Wall clock time and date at job start Tue Mar 31 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99988 * 2 1 4 4 C 1.53002 * 109.47184 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46864 * 64.16964 * 4 3 2 6 6 C 1.46854 * 110.99739 * 195.89665 * 5 4 3 7 7 C 1.53036 * 109.52367 * 174.15909 * 6 5 4 8 8 C 1.53128 * 109.27561 * 59.17750 * 7 6 5 9 9 C 1.53121 * 109.16097 * 302.34420 * 8 7 6 10 10 H 1.09002 * 109.50381 * 297.67648 * 9 8 7 11 11 N 1.46895 * 109.50553 * 177.59617 * 9 8 7 12 12 C 1.46905 * 110.99991 * 85.07772 * 11 9 8 13 13 C 1.52996 * 109.47202 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.47021 * 305.00073 * 13 12 11 15 15 O 1.42900 * 109.47048 * 65.00292 * 13 12 11 16 16 C 1.53003 * 109.46913 * 185.00039 * 13 12 11 17 17 N 1.46904 * 109.46910 * 179.97438 * 16 13 12 18 18 C 1.46895 * 111.00253 * 293.95712 * 17 16 13 19 19 C 1.46897 * 110.99782 * 169.99716 * 17 16 13 20 20 C 1.50702 * 109.47221 * 190.00125 * 19 17 16 21 21 H 1.08003 * 119.99644 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00539 * 180.02562 * 20 19 17 23 23 N 1.31507 * 120.00495 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99463 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47341 * 270.00415 * 24 22 20 26 26 H 1.48497 * 109.47475 * 30.00700 * 24 22 20 27 27 H 1.48502 * 109.47140 * 150.00428 * 24 22 20 28 28 C 1.46840 * 110.99803 * 71.64319 * 5 4 3 29 29 H 1.08991 * 109.47236 * 300.00334 * 1 2 3 30 30 H 1.09001 * 109.46777 * 60.00386 * 1 2 3 31 31 H 1.09004 * 109.46777 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47558 * 59.99629 * 3 2 1 33 33 H 1.08999 * 109.46892 * 299.99518 * 3 2 1 34 34 H 1.08995 * 109.47105 * 304.17070 * 4 3 2 35 35 H 1.08994 * 109.47204 * 184.16817 * 4 3 2 36 36 H 1.08997 * 109.46481 * 54.14431 * 6 5 4 37 37 H 1.09001 * 109.45945 * 294.17206 * 6 5 4 38 38 H 1.08996 * 109.50611 * 299.24024 * 7 6 5 39 39 H 1.08992 * 109.50606 * 179.11691 * 7 6 5 40 40 H 1.08999 * 109.52103 * 182.44183 * 8 7 6 41 41 H 1.08992 * 109.52297 * 62.24998 * 8 7 6 42 42 H 1.00905 * 110.99893 * 321.13276 * 11 9 8 43 43 H 1.09000 * 109.47047 * 59.99710 * 12 11 9 44 44 H 1.09004 * 109.47105 * 300.00601 * 12 11 9 45 45 H 0.96692 * 114.00225 * 60.00173 * 15 13 12 46 46 H 1.09001 * 109.47305 * 60.00330 * 16 13 12 47 47 H 1.08997 * 109.47305 * 299.99860 * 16 13 12 48 48 H 1.09009 * 109.46888 * 296.04687 * 18 17 16 49 49 H 1.08999 * 109.47344 * 56.04603 * 18 17 16 50 50 H 1.09000 * 109.47337 * 176.04926 * 18 17 16 51 51 H 1.09001 * 109.46659 * 70.00642 * 19 17 16 52 52 H 1.08992 * 109.47891 * 310.00178 * 19 17 16 53 53 H 0.97000 * 120.00224 * 179.97438 * 23 22 20 54 54 H 1.08999 * 109.42953 * 65.80235 * 28 5 4 55 55 H 1.09003 * 109.49693 * 305.83305 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9764 0.5442 -1.2457 6 6 5.3619 0.0706 -1.1324 7 6 5.7379 -0.7163 -2.3900 8 6 5.5865 0.1881 -3.6163 9 6 4.1472 0.7064 -3.6839 10 1 3.4632 -0.1336 -3.8052 11 7 4.0082 1.6207 -4.8252 12 6 3.7305 0.8796 -6.0628 13 6 3.5932 1.8633 -7.2265 14 1 2.8339 2.6072 -6.9857 15 8 4.8451 2.5152 -7.4493 16 6 3.1814 1.1045 -8.4898 17 7 3.0490 2.0491 -9.6070 18 6 1.9358 2.9803 -9.3800 19 6 2.8885 1.3373 -10.8819 20 6 3.0021 2.3166 -12.0218 21 1 3.1766 3.3630 -11.8193 22 6 2.8833 1.8767 -13.3231 23 7 2.9830 2.7312 -14.3178 24 14 2.5823 0.0667 -13.6732 25 1 3.8842 -0.6328 -13.8178 26 1 1.8193 -0.5346 -12.5501 27 1 1.8039 -0.0715 -14.9304 28 6 3.8164 1.4517 -2.3889 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8518 0.5807 0.8511 35 1 3.9786 2.1776 0.0753 36 1 5.4549 -0.5747 -0.2589 37 1 6.0301 0.9251 -1.0254 38 1 5.0789 -1.5787 -2.4903 39 1 6.7712 -1.0542 -2.3125 40 1 5.8115 -0.3808 -4.5185 41 1 6.2734 1.0304 -3.5349 42 1 4.8285 2.1995 -4.9268 43 1 2.8030 0.3182 -5.9497 44 1 4.5501 0.1900 -6.2651 45 1 5.5688 1.9127 -7.6689 46 1 2.2264 0.6072 -8.3199 47 1 3.9407 0.3606 -8.7306 48 1 0.9976 2.4258 -9.3550 49 1 2.0797 3.4940 -8.4295 50 1 1.9038 3.7121 -10.1873 51 1 1.9094 0.8590 -10.9101 52 1 3.6660 0.5793 -10.9754 53 1 2.8998 2.4216 -15.2333 54 1 4.4913 2.3001 -2.2756 55 1 2.7874 1.8092 -2.4284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650154783.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:58 Heat of formation + Delta-G solvation = -111.762477 kcal Electronic energy + Delta-G solvation = -29056.779613 eV Core-core repulsion = 25127.604293 eV Total energy + Delta-G solvation = -3929.175319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 329.247 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.49891 -39.50795 -38.57656 -37.38065 -36.11491 -34.59890 -33.89426 -31.79256 -30.40554 -30.10691 -29.03952 -27.13253 -27.09072 -25.22584 -24.90527 -23.01662 -22.58713 -22.28139 -21.71856 -20.80714 -19.02982 -17.70294 -17.51575 -17.18168 -17.14527 -16.63015 -16.42535 -16.08425 -15.97301 -15.87383 -15.74091 -15.59780 -15.20600 -15.04746 -14.65249 -14.55467 -14.17656 -14.15492 -13.82520 -13.64739 -13.51998 -13.27568 -13.13059 -12.85937 -12.72141 -12.54132 -12.51611 -12.39486 -12.31513 -12.21918 -12.02829 -11.91612 -11.79482 -11.61366 -11.52526 -11.49319 -11.34795 -10.78543 -10.70725 -10.51426 -9.34638 -9.18409 -8.96807 -8.27953 -6.31612 1.34165 1.36099 1.46643 2.34185 2.65041 2.96716 3.04393 3.09655 3.45236 3.70272 3.82706 3.86337 3.96919 4.07450 4.12160 4.15914 4.23761 4.27361 4.31947 4.42118 4.44779 4.47070 4.50163 4.54627 4.58043 4.62129 4.64145 4.66246 4.68190 4.74734 4.76816 4.83846 4.86172 4.89504 4.90131 4.96594 5.01299 5.02161 5.08393 5.11227 5.21261 5.28809 5.36644 5.52655 5.96679 6.01624 6.10973 6.22258 6.35176 6.37525 6.46490 6.66483 6.75005 6.97887 7.31794 8.88818 Molecular weight = 329.25amu Principal moments of inertia in cm(-1) A = 0.018504 B = 0.001984 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.842778 B =14109.564135 C =14640.184174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.063 3.937 4 C 0.058 3.942 5 N -0.542 5.542 6 C 0.057 3.943 7 C -0.109 4.109 8 C -0.145 4.145 9 C 0.098 3.902 10 H 0.071 0.929 11 N -0.685 5.685 12 C 0.044 3.956 13 C 0.126 3.874 14 H 0.092 0.908 15 O -0.561 6.561 16 C 0.022 3.978 17 N -0.539 5.539 18 C 0.042 3.958 19 C 0.172 3.828 20 C -0.516 4.516 21 H 0.035 0.965 22 C 0.004 3.996 23 N -0.949 5.949 24 Si 0.951 3.049 25 H -0.263 1.263 26 H -0.251 1.251 27 H -0.282 1.282 28 C 0.074 3.926 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.348 0.652 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.379 0.621 46 H 0.040 0.960 47 H 0.078 0.922 48 H 0.018 0.982 49 H 0.075 0.925 50 H 0.044 0.956 51 H -0.014 1.014 52 H 0.030 0.970 53 H 0.267 0.733 54 H 0.031 0.969 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 -8.293 34.052 35.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.014 4.014 4 C -0.070 4.070 5 N -0.268 5.268 6 C -0.071 4.071 7 C -0.148 4.148 8 C -0.184 4.184 9 C -0.013 4.013 10 H 0.090 0.910 11 N -0.316 5.316 12 C -0.086 4.086 13 C 0.066 3.934 14 H 0.110 0.890 15 O -0.367 6.367 16 C -0.107 4.107 17 N -0.262 5.262 18 C -0.106 4.106 19 C 0.044 3.956 20 C -0.555 4.555 21 H 0.053 0.947 22 C -0.193 4.193 23 N -0.590 5.590 24 Si 0.774 3.226 25 H -0.188 1.188 26 H -0.175 1.175 27 H -0.208 1.208 28 C -0.054 4.054 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.167 0.833 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.227 0.773 46 H 0.058 0.942 47 H 0.097 0.903 48 H 0.037 0.963 49 H 0.094 0.906 50 H 0.063 0.937 51 H 0.004 0.996 52 H 0.048 0.952 53 H 0.076 0.924 54 H 0.049 0.951 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.993 -7.898 34.013 34.933 hybrid contribution 0.446 -0.729 -1.046 1.351 sum 1.439 -8.627 32.967 34.108 Atomic orbital electron populations 1.22835 0.80517 1.03284 1.00298 1.87934 1.20305 1.28334 1.95419 1.22648 0.93517 0.84743 1.00445 1.22147 0.93774 0.98668 0.92425 1.61766 1.22456 1.39338 1.03204 1.22123 0.87561 0.98448 0.98935 1.21489 1.01784 0.98131 0.93370 1.22266 0.97186 1.00005 0.98981 1.21454 0.95767 0.94084 0.89954 0.91028 1.60322 1.45162 1.23269 1.02897 1.22484 1.01590 0.95136 0.89437 1.21805 0.86668 0.94360 0.90561 0.89043 1.86583 1.19176 1.38636 1.92299 1.22876 1.00858 0.94904 0.92095 1.61728 1.43826 1.18901 1.01771 1.22184 0.90861 0.96406 1.01153 1.19961 0.94304 0.93528 0.87762 1.21272 1.48245 0.95263 0.90680 0.94696 1.25904 0.94667 1.02915 0.95811 1.70057 1.52233 1.36960 0.99711 0.85665 0.79269 0.79490 0.78179 1.18804 1.17521 1.20779 1.21913 1.00985 0.92980 0.89514 0.93130 0.94246 0.89205 0.91567 0.93677 0.89550 0.92122 0.90055 0.94706 0.91852 0.90220 0.91923 0.91822 0.83293 0.90179 0.93759 0.77294 0.94176 0.90346 0.96337 0.90625 0.93714 0.99624 0.95221 0.92438 0.95073 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.59 16 2 O -0.40 -7.29 10.64 -148.98 -1.58 -8.88 16 3 C 0.06 0.88 6.08 71.98 0.44 1.32 16 4 C 0.06 0.75 5.37 86.30 0.46 1.21 16 5 N -0.54 -8.54 4.55 -896.36 -4.08 -12.62 16 6 C 0.06 0.75 5.45 86.32 0.47 1.22 16 7 C -0.11 -1.43 6.09 30.65 0.19 -1.24 16 8 C -0.15 -2.11 5.26 30.68 0.16 -1.95 16 9 C 0.10 1.68 2.63 44.97 0.12 1.80 16 10 H 0.07 1.44 7.80 -2.39 -0.02 1.42 16 11 N -0.69 -13.08 6.25 -491.29 -3.07 -16.15 16 12 C 0.04 0.87 5.16 86.30 0.45 1.31 16 13 C 0.13 3.24 3.08 30.59 0.09 3.33 16 14 H 0.09 2.60 6.47 -2.39 -0.02 2.58 16 15 O -0.56 -15.66 12.72 -148.98 -1.90 -17.56 16 16 C 0.02 0.66 4.62 86.30 0.40 1.06 16 17 N -0.54 -22.40 4.62 -927.05 -4.28 -26.69 16 18 C 0.04 1.68 9.16 127.69 1.17 2.85 16 19 C 0.17 8.30 3.79 85.56 0.32 8.62 16 20 C -0.52 -30.49 9.07 25.60 0.23 -30.26 16 21 H 0.03 2.32 7.35 -2.91 -0.02 2.30 16 22 C 0.00 0.24 5.47 84.66 0.46 0.70 16 23 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 24 Si 0.95 44.28 27.47 68.60 1.88 46.16 16 25 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 26 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 28 C 0.07 1.25 4.91 86.33 0.42 1.68 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.67 6.51 -2.39 -0.02 0.66 16 34 H 0.09 1.04 7.87 -2.39 -0.02 1.02 16 35 H 0.06 0.65 8.06 -2.39 -0.02 0.63 16 36 H 0.08 0.96 7.96 -2.39 -0.02 0.94 16 37 H 0.03 0.43 8.14 -2.39 -0.02 0.42 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.93 7.53 -2.39 -0.02 0.91 16 41 H 0.06 0.91 8.10 -2.39 -0.02 0.90 16 42 H 0.35 6.72 8.01 -89.69 -0.72 6.00 16 43 H 0.08 1.59 8.06 -2.39 -0.02 1.57 16 44 H 0.04 0.79 7.49 -2.38 -0.02 0.77 16 45 H 0.38 8.34 9.04 -74.06 -0.67 7.67 16 46 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 47 H 0.08 2.25 7.93 -2.39 -0.02 2.23 16 48 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.08 2.59 6.30 -2.39 -0.02 2.58 16 50 H 0.04 2.05 6.86 -2.39 -0.02 2.03 16 51 H -0.01 -0.67 7.18 -2.39 -0.02 -0.69 16 52 H 0.03 1.39 7.36 -2.39 -0.02 1.37 16 53 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 54 H 0.03 0.52 8.14 -2.39 -0.02 0.51 16 55 H 0.07 1.33 6.42 -2.39 -0.02 1.31 16 Total: -1.00 -70.86 420.10 -6.68 -77.54 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -0.59 Total: 24.84 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 6.64 Total: -6.77 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -11.13 Total: -115.34 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -3.48 Total: -26.43 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -70.86 -6.68 -77.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650154783.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.224 kcal (2) G-P(sol) polarization free energy of solvation -70.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds