Wall clock time and date at job start Tue Mar 31 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99887 * 2 1 4 4 C 1.53002 * 109.46936 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47156 * 62.29696 * 4 3 2 6 6 C 1.46839 * 111.00116 * 52.14296 * 5 4 3 7 7 C 1.53033 * 109.52484 * 185.84250 * 6 5 4 8 8 C 1.53123 * 109.27901 * 300.81872 * 7 6 5 9 9 C 1.53120 * 109.15635 * 57.65515 * 8 7 6 10 10 H 1.08994 * 109.50575 * 62.28960 * 9 8 7 11 11 N 1.46905 * 109.53414 * 182.38815 * 9 8 7 12 12 C 1.46897 * 110.99760 * 274.90216 * 11 9 8 13 13 C 1.53001 * 109.47112 * 180.02562 * 12 11 9 14 14 H 1.09009 * 109.46679 * 304.99497 * 13 12 11 15 15 O 1.42893 * 109.47307 * 64.99608 * 13 12 11 16 16 C 1.53000 * 109.47195 * 184.99917 * 13 12 11 17 17 N 1.46904 * 109.47242 * 179.97438 * 16 13 12 18 18 C 1.46892 * 111.00159 * 293.95663 * 17 16 13 19 19 C 1.46899 * 111.00028 * 169.99869 * 17 16 13 20 20 C 1.50699 * 109.47189 * 190.00444 * 19 17 16 21 21 H 1.08001 * 119.99734 * 359.97438 * 20 19 17 22 22 C 1.37873 * 119.99978 * 180.02562 * 20 19 17 23 23 N 1.31510 * 120.00210 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99894 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47326 * 89.99694 * 24 22 20 26 26 H 1.48505 * 109.46883 * 209.99561 * 24 22 20 27 27 H 1.48499 * 109.46968 * 329.99469 * 24 22 20 28 28 C 1.46846 * 111.00211 * 176.35554 * 5 4 3 29 29 H 1.09004 * 109.46550 * 299.99321 * 1 2 3 30 30 H 1.08998 * 109.47258 * 59.99283 * 1 2 3 31 31 H 1.08999 * 109.46840 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47100 * 60.00659 * 3 2 1 33 33 H 1.09001 * 109.47525 * 300.00517 * 3 2 1 34 34 H 1.09006 * 109.46957 * 302.29773 * 4 3 2 35 35 H 1.08997 * 109.47482 * 182.29529 * 4 3 2 36 36 H 1.09009 * 109.46189 * 305.85652 * 6 5 4 37 37 H 1.08995 * 109.46536 * 65.83341 * 6 5 4 38 38 H 1.09003 * 109.50619 * 60.75898 * 7 6 5 39 39 H 1.09005 * 109.50453 * 180.87960 * 7 6 5 40 40 H 1.08998 * 109.52447 * 297.75220 * 8 7 6 41 41 H 1.08995 * 109.52272 * 177.55847 * 8 7 6 42 42 H 1.00898 * 111.00142 * 38.85519 * 11 9 8 43 43 H 1.09001 * 109.47025 * 299.99877 * 12 11 9 44 44 H 1.08996 * 109.47568 * 59.99914 * 12 11 9 45 45 H 0.96701 * 114.00297 * 60.00490 * 15 13 12 46 46 H 1.08996 * 109.47135 * 299.99993 * 16 13 12 47 47 H 1.09006 * 109.46965 * 59.99669 * 16 13 12 48 48 H 1.08998 * 109.47455 * 59.99905 * 18 17 16 49 49 H 1.09004 * 109.47150 * 179.97438 * 18 17 16 50 50 H 1.09000 * 109.47248 * 299.99800 * 18 17 16 51 51 H 1.08997 * 109.47065 * 310.00762 * 19 17 16 52 52 H 1.08996 * 109.47018 * 70.00036 * 19 17 16 53 53 H 0.96999 * 120.00106 * 180.02562 * 23 22 20 54 54 H 1.09004 * 109.46445 * 54.14150 * 28 5 4 55 55 H 1.09005 * 109.45201 * 294.17131 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9723 0.5043 -1.2272 6 6 3.4032 1.1487 -2.4176 7 6 3.7587 0.3308 -3.6612 8 6 5.2820 0.2385 -3.7870 9 6 5.8540 -0.3919 -2.5142 10 1 5.4680 -1.4053 -2.4048 11 7 7.3198 -0.4323 -2.6021 12 6 7.7713 -1.6317 -3.3201 13 6 9.2997 -1.6388 -3.3906 14 1 9.6471 -0.7076 -3.8384 15 8 9.8368 -1.7628 -2.0722 16 6 9.7654 -2.8200 -4.2442 17 7 11.2328 -2.8266 -4.3124 18 6 11.7313 -1.6517 -5.0398 19 6 11.7261 -4.0700 -4.9194 20 6 13.2214 -4.1522 -4.7515 21 1 13.7523 -3.3598 -4.2448 22 6 13.9119 -5.2385 -5.2455 23 7 13.2656 -6.2032 -5.8629 24 14 15.7655 -5.3408 -5.0367 25 1 16.0825 -6.0331 -3.7618 26 1 16.3502 -6.1001 -6.1710 27 1 16.3370 -3.9704 -5.0113 28 6 5.4376 0.4469 -1.3039 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8547 0.6083 0.8678 35 1 3.9788 2.1795 0.0405 36 1 2.3191 1.2043 -2.3172 37 1 3.8108 2.1547 -2.5159 38 1 3.3397 -0.6713 -3.5699 39 1 3.3494 0.8178 -4.5464 40 1 5.6980 1.2375 -3.9174 41 1 5.5396 -0.3795 -4.6471 42 1 7.6794 0.4051 -3.0351 43 1 7.4281 -2.5216 -2.7926 44 1 7.3607 -1.6268 -4.3297 45 1 9.5686 -2.5703 -1.6126 46 1 9.4180 -3.7511 -3.7965 47 1 9.3556 -2.7254 -5.2499 48 1 11.4092 -0.7444 -4.5288 49 1 12.8203 -1.6813 -5.0750 50 1 11.3343 -1.6575 -6.0549 51 1 11.2580 -4.9239 -4.4299 52 1 11.4786 -4.0792 -5.9809 53 1 13.7513 -6.9676 -6.2101 54 1 5.8314 -0.0072 -0.3945 55 1 5.8355 1.4564 -1.4073 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650154782.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:54 Heat of formation + Delta-G solvation = -110.704622 kcal Electronic energy + Delta-G solvation = -28791.833676 eV Core-core repulsion = 24862.704229 eV Total energy + Delta-G solvation = -3929.129447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 329.247 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.53647 -39.47120 -38.60104 -37.27274 -36.14253 -34.60521 -33.81331 -31.75759 -30.60339 -29.56846 -28.73852 -27.12572 -27.09718 -25.50203 -24.75632 -23.56459 -22.74106 -22.09360 -21.63706 -20.75865 -18.56149 -17.70146 -17.49985 -17.31795 -17.02850 -16.72382 -16.43125 -16.04185 -15.92056 -15.78559 -15.75275 -15.34045 -15.26475 -15.14006 -14.73847 -14.54549 -14.12883 -13.98209 -13.81364 -13.57853 -13.39498 -13.14917 -13.07386 -12.81378 -12.70952 -12.59406 -12.53504 -12.49771 -12.37014 -12.25094 -12.00147 -11.98495 -11.72579 -11.60858 -11.54362 -11.40339 -11.33574 -10.61719 -10.61065 -10.50849 -9.31716 -9.15887 -8.94893 -8.20508 -6.30488 1.41341 1.43232 1.54247 2.40498 2.65507 2.92135 3.11583 3.17138 3.52126 3.75214 3.81371 3.85483 3.96307 3.99616 4.06252 4.19716 4.22334 4.26902 4.35033 4.39489 4.44922 4.48936 4.52436 4.54051 4.57228 4.61697 4.63824 4.69882 4.71426 4.75024 4.76192 4.78895 4.90381 4.92315 4.96203 5.01787 5.06407 5.07114 5.16182 5.18608 5.22788 5.31916 5.35131 5.64975 5.98798 6.05854 6.10923 6.22377 6.33065 6.37422 6.45487 6.64548 6.85725 7.05781 7.39297 8.90441 Molecular weight = 329.25amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.001682 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.827943 B =16641.564296 C =16683.361576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.059 3.941 4 C 0.056 3.944 5 N -0.542 5.542 6 C 0.054 3.946 7 C -0.109 4.109 8 C -0.146 4.146 9 C 0.098 3.902 10 H 0.070 0.930 11 N -0.678 5.678 12 C 0.043 3.957 13 C 0.131 3.869 14 H 0.091 0.909 15 O -0.553 6.553 16 C 0.024 3.976 17 N -0.538 5.538 18 C 0.041 3.959 19 C 0.207 3.793 20 C -0.524 4.524 21 H 0.061 0.939 22 C 0.001 3.999 23 N -0.935 5.935 24 Si 0.970 3.030 25 H -0.273 1.273 26 H -0.281 1.281 27 H -0.265 1.265 28 C 0.077 3.923 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.035 0.965 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.344 0.656 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.378 0.622 46 H 0.067 0.933 47 H 0.031 0.969 48 H 0.076 0.924 49 H 0.054 0.946 50 H 0.010 0.990 51 H 0.004 0.996 52 H -0.039 1.039 53 H 0.264 0.736 54 H 0.070 0.930 55 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.985 18.887 8.820 34.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C -0.017 4.017 4 C -0.071 4.071 5 N -0.268 5.268 6 C -0.074 4.074 7 C -0.147 4.147 8 C -0.185 4.185 9 C -0.013 4.013 10 H 0.089 0.911 11 N -0.308 5.308 12 C -0.087 4.087 13 C 0.071 3.929 14 H 0.109 0.891 15 O -0.358 6.358 16 C -0.105 4.105 17 N -0.262 5.262 18 C -0.107 4.107 19 C 0.080 3.920 20 C -0.562 4.562 21 H 0.079 0.921 22 C -0.197 4.197 23 N -0.575 5.575 24 Si 0.795 3.205 25 H -0.199 1.199 26 H -0.207 1.207 27 H -0.189 1.189 28 C -0.051 4.051 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.162 0.838 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.085 0.915 47 H 0.049 0.951 48 H 0.095 0.905 49 H 0.073 0.927 50 H 0.029 0.971 51 H 0.022 0.978 52 H -0.022 1.022 53 H 0.073 0.927 54 H 0.088 0.912 55 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -26.485 18.391 9.712 33.675 hybrid contribution 0.214 0.024 -1.880 1.893 sum -26.271 18.415 7.832 33.024 Atomic orbital electron populations 1.22863 0.80305 1.03323 1.00548 1.87994 1.20522 1.28232 1.95452 1.22735 0.92850 0.84995 1.01139 1.22164 0.94031 0.97875 0.93070 1.61797 1.08568 1.54121 1.02285 1.22180 1.00170 0.95274 0.89759 1.21480 0.95048 1.00870 0.97345 1.22280 0.96957 1.01096 0.98186 1.21458 0.86450 0.99494 0.93868 0.91127 1.60290 1.08803 1.04757 1.56974 1.22507 0.94786 0.94285 0.97163 1.21710 0.91041 0.96899 0.83236 0.89081 1.86539 1.75351 1.46458 1.27477 1.22837 0.88871 0.99977 0.98863 1.61918 1.07796 1.03126 1.53393 1.22213 1.00690 0.93137 0.94654 1.19402 0.95138 0.87088 0.90322 1.21477 0.93007 1.05751 1.36008 0.92077 1.25916 1.03903 0.95127 0.94736 1.70081 1.37856 1.10214 1.39376 0.85367 0.78895 0.78460 0.77789 1.19867 1.20654 1.18937 1.21857 0.86555 0.98229 0.98492 0.93237 0.93484 0.89416 0.91500 0.92262 0.90478 0.92222 0.90027 0.94714 0.92059 0.90285 0.91555 0.92141 0.83765 0.90589 0.93856 0.77457 0.91495 0.95091 0.90543 0.92740 0.97101 0.97819 1.02158 0.92687 0.91157 0.94837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.81 10.61 -148.98 -1.58 -8.39 16 3 C 0.06 0.71 5.57 71.98 0.40 1.11 16 4 C 0.06 0.78 5.52 86.30 0.48 1.25 16 5 N -0.54 -9.08 4.67 -896.36 -4.18 -13.27 16 6 C 0.05 0.74 5.04 86.33 0.44 1.18 16 7 C -0.11 -1.54 6.09 30.65 0.19 -1.36 16 8 C -0.15 -2.25 5.26 30.68 0.16 -2.09 16 9 C 0.10 1.79 2.63 44.97 0.12 1.91 16 10 H 0.07 1.53 7.80 -2.39 -0.02 1.51 16 11 N -0.68 -13.67 6.20 -491.31 -3.05 -16.72 16 12 C 0.04 0.94 5.12 86.30 0.44 1.38 16 13 C 0.13 3.64 3.02 30.59 0.09 3.74 16 14 H 0.09 2.52 6.55 -2.38 -0.02 2.51 16 15 O -0.55 -17.32 13.15 -148.98 -1.96 -19.28 16 16 C 0.02 0.83 4.62 86.30 0.40 1.23 16 17 N -0.54 -23.78 4.62 -927.07 -4.28 -28.06 16 18 C 0.04 1.64 9.14 127.69 1.17 2.81 16 19 C 0.21 11.29 4.72 85.56 0.40 11.70 16 20 C -0.52 -30.53 8.46 25.60 0.22 -30.31 16 21 H 0.06 3.52 7.12 -2.91 -0.02 3.50 16 22 C 0.00 0.06 5.46 84.65 0.46 0.52 16 23 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 24 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 28 C 0.08 1.37 5.07 86.33 0.44 1.81 16 29 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.59 6.05 -2.39 -0.01 0.58 16 34 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 1.05 5.79 -2.38 -0.01 1.04 16 37 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 41 H 0.06 0.98 7.53 -2.39 -0.02 0.96 16 42 H 0.34 6.50 8.45 -89.70 -0.76 5.74 16 43 H 0.08 1.70 8.06 -2.39 -0.02 1.68 16 44 H 0.04 0.90 7.50 -2.39 -0.02 0.88 16 45 H 0.38 10.18 9.05 -74.06 -0.67 9.51 16 46 H 0.07 2.35 7.93 -2.39 -0.02 2.33 16 47 H 0.03 1.05 8.12 -2.38 -0.02 1.03 16 48 H 0.08 2.57 6.47 -2.39 -0.02 2.55 16 49 H 0.05 2.36 6.76 -2.38 -0.02 2.35 16 50 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.00 0.22 7.93 -2.39 -0.02 0.20 16 52 H -0.04 -2.31 8.12 -2.39 -0.02 -2.33 16 53 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 54 H 0.07 1.43 8.12 -2.39 -0.02 1.41 16 55 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -69.06 423.44 -6.67 -75.73 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -0.58 Total: 23.16 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 6.65 Total: -3.60 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -11.23 Total: -114.78 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -3.54 Total: -27.67 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.06 -6.67 -75.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650154782.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.976 kcal (2) G-P(sol) polarization free energy of solvation -69.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds