Wall clock time and date at job start Tue Mar 31 2020 04:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00101 * 2 1 4 4 C 1.52998 * 109.47242 * 180.02562 * 3 2 1 5 5 C 1.50705 * 109.47183 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99574 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99918 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99729 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46726 * 180.02562 * 8 7 5 10 10 H 1.09001 * 109.50680 * 60.09397 * 9 8 7 11 11 C 1.53099 * 109.50098 * 180.21852 * 9 8 7 12 12 N 1.47015 * 109.25443 * 176.78610 * 11 9 8 13 13 C 1.46900 * 111.00153 * 177.61022 * 12 11 9 14 14 C 1.50703 * 109.47413 * 189.99664 * 13 12 11 15 15 O 1.21295 * 119.99766 * 6.27562 * 14 13 12 16 16 N 1.34771 * 120.00129 * 186.27949 * 14 13 12 17 17 C 1.37096 * 120.00193 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99757 * 359.97438 * 17 16 14 19 19 C 1.38948 * 120.00160 * 179.97438 * 17 16 14 20 20 N 1.31406 * 120.00121 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99905 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47190 * 89.99620 * 21 19 17 23 23 H 1.48501 * 109.47398 * 209.99942 * 21 19 17 24 24 H 1.48505 * 109.47265 * 329.99857 * 21 19 17 25 25 C 1.47019 * 110.75301 * 301.38326 * 12 11 9 26 26 C 1.53099 * 109.25812 * 58.61714 * 25 12 11 27 27 O 1.43007 * 109.50606 * 300.00187 * 9 8 7 28 28 H 1.09001 * 109.46711 * 299.99752 * 1 2 3 29 29 H 1.08998 * 109.46921 * 59.99928 * 1 2 3 30 30 H 1.09002 * 109.46805 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47348 * 60.00061 * 3 2 1 32 32 H 1.08993 * 109.47011 * 300.00383 * 3 2 1 33 33 H 1.09000 * 109.47025 * 59.99709 * 4 3 2 34 34 H 1.09006 * 109.47274 * 299.99847 * 4 3 2 35 35 H 0.96999 * 120.00125 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.47282 * 60.00509 * 8 7 5 37 37 H 1.08998 * 109.47062 * 300.00288 * 8 7 5 38 38 H 1.08999 * 109.50796 * 296.71561 * 11 9 8 39 39 H 1.08999 * 109.50681 * 56.85391 * 11 9 8 40 40 H 1.08999 * 109.46934 * 309.99264 * 13 12 11 41 41 H 1.09002 * 109.47422 * 69.99685 * 13 12 11 42 42 H 0.97004 * 119.99847 * 359.97438 * 16 14 13 43 43 H 0.97001 * 119.99780 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.50605 * 298.68314 * 25 12 11 45 45 H 1.08996 * 109.50936 * 178.55142 * 25 12 11 46 46 H 1.08996 * 109.50444 * 183.22216 * 26 25 12 47 47 H 1.08998 * 109.50587 * 63.08212 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1485 2.5614 0.0000 6 8 3.4356 3.5425 0.0004 7 7 5.4889 2.7022 0.0001 8 6 6.0847 4.0406 0.0002 9 6 7.6099 3.9197 -0.0004 10 1 7.9320 3.3805 -0.8912 11 6 8.2334 5.3180 0.0052 12 7 9.6965 5.1961 0.0825 13 6 10.3381 6.5167 0.0332 14 6 11.8263 6.3463 -0.1328 15 8 12.2934 5.2422 -0.3172 16 7 12.6380 7.4206 -0.0762 17 6 13.9917 7.2657 -0.2277 18 1 14.4077 6.2826 -0.3920 19 6 14.8286 8.3734 -0.1700 20 7 14.3224 9.5696 0.0294 21 14 16.6732 8.1622 -0.3757 22 1 17.0277 8.2797 -1.8129 23 1 17.3812 9.2147 0.3965 24 1 17.0772 6.8241 0.1260 25 6 10.0949 4.4617 1.2922 26 6 9.4527 3.0721 1.2737 27 8 8.0331 3.2099 1.1667 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 3.8567 0.6438 -0.8908 34 1 3.8575 0.6436 0.8892 35 1 6.0590 1.9175 -0.0006 36 1 5.7631 4.5815 0.8901 37 1 5.7631 4.5815 -0.8898 38 1 7.9598 5.8422 -0.9105 39 1 7.8686 5.8758 0.8677 40 1 9.9410 7.0823 -0.8097 41 1 10.1351 7.0542 0.9594 42 1 12.2643 8.3036 0.0709 43 1 14.9067 10.3429 0.0693 44 1 9.7598 5.0058 2.1752 45 1 11.1799 4.3609 1.3160 46 1 9.6987 2.5452 2.1956 47 1 9.8289 2.5086 0.4199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666677428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:39 Heat of formation + Delta-G solvation = -157.466090 kcal Electronic energy + Delta-G solvation = -27682.051272 eV Core-core repulsion = 23479.227906 eV Total energy + Delta-G solvation = -4202.823366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.27881 -39.59599 -38.19982 -38.01791 -35.54789 -34.95359 -33.86225 -32.50540 -31.39463 -31.28596 -29.10084 -27.46640 -26.62199 -25.16819 -23.84837 -23.79930 -22.32582 -20.89315 -20.17211 -19.23741 -17.94113 -17.73636 -16.89969 -16.70598 -16.39609 -16.26054 -16.00363 -15.82378 -15.27605 -15.17050 -15.10822 -14.74425 -14.50835 -14.11423 -13.91435 -13.70556 -13.59476 -13.42012 -13.31749 -12.76571 -12.40658 -12.30025 -12.02025 -11.82535 -11.75342 -11.58905 -11.54957 -11.29427 -11.23056 -10.95727 -10.58489 -10.42564 -10.25986 -10.20778 -10.09014 -9.72810 -9.51548 -9.35746 -8.51717 -8.05441 -7.97271 -6.45574 -3.86674 2.33583 2.64705 3.15011 3.24104 3.29291 3.47242 3.61239 3.83133 3.85761 4.18312 4.37910 4.61842 4.65969 4.71638 4.82201 4.92518 4.94696 4.97609 5.00005 5.11558 5.13114 5.20289 5.25933 5.31626 5.33542 5.37678 5.42456 5.49247 5.52104 5.58853 5.73971 5.79290 5.83534 6.05572 6.09691 6.19310 6.22932 6.69938 7.01816 7.08008 7.18349 7.22505 7.51345 7.90566 8.01816 8.57093 9.13872 9.49810 10.01130 10.72031 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.048435 B = 0.001656 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.957143 B =16904.834859 C =17233.121633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.140 4.140 5 C 0.518 3.482 6 O -0.546 6.546 7 N -0.720 5.720 8 C 0.130 3.870 9 C 0.084 3.916 10 H 0.076 0.924 11 C 0.026 3.974 12 N -0.512 5.512 13 C 0.046 3.954 14 C 0.442 3.558 15 O -0.579 6.579 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.016 3.984 26 C 0.069 3.931 27 O -0.385 6.385 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.407 0.593 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.034 0.966 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.130 -13.743 1.198 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.180 4.180 5 C 0.304 3.696 6 O -0.424 6.424 7 N -0.371 5.371 8 C 0.006 3.994 9 C 0.025 3.975 10 H 0.094 0.906 11 C -0.103 4.103 12 N -0.237 5.237 13 C -0.085 4.085 14 C 0.228 3.772 15 O -0.463 6.463 16 N -0.199 5.199 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.112 4.112 26 C -0.008 4.008 27 O -0.304 6.304 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.242 0.758 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.052 0.948 45 H 0.128 0.872 46 H 0.115 0.885 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.064 -14.084 0.825 26.189 hybrid contribution 0.818 1.152 0.510 1.502 sum -21.246 -12.931 1.335 24.908 Atomic orbital electron populations 1.22741 0.80523 1.02784 1.00257 1.87801 1.20130 1.28022 1.95582 1.22159 0.91885 0.84222 1.01831 1.21464 0.95495 0.95145 1.05899 1.20377 0.82234 0.91101 0.75877 1.90724 1.61002 1.40829 1.49810 1.45821 1.06557 1.09637 1.75128 1.21374 0.90244 0.84520 1.03305 1.22318 0.92562 0.92906 0.89667 0.90639 1.22674 0.88995 0.96474 1.02202 1.61776 1.04942 1.17808 1.39132 1.21883 0.95289 0.89817 1.01505 1.19687 0.87087 0.85670 0.84795 1.90496 1.76406 1.25064 1.54307 1.41874 1.07004 1.08153 1.62890 1.19698 0.81284 0.95666 1.46348 0.87883 1.25263 1.00736 0.94638 0.97215 1.69610 1.36522 0.98532 1.49534 0.85856 0.81955 0.78128 0.78338 1.20373 1.20923 1.19418 1.22904 1.03689 0.94488 0.90088 1.22683 0.79442 0.96258 1.02388 1.87932 1.23041 1.75969 1.43478 0.93912 0.93905 0.89505 0.92343 0.92348 0.87881 0.87833 0.75795 0.90571 0.89714 0.89433 0.93832 0.89078 0.93338 0.77481 0.91830 0.94796 0.87249 0.88469 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.40 -3.42 10.70 -35.23 -0.38 -3.80 16 3 C 0.08 0.63 5.23 37.16 0.19 0.82 16 4 C -0.14 -1.00 6.07 -27.88 -0.17 -1.17 16 5 C 0.52 5.05 7.83 -10.98 -0.09 4.97 16 6 O -0.55 -7.34 15.98 5.56 0.09 -7.25 16 7 N -0.72 -6.24 5.45 -60.29 -0.33 -6.57 16 8 C 0.13 1.26 5.37 -4.04 -0.02 1.23 16 9 C 0.08 0.90 2.89 -26.68 -0.08 0.83 16 10 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 11 C 0.03 0.31 4.93 -3.71 -0.02 0.30 16 12 N -0.51 -8.14 4.42 -235.74 -1.04 -9.18 16 13 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 14 C 0.44 10.12 7.35 -10.99 -0.08 10.04 16 15 O -0.58 -15.06 14.25 5.54 0.08 -14.98 16 16 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 17 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 18 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 21 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 C 0.02 0.25 5.30 -3.71 -0.02 0.23 16 26 C 0.07 0.86 7.01 37.21 0.26 1.13 16 27 O -0.39 -4.61 10.22 -35.23 -0.36 -4.97 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.41 2.81 8.35 -40.82 -0.34 2.47 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.41 8.04 -51.93 -0.42 1.00 16 41 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 42 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.11 2.03 6.10 -51.93 -0.32 1.71 16 46 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 389.81 15.07 5.87 5.87 Total: -1.00 -33.23 389.81 -7.26 -40.49 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.66 Total: 9.50 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 0.83 Total: 12.62 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.70 Total: -53.19 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.57 Total: -31.00 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.23 -7.26 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666677428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.973 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds