10.63183 -10.52300 -9.35507 -9.24889 -8.94566 -8.28389 -6.31073 1.31630 1.34315 1.44806 2.33271 2.63194 2.89937 3.03692 3.12721 3.45221 3.72738 3.79124 3.88536 3.96936 4.06026 4.07999 4.21160 4.22920 4.28732 4.34830 4.38712 4.44376 4.47364 4.49236 4.53324 4.55497 4.60472 4.61655 4.62685 4.69480 4.72535 4.78621 4.80609 4.89302 4.91158 4.92553 4.97694 5.00386 5.01472 5.12022 5.18930 5.21904 5.24035 5.44676 5.55487 5.95973 6.00652 6.06382 6.18124 6.34967 6.37753 6.41463 6.66969 6.75086 7.15135 7.31839 8.88489 Molecular weight = 329.25amu Principal moments of inertia in cm(-1) A = 0.016588 B = 0.002138 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.588879 B =13093.028087 C =14089.611450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.060 3.940 4 C 0.054 3.946 5 N -0.539 5.539 6 C 0.053 3.947 7 C -0.111 4.111 8 C -0.103 4.103 9 C 0.096 3.904 10 H 0.041 0.959 11 N -0.681 5.681 12 C 0.044 3.956 13 C 0.124 3.876 14 H 0.066 0.934 15 O -0.552 6.552 16 C 0.024 3.976 17 N -0.541 5.541 18 C 0.040 3.960 19 C 0.174 3.826 20 C -0.514 4.514 21 H 0.036 0.964 22 C 0.005 3.995 23 N -0.948 5.948 24 Si 0.947 3.053 25 H -0.266 1.266 26 H -0.280 1.280 27 H -0.250 1.250 28 C 0.060 3.940 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.339 0.661 43 H 0.089 0.911 44 H 0.040 0.960 45 H 0.377 0.623 46 H 0.038 0.962 47 H 0.095 0.905 48 H 0.079 0.921 49 H 0.045 0.955 50 H 0.022 0.978 51 H 0.025 0.975 52 H -0.016 1.016 53 H 0.266 0.734 54 H 0.070 0.930 55 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.374 8.707 -0.283 35.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C -0.016 4.016 4 C -0.073 4.073 5 N -0.264 5.264 6 C -0.075 4.075 7 C -0.150 4.150 8 C -0.141 4.141 9 C -0.014 4.014 10 H 0.059 0.941 11 N -0.312 5.312 12 C -0.086 4.086 13 C 0.064 3.936 14 H 0.084 0.916 15 O -0.357 6.357 16 C -0.105 4.105 17 N -0.265 5.265 18 C -0.108 4.108 19 C 0.046 3.954 20 C -0.553 4.553 21 H 0.054 0.946 22 C -0.192 4.192 23 N -0.589 5.589 24 Si 0.771 3.229 25 H -0.191 1.191 26 H -0.206 1.206 27 H -0.174 1.174 28 C -0.068 4.068 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.158 0.842 43 H 0.107 0.893 44 H 0.058 0.942 45 H 0.225 0.775 46 H 0.056 0.944 47 H 0.114 0.886 48 H 0.098 0.902 49 H 0.064 0.936 50 H 0.040 0.960 51 H 0.043 0.957 52 H 0.001 0.999 53 H 0.075 0.925 54 H 0.088 0.912 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -33.795 9.033 -0.249 34.983 hybrid contribution -0.025 -0.984 1.113 1.486 sum -33.821 8.049 0.864 34.776 Atomic orbital electron populations 1.22865 0.80255 1.03348 1.00579 1.87988 1.20567 1.28161 1.95460 1.22716 0.92684 0.85036 1.01200 1.22187 0.94250 0.97743 0.93153 1.61846 1.08092 1.53949 1.02527 1.22207 1.00159 0.95408 0.89689 1.21546 0.95332 1.00742 0.97334 1.21528 0.94961 1.00985 0.96626 1.21454 0.86714 0.97884 0.95309 0.94056 1.60403 1.06727 1.39582 1.24495 1.22547 0.94526 0.91053 1.00458 1.21707 0.91769 0.84802 0.95339 0.91632 1.86639 1.75568 1.43594 1.29916 1.22848 0.88241 0.97486 1.01891 1.61728 1.07208 1.52669 1.04862 1.22225 1.00404 0.93884 0.94335 1.19937 0.94042 0.92545 0.88827 1.21281 0.92098 1.41430 1.00472 0.94578 1.25877 0.95390 0.95939 1.02026 1.70053 1.07406 1.50491 1.30944 0.85716 0.79591 0.79169 0.78465 1.19145 1.20586 1.17411 1.22108 0.87833 0.98971 0.97913 0.93294 0.93399 0.89361 0.91500 0.92176 0.90476 0.92298 0.89856 0.94858 0.91929 0.89888 0.92182 0.91902 0.84233 0.89290 0.94216 0.77534 0.94355 0.88633 0.90212 0.93575 0.95975 0.95663 0.99861 0.92462 0.91203 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.40 -6.77 10.60 -148.98 -1.58 -8.35 16 3 C 0.06 0.74 5.56 71.98 0.40 1.14 16 4 C 0.05 0.78 5.52 86.31 0.48 1.25 16 5 N -0.54 -9.29 4.66 -896.35 -4.17 -13.46 16 6 C 0.05 0.77 5.05 86.33 0.44 1.21 16 7 C -0.11 -1.61 6.09 30.64 0.19 -1.43 16 8 C -0.10 -1.77 5.49 30.67 0.17 -1.60 16 9 C 0.10 1.86 2.66 44.97 0.12 1.98 16 10 H 0.04 0.89 7.80 -2.39 -0.02 0.87 16 11 N -0.68 -15.12 6.18 -491.30 -3.04 -18.16 16 12 C 0.04 0.99 5.15 86.30 0.44 1.43 16 13 C 0.12 3.69 3.26 30.59 0.10 3.79 16 14 H 0.07 2.35 6.82 -2.38 -0.02 2.33 16 15 O -0.55 -17.91 13.10 -148.98 -1.95 -19.86 16 16 C 0.02 0.75 4.66 86.30 0.40 1.15 16 17 N -0.54 -22.50 4.57 -927.06 -4.24 -26.74 16 18 C 0.04 1.50 9.35 127.69 1.19 2.70 16 19 C 0.17 8.55 3.61 85.56 0.31 8.86 16 20 C -0.51 -30.79 8.95 25.60 0.23 -30.56 16 21 H 0.04 2.42 7.40 -2.91 -0.02 2.39 16 22 C 0.00 0.28 5.47 84.66 0.46 0.74 16 23 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 24 Si 0.95 45.13 27.47 68.60 1.88 47.02 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 27 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 28 C 0.06 1.11 4.73 86.33 0.41 1.52 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.62 6.09 -2.39 -0.01 0.60 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 1.10 5.81 -2.39 -0.01 1.08 16 37 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.06 1.07 7.54 -2.39 -0.02 1.05 16 42 H 0.34 7.90 8.36 -89.69 -0.75 7.15 16 43 H 0.09 1.71 7.50 -2.39 -0.02 1.69 16 44 H 0.04 0.86 8.06 -2.39 -0.02 0.84 16 45 H 0.38 9.23 9.05 -74.06 -0.67 8.56 16 46 H 0.04 1.15 7.98 -2.39 -0.02 1.13 16 47 H 0.10 2.36 7.91 -2.39 -0.02 2.34 16 48 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 49 H 0.05 2.06 6.67 -2.39 -0.02 2.04 16 50 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.03 1.26 5.75 -2.39 -0.01 1.24 16 52 H -0.02 -0.78 7.55 -2.39 -0.02 -0.80 16 53 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 54 H 0.07 1.31 8.11 -2.39 -0.02 1.29 16 55 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -73.36 420.37 -6.83 -80.20 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -0.62 Total: 26.12 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 6.58 Total: -6.31 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -11.15 Total: -118.80 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -3.53 Total: -28.22 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.02 kcal Total: -73.36 -6.83 -80.20 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650154780.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.144 kcal (2) G-P(sol) polarization free energy of solvation -73.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds