Wall clock time and date at job start Tue Mar 31 2020 06:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35983 * 116.99858 * 2 1 4 4 C 1.38717 * 120.00100 * 0.02562 * 3 2 1 5 5 C 1.38114 * 120.00146 * 179.97438 * 4 3 2 6 6 C 1.38718 * 119.99628 * 0.02562 * 5 4 3 7 7 O 1.35983 * 119.99674 * 179.97438 * 6 5 4 8 8 C 1.38672 * 120.00148 * 0.02562 * 6 5 4 9 9 S 1.76199 * 119.99967 * 179.97438 * 8 6 5 10 10 O 1.42105 * 106.40374 * 311.18880 * 9 8 6 11 11 O 1.42102 * 106.40677 * 178.26855 * 9 8 6 12 12 N 1.65601 * 107.22072 * 64.72510 * 9 8 6 13 13 C 1.46499 * 119.99592 * 63.81832 * 12 9 8 14 14 C 1.50703 * 109.46903 * 163.23618 * 13 12 9 15 15 O 1.21283 * 120.00050 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99822 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99915 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.99943 * 0.02562 * 17 16 14 19 19 C 1.38954 * 120.00118 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99694 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00067 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46812 * 60.00254 * 21 19 17 23 23 H 1.48495 * 109.47047 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47182 * 300.00280 * 21 19 17 25 25 C 1.38158 * 120.00152 * 0.23245 * 8 6 5 26 26 H 1.09006 * 109.47146 * 59.99822 * 1 2 3 27 27 H 1.08997 * 109.46872 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46905 * 299.99704 * 1 2 3 29 29 H 1.08004 * 120.00239 * 359.97436 * 4 3 2 30 30 H 1.07997 * 119.99677 * 179.97438 * 5 4 3 31 31 H 0.96701 * 114.00035 * 265.40575 * 7 6 5 32 32 H 0.96991 * 120.00049 * 243.82058 * 12 9 8 33 33 H 1.09003 * 109.47421 * 283.23638 * 13 12 9 34 34 H 1.08997 * 109.47269 * 43.23672 * 13 12 9 35 35 H 0.97004 * 120.00064 * 0.02562 * 16 14 13 36 36 H 0.97003 * 120.00042 * 180.02562 * 20 19 17 37 37 H 1.08001 * 119.99619 * 179.72326 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9178 3.6056 0.0011 6 6 3.3031 3.6782 0.0005 7 8 3.9204 4.8898 0.0005 8 6 4.0584 2.5152 -0.0011 9 16 5.8179 2.6074 -0.0024 10 8 6.1709 3.5258 -1.0278 11 8 6.2901 1.2677 0.0372 12 7 6.2734 3.3063 1.4281 13 6 5.9915 2.6293 2.6964 14 6 6.8398 3.2317 3.7867 15 8 7.6048 4.1371 3.5295 16 7 6.7490 2.7637 5.0473 17 6 7.5210 3.3114 6.0391 18 1 8.2016 4.1181 5.8102 19 6 7.4271 2.8293 7.3389 20 7 6.5986 1.8481 7.6174 21 14 8.4795 3.5751 8.6900 22 1 8.1664 5.0209 8.8202 23 1 8.1932 2.8895 9.9758 24 1 9.9150 3.4082 8.3484 25 6 3.4312 1.2842 -0.0070 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2123 2.3185 0.0005 30 1 1.3296 4.5113 0.0011 31 1 4.1617 5.2083 -0.8801 32 1 6.7267 4.1637 1.4263 33 1 4.9377 2.7509 2.9469 34 1 6.2221 1.5683 2.6010 35 1 6.1379 2.0389 5.2528 36 1 6.5327 1.5117 8.5249 37 1 4.0195 0.3785 -0.0128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669081951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:49 Heat of formation + Delta-G solvation = -156.402433 kcal Electronic energy + Delta-G solvation = -25953.588875 eV Core-core repulsion = 21824.179653 eV Total energy + Delta-G solvation = -4129.409222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.64331 -38.86537 -38.39058 -37.19188 -36.12439 -35.80250 -34.60989 -33.66072 -31.78945 -31.31575 -29.69741 -27.49948 -27.11136 -24.30125 -23.65924 -22.77593 -19.81621 -19.57071 -18.79787 -18.47811 -18.09773 -17.51219 -17.04485 -16.39132 -16.17318 -15.83554 -15.70967 -15.46925 -14.78149 -14.61508 -14.41989 -14.27711 -14.19555 -13.62426 -13.40638 -13.03551 -12.80814 -12.47003 -12.28076 -12.05502 -11.95638 -11.88198 -11.85512 -11.67421 -11.50859 -11.39290 -11.08193 -10.64581 -10.47305 -10.26549 -9.80202 -9.58641 -9.34353 -8.54969 -8.48039 -8.05292 -6.47409 -3.88919 0.27150 0.55106 0.90394 2.85860 2.92282 3.11955 3.17293 3.24231 3.28929 3.74654 3.81037 3.82543 4.13517 4.28585 4.42388 4.54048 4.68682 4.75746 4.86396 4.96560 5.07460 5.09615 5.19838 5.43072 5.47745 5.52488 5.75938 5.79902 5.84095 5.88406 6.01910 6.32229 6.91358 7.31247 7.32760 7.50230 7.97738 8.50945 9.09647 9.44079 9.93083 10.69664 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.003318 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.591634 B = 8435.888703 C = 9406.343191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.097 3.903 4 C -0.140 4.140 5 C -0.124 4.124 6 C 0.176 3.824 7 O -0.491 6.491 8 C -0.672 4.672 9 S 2.711 3.289 10 O -0.960 6.960 11 O -0.956 6.956 12 N -1.087 6.087 13 C 0.107 3.893 14 C 0.437 3.563 15 O -0.588 6.588 16 N -0.553 5.553 17 C -0.304 4.304 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.897 5.897 21 Si 0.933 3.067 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.036 4.036 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.406 0.594 32 H 0.429 0.571 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.395 0.605 36 H 0.274 0.726 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.413 -1.794 -15.980 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.052 3.948 4 C -0.159 4.159 5 C -0.143 4.143 6 C 0.129 3.871 7 O -0.304 6.304 8 C -0.757 4.757 9 S 2.797 3.203 10 O -0.950 6.950 11 O -0.946 6.946 12 N -0.852 5.852 13 C -0.024 4.024 14 C 0.221 3.779 15 O -0.473 6.473 16 N -0.189 5.189 17 C -0.433 4.433 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.538 5.538 21 Si 0.760 3.240 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.056 4.056 26 H 0.074 0.926 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.265 0.735 32 H 0.269 0.731 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.229 0.771 36 H 0.084 0.916 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.496 -1.964 -16.004 21.683 hybrid contribution -0.841 0.528 0.756 1.248 sum -15.337 -1.436 -15.248 21.675 Atomic orbital electron populations 1.23123 0.78120 1.04421 1.01371 1.86142 1.21532 1.26037 1.88821 1.19002 0.92288 0.84635 0.98919 1.21425 1.00541 0.91849 1.02057 1.21272 0.93665 0.98208 1.01158 1.17721 0.90370 0.83666 0.95321 1.84857 1.78617 1.31756 1.35179 1.31376 1.28459 0.98100 1.17752 1.01470 0.72984 0.73432 0.72456 1.93556 1.82260 1.64419 1.54757 1.93587 1.77922 1.36686 1.86357 1.54905 1.73795 1.36498 1.19979 1.20944 0.99810 0.97311 0.84308 1.19589 0.87404 0.87135 0.83747 1.90504 1.42157 1.32783 1.81899 1.41803 1.37726 1.33208 1.06157 1.19690 1.19353 1.17377 0.86898 0.87734 1.25298 0.97526 0.96323 0.98570 1.69604 1.36416 1.26021 1.21742 0.85878 0.79963 0.78997 0.79155 1.19841 1.20921 1.19783 1.20122 0.92047 0.97018 0.96369 0.92608 0.87841 0.92382 0.84287 0.84075 0.73483 0.73112 0.90342 0.88676 0.77131 0.91637 0.82469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.13 10.50 -19.69 -0.21 -3.34 16 3 C 0.10 1.06 6.68 -39.24 -0.26 0.80 16 4 C -0.14 -1.26 9.03 -39.45 -0.36 -1.61 16 5 C -0.12 -1.20 9.98 -39.45 -0.39 -1.59 16 6 C 0.18 2.07 6.65 -39.24 -0.26 1.81 16 7 O -0.49 -5.55 12.37 -29.25 -0.36 -5.91 16 8 C -0.67 -8.64 5.87 -39.45 -0.23 -8.87 16 9 S 2.71 40.18 5.31 -107.50 -0.57 39.61 16 10 O -0.96 -15.15 17.11 -62.44 -1.07 -16.22 16 11 O -0.96 -16.20 16.46 -57.17 -0.94 -17.14 16 12 N -1.09 -17.91 5.91 -11.65 -0.07 -17.98 16 13 C 0.11 1.88 6.70 -5.19 -0.03 1.85 16 14 C 0.44 10.16 7.85 -10.98 -0.09 10.07 16 15 O -0.59 -15.50 15.32 5.55 0.09 -15.42 16 16 N -0.55 -13.77 5.29 -10.96 -0.06 -13.83 16 17 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 18 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.90 -23.95 13.05 55.50 0.72 -23.23 16 21 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 25 C -0.04 -0.44 9.48 -39.45 -0.37 -0.81 16 26 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 27 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.14 0.82 6.29 -52.48 -0.33 0.49 16 30 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.41 3.12 8.81 45.56 0.40 3.52 16 32 H 0.43 7.37 7.74 -34.47 -0.27 7.10 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 1.54 7.74 -51.93 -0.40 1.13 16 35 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.16 1.86 7.33 -52.49 -0.38 1.47 16 LS Contribution 340.38 15.07 5.13 5.13 Total: -1.00 -35.28 340.38 -6.49 -41.77 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -2.88 Total: 15.98 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.25 Total: -5.14 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.60 Total: -55.04 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -2.49 Total: -58.02 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 40.18 SS G_CDS: -0.57 Total: 39.61 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.28 -6.49 -41.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669081951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.629 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds