Wall clock time and date at job start Tue Mar 31 2020 04:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 114.00225 * 2 1 4 4 C 1.50700 * 109.47013 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00288 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99729 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99690 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47048 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.46988 * 179.97438 * 8 7 6 10 10 O 1.21273 * 120.00259 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99654 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99714 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47004 * 180.02562 * 12 11 9 14 14 O 1.42904 * 110.64058 * 298.31066 * 13 12 11 15 15 C 1.55156 * 110.72286 * 174.97843 * 13 12 11 16 16 C 1.54903 * 101.58351 * 206.13369 * 15 13 12 17 17 N 1.47421 * 104.83315 * 37.00756 * 16 15 13 18 18 C 1.36939 * 125.64858 * 155.85141 * 17 16 15 19 19 H 1.07996 * 119.99982 * 353.90110 * 18 17 16 20 20 C 1.38817 * 119.99954 * 173.89711 * 18 17 16 21 21 N 1.31613 * 119.99986 * 6.83731 * 20 18 17 22 22 Si 1.86797 * 119.99814 * 186.83100 * 20 18 17 23 23 H 1.48505 * 109.47109 * 94.99070 * 22 20 18 24 24 H 1.48503 * 109.46980 * 214.98572 * 22 20 18 25 25 H 1.48496 * 109.47373 * 334.98809 * 22 20 18 26 26 C 1.47020 * 108.70220 * 335.86868 * 17 16 15 27 27 H 1.09007 * 109.46580 * 59.99873 * 1 2 3 28 28 H 1.08998 * 109.47623 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47016 * 300.00400 * 1 2 3 30 30 H 1.09004 * 109.47313 * 59.99716 * 3 2 1 31 31 H 1.08995 * 109.47053 * 299.99947 * 3 2 1 32 32 H 0.97002 * 120.00489 * 359.97438 * 6 4 3 33 33 H 1.09006 * 109.46812 * 59.99921 * 7 6 4 34 34 H 1.08995 * 109.47361 * 299.99659 * 7 6 4 35 35 H 1.09006 * 109.46841 * 60.00597 * 8 7 6 36 36 H 1.08995 * 109.47299 * 300.00356 * 8 7 6 37 37 H 0.97002 * 120.00465 * 0.02562 * 11 9 8 38 38 H 1.09004 * 109.47159 * 60.00196 * 12 11 9 39 39 H 1.08995 * 109.47361 * 300.00333 * 12 11 9 40 40 H 0.96699 * 113.99785 * 61.68887 * 14 13 12 41 41 H 1.09001 * 111.00881 * 88.05545 * 15 13 12 42 42 H 1.09003 * 111.00263 * 324.20864 * 15 13 12 43 43 H 1.09002 * 110.36741 * 278.16597 * 16 15 13 44 44 H 1.09003 * 110.36584 * 155.84338 * 16 15 13 45 45 H 0.97001 * 120.00020 * 179.97438 * 21 20 18 46 46 H 1.09006 * 109.87818 * 120.47590 * 26 17 16 47 47 H 1.08994 * 109.88526 * 241.48611 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 8 4.0342 0.0914 0.0015 6 7 4.2766 2.2966 0.0013 7 6 5.7371 2.1809 0.0025 8 6 6.3594 3.5785 0.0023 9 6 7.8617 3.4594 0.0042 10 8 8.3832 2.3646 0.0050 11 7 8.6257 4.5698 0.0039 12 6 10.0861 4.4540 0.0051 13 6 10.7085 5.8517 0.0051 14 8 10.3350 6.5694 -1.1728 15 6 12.2523 5.7652 0.1334 16 6 12.5875 7.1313 0.7823 17 7 11.4794 7.3852 1.7209 18 6 11.5394 8.1896 2.8276 19 1 12.4812 8.6237 3.1292 20 6 10.3897 8.4470 3.5616 21 7 9.2714 7.8142 3.2766 22 14 10.4297 9.6915 4.9541 23 1 9.9776 11.0132 4.4499 24 1 9.5275 9.2429 6.0450 25 1 11.8157 9.8079 5.4743 26 6 10.2995 6.6316 1.2723 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8463 -0.8899 32 1 3.8595 3.1724 0.0009 33 1 6.0593 1.6399 -0.8873 34 1 6.0580 1.6400 0.8927 35 1 6.0372 4.1198 0.8919 36 1 6.0385 4.1191 -0.8881 37 1 8.2086 5.4456 0.0028 38 1 10.4085 3.9124 -0.8842 39 1 10.4071 3.9138 0.8957 40 1 9.3830 6.7159 -1.2588 41 1 12.7213 5.6724 -0.8462 42 1 12.5447 4.9412 0.7844 43 1 12.6280 7.9122 0.0229 44 1 13.5342 7.0739 1.3196 45 1 8.4681 7.9938 3.7897 46 1 9.9861 5.9358 2.0508 47 1 9.4863 7.3194 1.0408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671998695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:41 Heat of formation + Delta-G solvation = -139.130838 kcal Electronic energy + Delta-G solvation = -28053.833907 eV Core-core repulsion = 23851.805618 eV Total energy + Delta-G solvation = -4202.028290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.19144 -39.71651 -38.46863 -37.78642 -35.39703 -35.09064 -34.05103 -32.29800 -31.63110 -29.69520 -28.98133 -27.94353 -26.43328 -25.79296 -24.15760 -22.97352 -21.08912 -20.72283 -19.98912 -19.82962 -17.90861 -17.38847 -17.13778 -16.79259 -16.74898 -16.39624 -16.00990 -15.57044 -15.41645 -14.93869 -14.74811 -14.49157 -14.21860 -13.99384 -13.74937 -13.56123 -13.29996 -13.07990 -12.88927 -12.63127 -12.29480 -12.15995 -12.08188 -11.88638 -11.64877 -11.62092 -11.25361 -10.89632 -10.70757 -10.51707 -10.34197 -10.23724 -10.11544 -10.09221 -9.86287 -9.73938 -9.36657 -9.34433 -8.94287 -8.70753 -6.92449 -5.83995 -3.14391 2.34851 2.41971 2.67308 3.25650 3.34103 3.40076 3.41237 3.72998 4.33540 4.40841 4.52356 4.55436 4.66079 4.71041 4.79159 4.85182 4.88976 4.93879 4.98597 5.24604 5.25032 5.28825 5.42288 5.44188 5.57867 5.67672 5.80405 5.86687 5.95489 6.08954 6.12579 6.25401 6.39049 6.50361 6.53793 6.59817 6.86073 7.16610 7.23215 7.36450 7.53097 7.65663 7.94625 8.01666 8.13273 8.25940 9.11057 9.71939 10.38066 11.29085 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.002200 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.436541 B =12723.937727 C =14245.110085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.515 6.515 6 N -0.731 5.731 7 C 0.137 3.863 8 C -0.155 4.155 9 C 0.519 3.481 10 O -0.542 6.542 11 N -0.719 5.719 12 C 0.109 3.891 13 C 0.085 3.915 14 O -0.550 6.550 15 C -0.115 4.115 16 C 0.136 3.864 17 N -0.604 5.604 18 C -0.225 4.225 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.925 5.925 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.163 3.837 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.401 0.599 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.403 0.597 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.367 0.633 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.026 0.974 44 H 0.041 0.959 45 H 0.251 0.749 46 H 0.052 0.948 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 -7.214 -9.227 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.037 4.037 4 C 0.296 3.704 5 O -0.389 6.389 6 N -0.386 5.386 7 C 0.013 3.987 8 C -0.195 4.195 9 C 0.304 3.696 10 O -0.419 6.419 11 N -0.371 5.371 12 C -0.015 4.015 13 C 0.044 3.956 14 O -0.355 6.355 15 C -0.154 4.154 16 C 0.010 3.990 17 N -0.330 5.330 18 C -0.353 4.353 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.573 5.573 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.038 3.962 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.235 0.765 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.238 0.762 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.214 0.786 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.043 0.957 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.377 -8.930 -9.143 18.501 hybrid contribution -1.344 1.953 0.934 2.548 sum -14.721 -6.977 -8.208 18.242 Atomic orbital electron populations 1.22853 0.80253 1.03423 1.00165 1.88029 1.19872 1.25151 1.95428 1.22237 0.91559 0.87121 1.02736 1.20234 0.88661 0.84587 0.76918 1.90771 1.74558 1.26447 1.47088 1.45861 1.07285 1.08774 1.76640 1.21047 0.77582 0.95758 1.04305 1.21806 0.93235 0.98990 1.05478 1.20204 0.88802 0.84377 0.76214 1.90736 1.75077 1.26505 1.49620 1.45902 1.07358 1.09009 1.74863 1.21965 0.78985 0.97925 1.02600 1.22921 0.96081 0.89236 0.87394 1.86520 1.27900 1.77801 1.43321 1.22708 0.92160 0.99723 1.00781 1.21566 0.92201 0.93066 0.92201 1.44374 1.07483 1.54321 1.26858 1.19115 0.94539 1.20544 1.01126 0.90240 1.24795 0.95650 1.00140 0.99925 1.69914 1.00545 1.43967 1.42831 0.86080 0.77301 0.81105 0.81204 1.21631 1.21795 1.20606 1.21784 0.90354 0.93667 0.90414 0.93764 0.89026 0.93711 0.90067 0.90140 0.76502 0.90383 0.90258 0.87703 0.88125 0.76250 0.91213 0.90465 0.78617 0.90890 0.90190 0.95654 0.94043 0.93842 0.92984 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.76 10.24 -55.14 -0.56 -4.32 16 3 C 0.04 0.32 6.42 36.01 0.23 0.55 16 4 C 0.51 5.61 7.91 -10.99 -0.09 5.53 16 5 O -0.51 -8.47 16.50 -14.35 -0.24 -8.71 16 6 N -0.73 -6.01 5.56 -60.29 -0.33 -6.35 16 7 C 0.14 1.46 4.96 -4.04 -0.02 1.44 16 8 C -0.15 -1.36 5.81 -27.88 -0.16 -1.52 16 9 C 0.52 6.94 7.83 -10.98 -0.09 6.86 16 10 O -0.54 -9.45 15.98 5.56 0.09 -9.36 16 11 N -0.72 -9.48 5.17 -60.29 -0.31 -9.80 16 12 C 0.11 1.68 4.73 -4.04 -0.02 1.66 16 13 C 0.09 1.46 0.92 -88.79 -0.08 1.38 16 14 O -0.55 -8.97 13.10 -35.23 -0.46 -9.43 16 15 C -0.11 -1.96 6.26 -24.59 -0.15 -2.12 16 16 C 0.14 2.77 7.23 -2.53 -0.02 2.75 16 17 N -0.60 -14.83 3.39 -170.08 -0.58 -15.41 16 18 C -0.23 -6.09 10.26 -15.06 -0.15 -6.24 16 19 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 20 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 21 N -0.92 -25.39 10.36 55.49 0.57 -24.81 16 22 Si 0.91 21.43 29.56 -169.99 -5.02 16.41 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.16 3.57 4.16 -3.07 -0.01 3.56 16 27 H 0.04 0.18 8.14 -51.92 -0.42 -0.24 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.40 1.75 8.47 -40.82 -0.35 1.41 16 33 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.40 4.64 7.38 -40.82 -0.30 4.34 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.31 8.13 -51.93 -0.42 0.88 16 40 H 0.37 4.68 8.12 45.56 0.37 5.05 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 46 H 0.05 1.28 7.23 -51.93 -0.38 0.90 16 47 H 0.05 1.17 7.28 -51.93 -0.38 0.79 16 LS Contribution 390.72 15.07 5.89 5.89 Total: -1.00 -37.36 390.72 -7.41 -44.78 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.91 Total: 6.34 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 0.45 Total: 14.78 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.65 Total: -56.37 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.17 Total: -31.82 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.36 -7.41 -44.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671998695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.353 kcal (2) G-P(sol) polarization free energy of solvation -37.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds