Wall clock time and date at job start Tue Mar 31 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00233 * 2 1 4 4 C 1.53001 * 109.47322 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.46810 * 65.00045 * 4 3 2 6 6 C 1.46850 * 110.99931 * 66.04817 * 5 4 3 7 7 C 1.53036 * 109.52418 * 174.15939 * 6 5 4 8 8 C 1.53117 * 109.27886 * 59.17754 * 7 6 5 9 9 C 1.53120 * 109.16303 * 302.34526 * 8 7 6 10 10 H 1.08996 * 109.50308 * 297.71714 * 9 8 7 11 11 N 1.46893 * 109.50759 * 177.63609 * 9 8 7 12 12 C 1.46894 * 111.00185 * 84.99910 * 11 9 8 13 13 C 1.53005 * 109.47487 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.46470 * 60.00217 * 13 12 11 15 15 O 1.42901 * 109.46976 * 300.00392 * 13 12 11 16 16 C 1.52992 * 109.47341 * 180.02562 * 13 12 11 17 17 N 1.46902 * 109.47042 * 180.46407 * 16 13 12 18 18 C 1.46900 * 111.00108 * 199.84584 * 17 16 13 19 19 C 1.46904 * 110.99942 * 75.89731 * 17 16 13 20 20 C 1.50695 * 109.47081 * 190.00069 * 19 17 16 21 21 H 1.07999 * 120.00068 * 359.97438 * 20 19 17 22 22 C 1.37879 * 120.00108 * 180.02562 * 20 19 17 23 23 N 1.31511 * 119.99985 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99766 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46938 * 90.00589 * 24 22 20 26 26 H 1.48504 * 109.46898 * 210.00194 * 24 22 20 27 27 H 1.48494 * 109.46961 * 330.00295 * 24 22 20 28 28 C 1.46846 * 111.00310 * 301.83574 * 5 4 3 29 29 H 1.08995 * 109.47114 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46889 * 60.00254 * 1 2 3 31 31 H 1.08992 * 109.47527 * 300.00346 * 1 2 3 32 32 H 1.09001 * 109.47263 * 300.00268 * 3 2 1 33 33 H 1.09004 * 109.47076 * 59.99468 * 3 2 1 34 34 H 1.09005 * 109.46806 * 185.00053 * 4 3 2 35 35 H 1.08993 * 109.47322 * 305.00057 * 4 3 2 36 36 H 1.09003 * 109.46194 * 294.17099 * 6 5 4 37 37 H 1.08994 * 109.46650 * 54.14987 * 6 5 4 38 38 H 1.09003 * 109.50537 * 179.11480 * 7 6 5 39 39 H 1.09005 * 109.50306 * 299.19820 * 7 6 5 40 40 H 1.08997 * 109.52677 * 62.24915 * 8 7 6 41 41 H 1.09001 * 109.52568 * 182.44393 * 8 7 6 42 42 H 1.00901 * 111.00166 * 321.04355 * 11 9 8 43 43 H 1.08994 * 109.47315 * 300.00241 * 12 11 9 44 44 H 1.09000 * 109.47088 * 60.00493 * 12 11 9 45 45 H 0.96692 * 114.00146 * 299.99617 * 15 13 12 46 46 H 1.09002 * 109.47199 * 300.46167 * 16 13 12 47 47 H 1.08995 * 109.47407 * 60.46335 * 16 13 12 48 48 H 1.09001 * 109.46649 * 64.82166 * 18 17 16 49 49 H 1.09000 * 109.47319 * 184.82050 * 18 17 16 50 50 H 1.09004 * 109.47268 * 304.82757 * 18 17 16 51 51 H 1.08999 * 109.47123 * 309.99724 * 19 17 16 52 52 H 1.08999 * 109.47084 * 69.99741 * 19 17 16 53 53 H 0.97005 * 119.99672 * 179.97438 * 23 22 20 54 54 H 1.08995 * 109.46224 * 305.85637 * 28 5 4 55 55 H 1.09004 * 109.46111 * 65.82245 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9778 0.5623 -1.2543 6 6 3.6969 1.4344 -2.4018 7 6 4.2991 0.8226 -3.6687 8 6 3.6927 -0.5646 -3.8977 9 6 3.9574 -1.4380 -2.6682 10 1 5.0320 -1.5633 -2.5353 11 7 3.3299 -2.7528 -2.8562 12 6 4.2125 -3.6547 -3.6083 13 6 3.5265 -5.0111 -3.7831 14 1 2.5925 -4.8780 -4.3291 15 8 3.2516 -5.5748 -2.4991 16 6 4.4460 -5.9505 -4.5658 17 7 3.7827 -7.2492 -4.7433 18 6 4.7599 -8.3015 -5.0525 19 6 2.7452 -7.1731 -5.7806 20 6 1.9265 -8.4382 -5.7659 21 1 2.1543 -9.2207 -5.0572 22 6 0.8872 -8.5972 -6.6579 23 7 0.1731 -9.7014 -6.6454 24 14 0.4936 -7.2440 -7.8841 25 1 1.2692 -7.4651 -9.1310 26 1 -0.9585 -7.2641 -8.1942 27 1 0.8572 -5.9273 -7.3018 28 6 3.3651 -0.7606 -1.4303 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 3.9784 2.1766 0.0902 35 1 3.8508 0.5685 0.8426 36 1 2.6187 1.5366 -2.5250 37 1 4.1372 2.4163 -2.2282 38 1 4.0769 1.4623 -4.5229 39 1 5.3792 0.7335 -3.5519 40 1 2.6180 -0.4712 -4.0535 41 1 4.1505 -1.0221 -4.7748 42 1 2.4328 -2.6639 -3.3094 43 1 4.4225 -3.2244 -4.5874 44 1 5.1463 -3.7880 -3.0621 45 1 4.0388 -5.7211 -1.9571 46 1 4.6626 -5.5168 -5.5421 47 1 5.3765 -6.0899 -4.0156 48 1 5.4238 -8.4427 -4.1996 49 1 4.2357 -9.2337 -5.2631 50 1 5.3454 -8.0090 -5.9242 51 1 2.0973 -6.3188 -5.5845 52 1 3.2155 -7.0559 -6.7569 53 1 -0.5584 -9.8130 -7.2727 54 1 3.5644 -1.3730 -0.5509 55 1 2.2885 -0.6481 -1.5579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650154781.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:49 Heat of formation + Delta-G solvation = -106.003708 kcal Electronic energy + Delta-G solvation = -29760.463600 eV Core-core repulsion = 25831.537999 eV Total energy + Delta-G solvation = -3928.925600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 329.247 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.70139 -39.50312 -38.52161 -37.29085 -36.10703 -34.58653 -33.80713 -31.70247 -30.38611 -29.95645 -29.23553 -27.28062 -26.67046 -25.25616 -24.76236 -23.34482 -22.83422 -22.37169 -21.57124 -20.62133 -19.04878 -17.77387 -17.42536 -17.33978 -16.92337 -16.67424 -16.36756 -16.28793 -15.95935 -15.88735 -15.69975 -15.42255 -15.26986 -14.72724 -14.63275 -14.47931 -14.32245 -14.05660 -13.85000 -13.50399 -13.30297 -13.16149 -13.04441 -12.97554 -12.88748 -12.65717 -12.62440 -12.50982 -12.16998 -12.15686 -12.03585 -11.82726 -11.82094 -11.62638 -11.48938 -11.43959 -11.39692 -10.79183 -10.65831 -10.50418 -9.27083 -9.06388 -8.94293 -8.28393 -6.31002 1.30995 1.33957 1.44428 2.33220 2.70167 2.86958 3.04117 3.18734 3.52334 3.78232 3.85688 3.88911 3.97860 4.07275 4.13254 4.16036 4.22677 4.31166 4.36489 4.38526 4.44746 4.47461 4.48880 4.53688 4.56189 4.60517 4.65351 4.69709 4.70066 4.76439 4.79828 4.81403 4.86900 4.92391 5.00043 5.02364 5.04325 5.06740 5.18913 5.19209 5.22358 5.35398 5.38525 5.55544 5.98314 6.05268 6.15442 6.22310 6.31037 6.38694 6.43526 6.67197 6.75179 7.15707 7.31911 8.88663 Molecular weight = 329.25amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.002478 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.981279 B =11294.474544 C =11713.854339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.019 3.981 4 C 0.058 3.942 5 N -0.541 5.541 6 C 0.053 3.947 7 C -0.108 4.108 8 C -0.148 4.148 9 C 0.095 3.905 10 H 0.075 0.925 11 N -0.681 5.681 12 C 0.045 3.955 13 C 0.123 3.877 14 H 0.065 0.935 15 O -0.553 6.553 16 C 0.025 3.975 17 N -0.542 5.542 18 C 0.040 3.960 19 C 0.174 3.826 20 C -0.514 4.514 21 H 0.036 0.964 22 C 0.005 3.995 23 N -0.949 5.949 24 Si 0.947 3.053 25 H -0.265 1.265 26 H -0.280 1.280 27 H -0.251 1.251 28 C 0.079 3.921 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.028 0.972 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.337 0.663 43 H 0.042 0.958 44 H 0.087 0.913 45 H 0.377 0.623 46 H 0.039 0.961 47 H 0.095 0.905 48 H 0.079 0.921 49 H 0.046 0.954 50 H 0.022 0.978 51 H 0.025 0.975 52 H -0.016 1.016 53 H 0.266 0.734 54 H 0.057 0.943 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.738 29.782 10.568 33.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.059 4.059 4 C -0.070 4.070 5 N -0.265 5.265 6 C -0.075 4.075 7 C -0.147 4.147 8 C -0.187 4.187 9 C -0.015 4.015 10 H 0.093 0.907 11 N -0.311 5.311 12 C -0.085 4.085 13 C 0.063 3.937 14 H 0.083 0.917 15 O -0.358 6.358 16 C -0.104 4.104 17 N -0.266 5.266 18 C -0.109 4.109 19 C 0.047 3.953 20 C -0.552 4.552 21 H 0.054 0.946 22 C -0.192 4.192 23 N -0.590 5.590 24 Si 0.771 3.229 25 H -0.191 1.191 26 H -0.206 1.206 27 H -0.175 1.175 28 C -0.049 4.049 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.155 0.845 43 H 0.060 0.940 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.057 0.943 47 H 0.113 0.887 48 H 0.097 0.903 49 H 0.064 0.936 50 H 0.041 0.959 51 H 0.043 0.957 52 H 0.002 0.998 53 H 0.075 0.925 54 H 0.076 0.924 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.588 29.112 11.362 32.689 hybrid contribution -0.963 0.616 -2.173 2.456 sum 8.625 29.728 9.188 32.289 Atomic orbital electron populations 1.22809 0.80811 1.03096 1.00400 1.88103 1.20403 1.28349 1.95010 1.23410 0.96307 0.85095 1.01058 1.22385 0.90587 1.01488 0.92534 1.62028 1.58785 1.03128 1.02565 1.22164 0.98192 0.96689 0.90458 1.21487 1.00800 0.95257 0.97109 1.22292 1.00625 0.97311 0.98518 1.21569 0.98663 0.87066 0.94189 0.90659 1.60280 1.05809 1.10966 1.54058 1.22516 0.96695 0.92288 0.96970 1.21721 0.97382 0.90130 0.84468 0.91744 1.86636 1.36874 1.84965 1.27360 1.22839 0.97719 0.90203 0.99631 1.61727 1.13130 1.05172 1.46530 1.22226 0.94087 0.95239 0.99305 1.19934 0.90908 0.96055 0.88448 1.21280 1.14426 1.02285 1.17236 0.94590 1.25873 0.95648 0.98146 0.99515 1.70057 1.21542 1.28375 1.39020 0.85716 0.77751 0.80236 0.79241 1.19053 1.20572 1.17476 1.21999 0.97367 0.88740 0.96804 0.89844 0.93953 0.93000 0.93158 0.91722 0.87097 0.90400 0.95398 0.89275 0.90437 0.91140 0.92747 0.92154 0.84490 0.93954 0.89458 0.77538 0.94296 0.88654 0.90272 0.93550 0.95905 0.95701 0.99830 0.92459 0.92394 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -7.56 7.15 -148.98 -1.06 -8.63 16 3 C 0.02 0.26 5.75 71.98 0.41 0.67 16 4 C 0.06 0.76 5.93 86.30 0.51 1.27 16 5 N -0.54 -8.86 4.86 -896.37 -4.35 -13.22 16 6 C 0.05 0.71 5.06 86.32 0.44 1.15 16 7 C -0.11 -1.50 6.09 30.65 0.19 -1.31 16 8 C -0.15 -2.56 5.25 30.67 0.16 -2.40 16 9 C 0.10 1.90 2.63 44.97 0.12 2.02 16 10 H 0.08 1.57 7.80 -2.39 -0.02 1.56 16 11 N -0.68 -16.00 6.12 -491.33 -3.01 -19.01 16 12 C 0.05 1.03 5.15 86.31 0.44 1.48 16 13 C 0.12 3.75 3.24 30.59 0.10 3.85 16 14 H 0.06 2.35 6.78 -2.39 -0.02 2.33 16 15 O -0.55 -18.73 13.08 -148.98 -1.95 -20.68 16 16 C 0.02 0.78 4.66 86.30 0.40 1.18 16 17 N -0.54 -22.74 4.56 -927.06 -4.22 -26.97 16 18 C 0.04 1.51 9.37 127.69 1.20 2.71 16 19 C 0.17 8.59 3.62 85.55 0.31 8.90 16 20 C -0.51 -30.85 8.94 25.60 0.23 -30.62 16 21 H 0.04 2.42 7.41 -2.91 -0.02 2.39 16 22 C 0.01 0.31 5.47 84.66 0.46 0.77 16 23 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 24 Si 0.95 45.10 27.47 68.60 1.88 46.98 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 27 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 28 C 0.08 1.63 3.83 86.33 0.33 1.96 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.65 6.46 -2.39 -0.02 0.63 16 33 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.11 0.92 8.06 -2.38 -0.02 0.90 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.03 0.41 6.65 -2.39 -0.02 0.39 16 37 H 0.09 0.90 8.06 -2.39 -0.02 0.88 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 41 H 0.06 1.06 7.52 -2.39 -0.02 1.04 16 42 H 0.34 8.42 8.45 -89.69 -0.76 7.66 16 43 H 0.04 0.90 7.49 -2.39 -0.02 0.88 16 44 H 0.09 1.75 8.06 -2.39 -0.02 1.73 16 45 H 0.38 9.83 9.04 -74.06 -0.67 9.16 16 46 H 0.04 1.16 8.00 -2.39 -0.02 1.14 16 47 H 0.10 2.40 7.94 -2.39 -0.02 2.38 16 48 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.05 2.08 6.66 -2.39 -0.02 2.07 16 50 H 0.02 0.79 8.13 -2.38 -0.02 0.77 16 51 H 0.03 1.25 5.69 -2.39 -0.01 1.23 16 52 H -0.02 -0.77 7.55 -2.39 -0.02 -0.78 16 53 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 54 H 0.06 1.44 8.12 -2.39 -0.02 1.42 16 55 H 0.05 1.25 5.58 -2.38 -0.01 1.24 16 Total: -1.00 -72.80 414.93 -6.49 -79.30 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.63 Total: 29.59 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 6.55 Total: -6.75 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -11.29 Total: -119.83 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -3.01 Total: -29.30 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -72.80 -6.49 -79.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650154781.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.706 kcal (2) G-P(sol) polarization free energy of solvation -72.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds