Wall clock time and date at job start Tue Mar 31 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99825 * 2 1 4 4 C 1.50702 * 109.47084 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99992 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00493 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00379 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47216 * 180.02562 * 7 6 4 9 9 C 1.50699 * 109.46986 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00355 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99754 * 179.97438 * 9 8 7 12 12 C 1.46504 * 120.00032 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47366 * 179.97438 * 12 11 9 14 14 O 1.42902 * 110.91248 * 67.44937 * 13 12 11 15 15 C 1.55157 * 111.00550 * 191.35254 * 13 12 11 16 16 C 1.54341 * 103.01863 * 153.38237 * 15 13 12 17 17 N 1.47021 * 107.26762 * 338.14177 * 16 15 13 18 18 C 1.36935 * 125.65016 * 178.84916 * 17 16 15 19 19 H 1.07998 * 120.00411 * 186.33390 * 18 17 16 20 20 C 1.38820 * 119.99637 * 6.33959 * 18 17 16 21 21 N 1.31616 * 120.00167 * 7.37467 * 20 18 17 22 22 Si 1.86795 * 119.99594 * 187.37489 * 20 18 17 23 23 H 1.48500 * 109.47142 * 84.98874 * 22 20 18 24 24 H 1.48507 * 109.47095 * 204.98970 * 22 20 18 25 25 H 1.48507 * 109.47311 * 324.98671 * 22 20 18 26 26 C 1.47429 * 108.69986 * 358.58344 * 17 16 15 27 27 H 1.09003 * 109.46861 * 300.00351 * 1 2 3 28 28 H 1.09000 * 109.46714 * 59.99753 * 1 2 3 29 29 H 1.08996 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47662 * 59.99883 * 3 2 1 31 31 H 1.09001 * 109.46947 * 299.99461 * 3 2 1 32 32 H 0.96999 * 119.99458 * 359.97438 * 6 4 3 33 33 H 1.08996 * 109.47647 * 59.99292 * 7 6 4 34 34 H 1.09007 * 109.47113 * 299.99546 * 7 6 4 35 35 H 1.09003 * 109.47012 * 59.99845 * 8 7 6 36 36 H 1.08996 * 109.47066 * 299.99744 * 8 7 6 37 37 H 0.96998 * 120.00687 * 359.97438 * 11 9 8 38 38 H 1.09003 * 109.46834 * 60.00534 * 12 11 9 39 39 H 1.08996 * 109.47267 * 300.00419 * 12 11 9 40 40 H 0.96692 * 114.00161 * 297.55125 * 14 13 12 41 41 H 1.08998 * 110.71666 * 271.93919 * 15 13 12 42 42 H 1.08992 * 110.72162 * 35.03836 * 15 13 12 43 43 H 1.09000 * 109.98819 * 218.66184 * 16 15 13 44 44 H 1.09001 * 109.77537 * 97.49905 * 16 15 13 45 45 H 0.97001 * 119.99943 * 180.02562 * 21 20 18 46 46 H 1.09004 * 110.36159 * 143.19555 * 26 17 16 47 47 H 1.08994 * 110.37061 * 265.51431 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2765 2.2968 -0.0013 7 6 5.7369 2.1811 -0.0025 8 6 6.3592 3.5789 -0.0023 9 6 7.8615 3.4598 -0.0029 10 8 8.3831 2.3649 -0.0029 11 7 8.6254 4.5701 -0.0034 12 6 10.0859 4.4545 -0.0034 13 6 10.7083 5.8522 -0.0047 14 8 10.4482 6.5275 1.2275 15 6 12.2318 5.7823 -0.2899 16 6 12.5309 7.1588 -0.9207 17 7 11.2628 7.6807 -1.4509 18 6 11.0943 8.8901 -2.0706 19 1 10.1032 9.2283 -2.3346 20 6 12.1976 9.6816 -2.3595 21 7 13.4124 9.2110 -2.1721 22 14 11.9580 11.4145 -3.0143 23 1 11.7623 12.3504 -1.8780 24 1 13.1577 11.8211 -3.7895 25 1 10.7636 11.4499 -3.8960 26 6 10.2039 6.6834 -1.2107 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8594 3.1725 -0.0017 33 1 6.0579 1.6401 -0.8926 34 1 6.0593 1.6403 0.8874 35 1 6.0383 4.1194 0.8882 36 1 6.0370 4.1201 -0.8918 37 1 8.2084 5.4459 -0.0038 38 1 10.4075 3.9132 -0.8933 39 1 10.4076 3.9139 0.8867 40 1 9.5095 6.6815 1.4011 41 1 12.7917 5.6499 0.6359 42 1 12.4562 4.9801 -0.9928 43 1 13.2536 7.0490 -1.7292 44 1 12.9216 7.8357 -0.1609 45 1 14.1833 9.7642 -2.3736 46 1 9.2650 7.1791 -0.9636 47 1 10.0782 6.0453 -2.0853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671998696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:47 Heat of formation + Delta-G solvation = -137.635182 kcal Electronic energy + Delta-G solvation = -27703.190948 eV Core-core repulsion = 23501.227515 eV Total energy + Delta-G solvation = -4201.963433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.33891 -39.86257 -38.55061 -37.88009 -35.52107 -35.11401 -34.25384 -32.20836 -31.72946 -29.76271 -29.18733 -28.13053 -26.47943 -25.76236 -24.20615 -23.06501 -21.22408 -20.81435 -20.11449 -19.86265 -17.99738 -17.48764 -17.16312 -16.94985 -16.85379 -16.36822 -16.17401 -15.70178 -15.41783 -15.08468 -14.82363 -14.73578 -14.47431 -14.03209 -13.89162 -13.58714 -13.39392 -13.30733 -12.91176 -12.75187 -12.33037 -12.26045 -11.99238 -11.96585 -11.80180 -11.76542 -11.04080 -10.91202 -10.76635 -10.41645 -10.34710 -10.32079 -10.20462 -10.17726 -9.91134 -9.77441 -9.49282 -9.46177 -9.17276 -8.64801 -6.87566 -5.75525 -3.11547 2.23744 2.29269 2.46500 3.06221 3.36358 3.40745 3.43223 3.61959 4.19836 4.40176 4.42062 4.44339 4.55752 4.60743 4.61289 4.67487 4.81379 4.85630 4.86217 5.04750 5.08273 5.18436 5.30486 5.46585 5.51201 5.60991 5.65698 5.79499 5.91412 5.96061 6.12134 6.25076 6.28625 6.38024 6.45081 6.48687 6.56199 7.03844 7.30535 7.46678 7.60331 7.76414 7.83027 7.93172 8.04860 8.20818 9.14838 9.75837 10.41129 11.34633 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021450 B = 0.001823 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.062486 B =15359.543921 C =16312.196492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.513 6.513 6 N -0.732 5.732 7 C 0.136 3.864 8 C -0.154 4.154 9 C 0.517 3.483 10 O -0.537 6.537 11 N -0.725 5.725 12 C 0.104 3.896 13 C 0.101 3.899 14 O -0.538 6.538 15 C -0.127 4.127 16 C 0.176 3.824 17 N -0.597 5.597 18 C -0.233 4.233 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.917 5.917 22 Si 0.913 3.087 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.117 3.883 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.401 0.599 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.400 0.600 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.364 0.636 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.035 0.965 45 H 0.253 0.747 46 H 0.037 0.963 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.035 -10.979 6.013 26.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.296 3.704 5 O -0.387 6.387 6 N -0.387 5.387 7 C 0.012 3.988 8 C -0.195 4.195 9 C 0.302 3.698 10 O -0.414 6.414 11 N -0.377 5.377 12 C -0.020 4.020 13 C 0.059 3.941 14 O -0.342 6.342 15 C -0.165 4.165 16 C 0.052 3.948 17 N -0.323 5.323 18 C -0.361 4.361 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.564 5.564 22 Si 0.743 3.257 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.208 1.208 26 C -0.010 4.010 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.235 0.765 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.235 0.765 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.210 0.790 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -21.328 -12.612 5.962 25.485 hybrid contribution -1.320 2.232 -0.411 2.626 sum -22.648 -10.380 5.551 25.524 Atomic orbital electron populations 1.22858 0.80176 1.03485 1.00180 1.88031 1.19936 1.25085 1.95428 1.22231 0.91482 0.87191 1.02737 1.20253 0.88697 0.84563 0.76884 1.90779 1.74546 1.26434 1.46935 1.45848 1.07209 1.08787 1.76822 1.21045 0.77688 0.95626 1.04408 1.21813 0.93143 0.99153 1.05383 1.20253 0.88824 0.84421 0.76305 1.90760 1.75028 1.26456 1.49117 1.46005 1.07517 1.08886 1.75323 1.22064 0.78604 0.98196 1.03146 1.22713 0.97670 0.88532 0.85209 1.86633 1.28916 1.79868 1.38757 1.22893 0.91482 1.01333 1.00839 1.21198 0.88793 0.88221 0.96613 1.44331 1.03560 1.16280 1.68079 1.18989 0.93025 0.92445 1.31668 0.90588 1.24818 0.95224 0.98971 1.01246 1.69943 0.96921 1.35735 1.53781 0.86137 0.76906 0.84347 0.78311 1.21536 1.21646 1.20765 1.22116 0.93028 0.91716 0.94119 0.93728 0.93701 0.88980 0.90109 0.90088 0.76541 0.90248 0.90296 0.88016 0.87903 0.76523 0.90307 0.90664 0.79016 0.90961 0.90784 0.92055 0.94711 0.93632 0.94497 0.95602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.37 -3.39 10.24 -55.14 -0.56 -3.96 16 3 C 0.04 0.27 6.42 36.01 0.23 0.50 16 4 C 0.51 4.92 7.91 -10.98 -0.09 4.83 16 5 O -0.51 -7.81 16.50 -14.36 -0.24 -8.05 16 6 N -0.73 -4.81 5.56 -60.29 -0.33 -5.15 16 7 C 0.14 1.20 4.96 -4.04 -0.02 1.18 16 8 C -0.15 -0.99 5.81 -27.88 -0.16 -1.16 16 9 C 0.52 5.68 7.83 -10.99 -0.09 5.59 16 10 O -0.54 -8.30 15.98 5.56 0.09 -8.22 16 11 N -0.73 -7.59 5.19 -60.29 -0.31 -7.90 16 12 C 0.10 1.39 4.97 -4.04 -0.02 1.37 16 13 C 0.10 1.62 0.95 -88.47 -0.08 1.53 16 14 O -0.54 -8.67 13.18 -35.23 -0.46 -9.14 16 15 C -0.13 -2.32 6.16 -24.89 -0.15 -2.47 16 16 C 0.18 4.22 5.43 -3.06 -0.02 4.21 16 17 N -0.60 -14.68 3.39 -170.06 -0.58 -15.26 16 18 C -0.23 -6.32 10.26 -15.06 -0.15 -6.48 16 19 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 20 C -0.01 -0.16 5.45 -17.43 -0.09 -0.25 16 21 N -0.92 -26.64 10.48 55.49 0.58 -26.06 16 22 Si 0.91 21.68 29.56 -169.99 -5.02 16.65 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.12 2.19 5.74 -2.53 -0.01 2.17 16 27 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.40 1.05 8.47 -40.82 -0.35 0.71 16 33 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 34 H 0.08 0.86 8.10 -51.92 -0.42 0.44 16 35 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.40 3.26 7.31 -40.82 -0.30 2.96 16 38 H 0.08 1.12 8.00 -51.93 -0.42 0.71 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.36 4.26 8.58 45.56 0.39 4.65 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.06 1.63 6.99 -51.93 -0.36 1.27 16 44 H 0.03 0.93 7.91 -51.93 -0.41 0.52 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.04 0.62 7.80 -51.93 -0.41 0.22 16 47 H 0.03 0.49 8.04 -51.93 -0.42 0.08 16 LS Contribution 390.97 15.07 5.89 5.89 Total: -1.00 -38.81 390.97 -7.37 -46.18 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.87 Total: 2.70 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 0.45 Total: 12.29 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.64 Total: -54.36 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.18 Total: -29.36 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.81 -7.37 -46.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671998696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.451 kcal (2) G-P(sol) polarization free energy of solvation -38.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds