Wall clock time and date at job start Tue Mar 31 2020 04:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47227 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00041 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99993 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00038 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47272 * 180.02562 * 8 7 5 10 10 H 1.09001 * 109.50450 * 304.91627 * 9 8 7 11 11 C 1.53095 * 109.50560 * 184.78756 * 9 8 7 12 12 N 1.47019 * 109.25717 * 183.21637 * 11 9 8 13 13 C 1.46898 * 111.00267 * 182.39201 * 12 11 9 14 14 C 1.50699 * 109.47417 * 170.32112 * 13 12 11 15 15 O 1.21290 * 119.99799 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00124 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99720 * 179.97438 * 16 14 13 18 18 H 1.07993 * 120.00008 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99532 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99859 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00047 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47516 * 89.99831 * 21 19 17 23 23 H 1.48507 * 109.47002 * 209.99889 * 21 19 17 24 24 H 1.48503 * 109.47191 * 329.98963 * 21 19 17 25 25 C 1.47016 * 110.75201 * 58.61189 * 12 11 9 26 26 C 1.53091 * 109.25939 * 301.38583 * 25 12 11 27 27 O 1.43009 * 109.50711 * 65.00096 * 9 8 7 28 28 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 29 29 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 31 31 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 32 32 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 33 33 H 1.09000 * 109.46916 * 299.99948 * 4 3 2 34 34 H 1.09003 * 109.47336 * 59.99762 * 4 3 2 35 35 H 0.96997 * 120.00106 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.47504 * 300.00636 * 8 7 5 37 37 H 1.09004 * 109.46777 * 60.01000 * 8 7 5 38 38 H 1.08996 * 109.50752 * 303.15101 * 11 9 8 39 39 H 1.09003 * 109.51028 * 63.28411 * 11 9 8 40 40 H 1.09008 * 109.47043 * 290.32170 * 13 12 11 41 41 H 1.09004 * 109.47263 * 50.31793 * 13 12 11 42 42 H 0.96999 * 119.99653 * 359.97438 * 16 14 13 43 43 H 0.96993 * 120.00088 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.50321 * 181.44850 * 25 12 11 45 45 H 1.09007 * 109.50400 * 61.32375 * 25 12 11 46 46 H 1.08999 * 109.50922 * 296.91347 * 26 25 12 47 47 H 1.08998 * 109.54275 * 176.80399 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1484 2.5613 0.0000 6 8 3.4356 3.5425 -0.0004 7 7 5.4888 2.7022 0.0009 8 6 6.0847 4.0405 -0.0002 9 6 7.6099 3.9197 0.0005 10 1 7.9259 3.3057 0.8438 11 6 8.2330 5.3131 0.1197 12 7 9.6966 5.1980 0.0424 13 6 10.3374 6.5091 0.2098 14 6 11.8253 6.3253 0.3629 15 8 12.3047 5.2114 0.3359 16 7 12.6232 7.3984 0.5311 17 6 13.9767 7.2310 0.6709 18 1 14.4035 6.2393 0.6468 19 6 14.7994 8.3375 0.8437 20 7 16.0967 8.1770 0.9783 21 14 14.0610 10.0528 0.8861 22 1 13.7099 10.4062 2.2850 23 1 15.0487 11.0300 0.3617 24 1 12.8375 10.0860 0.0451 25 6 10.1036 4.5703 -1.2232 26 6 9.4618 3.1844 -1.3289 27 8 8.0415 3.3128 -1.2204 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 1.6887 1.8463 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 3.8567 0.6439 0.8909 34 1 3.8575 0.6435 -0.8891 35 1 6.0589 1.9175 0.0016 36 1 5.7637 4.5804 -0.8911 37 1 5.7624 4.5825 0.8889 38 1 7.8740 5.9432 -0.6940 39 1 7.9528 5.7566 1.0752 40 1 10.1358 7.1265 -0.6657 41 1 9.9383 6.9979 1.0986 42 1 12.2397 8.2891 0.5531 43 1 16.6709 8.9493 1.0993 44 1 11.1889 4.4717 -1.2480 45 1 9.7745 5.1886 -2.0584 46 1 9.8323 2.5494 -0.5242 47 1 9.7144 2.7380 -2.2906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666677425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:31 Heat of formation + Delta-G solvation = -149.868038 kcal Electronic energy + Delta-G solvation = -27730.031945 eV Core-core repulsion = 23527.538056 eV Total energy + Delta-G solvation = -4202.493889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.32113 -39.66579 -38.33451 -38.08807 -35.62483 -35.01374 -33.93197 -32.53399 -31.73546 -31.41906 -29.24152 -27.52693 -26.67808 -25.21130 -23.83846 -23.73960 -22.33140 -20.95053 -20.19608 -19.43010 -18.35849 -17.78096 -16.93026 -16.73494 -16.46400 -16.28810 -16.03305 -15.83741 -15.29561 -15.20402 -15.17483 -15.02839 -14.57843 -14.12143 -13.94837 -13.73410 -13.60989 -13.50640 -13.15448 -12.80357 -12.55976 -12.40000 -12.24004 -11.97566 -11.85807 -11.83152 -11.60777 -11.37414 -11.33261 -11.06310 -10.63856 -10.61545 -10.24817 -10.10865 -10.02769 -9.77770 -9.58503 -9.40023 -8.64436 -8.23945 -8.10193 -6.35737 -3.87426 2.30306 2.61592 2.98903 3.03512 3.12055 3.44902 3.56548 3.66161 3.76820 4.06164 4.34984 4.59392 4.60415 4.64078 4.70678 4.78918 4.91884 4.93101 4.95688 5.07610 5.09282 5.16022 5.24071 5.24743 5.28603 5.35406 5.39735 5.43270 5.44850 5.53404 5.61353 5.68173 5.74640 5.85282 6.00835 6.06648 6.19245 6.68114 6.96844 6.97539 7.13306 7.16746 7.53037 7.86926 8.09081 8.54730 8.89969 9.37192 9.76955 10.77219 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.038144 B = 0.001735 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.884765 B =16136.699059 C =16597.804182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.140 4.140 5 C 0.518 3.482 6 O -0.546 6.546 7 N -0.721 5.721 8 C 0.129 3.871 9 C 0.084 3.916 10 H 0.076 0.924 11 C 0.026 3.974 12 N -0.512 5.512 13 C 0.043 3.957 14 C 0.452 3.548 15 O -0.561 6.561 16 N -0.589 5.589 17 C -0.306 4.306 18 H 0.120 0.880 19 C 0.043 3.957 20 N -0.880 5.880 21 Si 0.879 3.121 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.270 1.270 25 C 0.013 3.987 26 C 0.068 3.932 27 O -0.385 6.385 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.407 0.593 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.370 0.630 43 H 0.274 0.726 44 H 0.116 0.884 45 H 0.034 0.966 46 H 0.063 0.937 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.523 -10.652 -2.697 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.180 4.180 5 C 0.305 3.695 6 O -0.423 6.423 7 N -0.372 5.372 8 C 0.005 3.995 9 C 0.025 3.975 10 H 0.094 0.906 11 C -0.104 4.104 12 N -0.237 5.237 13 C -0.088 4.088 14 C 0.238 3.762 15 O -0.443 6.443 16 N -0.228 5.228 17 C -0.435 4.435 18 H 0.138 0.862 19 C -0.160 4.160 20 N -0.520 5.520 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.196 1.196 25 C -0.115 4.115 26 C -0.008 4.008 27 O -0.304 6.304 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.242 0.758 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.134 0.866 45 H 0.052 0.948 46 H 0.081 0.919 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -26.326 -11.121 -2.444 28.683 hybrid contribution -0.260 2.089 -0.404 2.144 sum -26.586 -9.032 -2.848 28.222 Atomic orbital electron populations 1.22742 0.80508 1.02801 1.00255 1.87801 1.20141 1.27999 1.95581 1.22160 0.91873 0.84242 1.01824 1.21466 0.95516 0.95116 1.05925 1.20377 0.82211 0.91117 0.75835 1.90724 1.61008 1.40831 1.49781 1.45844 1.06598 1.09596 1.75204 1.21358 0.90263 0.84520 1.03322 1.22304 0.92525 0.94112 0.88517 0.90606 1.22678 0.88896 0.96507 1.02271 1.61773 1.04864 1.21769 1.35319 1.21907 0.95055 0.90141 1.01707 1.19580 0.87039 0.85447 0.84176 1.90515 1.75627 1.23938 1.54226 1.42211 1.07996 1.06768 1.65843 1.19424 0.79554 0.97406 1.47086 0.86232 1.25037 0.95252 0.98251 0.97507 1.69617 1.02912 1.31203 1.48229 0.86677 0.79217 0.84609 0.78910 1.19564 1.20143 1.19552 1.22994 1.04198 0.95190 0.89126 1.22687 0.79357 0.96322 1.02438 1.87948 1.22981 1.81108 1.38360 0.93909 0.89489 0.93906 0.92349 0.92350 0.87851 0.87814 0.75839 0.90514 0.89703 0.93804 0.89428 0.93134 0.88996 0.79687 0.91560 0.86634 0.94827 0.91866 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.40 -3.35 10.70 -35.23 -0.38 -3.73 16 3 C 0.08 0.61 5.23 37.16 0.19 0.81 16 4 C -0.14 -0.96 6.07 -27.88 -0.17 -1.13 16 5 C 0.52 4.90 7.83 -10.99 -0.09 4.81 16 6 O -0.55 -7.17 15.98 5.56 0.09 -7.08 16 7 N -0.72 -5.98 5.50 -60.29 -0.33 -6.31 16 8 C 0.13 1.20 5.34 -4.04 -0.02 1.18 16 9 C 0.08 0.86 2.84 -26.68 -0.08 0.79 16 10 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 11 C 0.03 0.29 4.93 -3.71 -0.02 0.28 16 12 N -0.51 -7.76 4.47 -235.75 -1.05 -8.81 16 13 C 0.04 0.70 5.45 -4.98 -0.03 0.67 16 14 C 0.45 9.87 7.49 -10.98 -0.08 9.79 16 15 O -0.56 -14.30 13.90 5.55 0.08 -14.23 16 16 N -0.59 -13.64 5.09 -10.96 -0.06 -13.70 16 17 C -0.31 -8.46 10.16 -14.93 -0.15 -8.62 16 18 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 19 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -25.31 13.96 55.50 0.77 -24.53 16 21 Si 0.88 19.02 27.74 -169.99 -4.71 14.31 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 25 C 0.01 0.19 5.29 -3.71 -0.02 0.17 16 26 C 0.07 0.84 7.01 37.20 0.26 1.10 16 27 O -0.38 -4.50 10.42 -35.23 -0.37 -4.87 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.41 2.63 8.47 -40.82 -0.35 2.29 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.05 0.73 8.12 -51.92 -0.42 0.31 16 41 H 0.09 1.27 8.04 -51.93 -0.42 0.86 16 42 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.12 2.10 5.85 -51.93 -0.30 1.80 16 45 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -34.40 386.57 -6.93 -41.33 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -7.61 Total: 9.58 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 0.82 Total: 12.20 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.67 Total: -53.35 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.58 Total: -29.90 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.40 -6.93 -41.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666677425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.538 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds