Wall clock time and date at job start Tue Mar 31 2020 04:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47304 * 2 1 4 4 C 1.42896 * 113.99957 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46866 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00543 * 359.97438 * 5 4 3 7 7 N 1.34784 * 120.00193 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00198 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47059 * 184.98597 * 8 7 5 10 10 H 1.09000 * 109.54320 * 185.82694 * 9 8 7 11 11 C 1.53095 * 109.50964 * 65.71301 * 9 8 7 12 12 O 1.43010 * 109.26203 * 183.21453 * 11 9 8 13 13 C 1.43020 * 113.73498 * 58.67292 * 12 11 9 14 14 C 1.53097 * 109.26054 * 301.33062 * 13 12 11 15 15 N 1.47009 * 109.25785 * 56.84535 * 14 13 12 16 16 C 1.46903 * 111.00095 * 177.60920 * 15 14 13 17 17 C 1.50703 * 109.47022 * 287.57155 * 16 15 14 18 18 O 1.21295 * 119.99759 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99931 * 179.72595 * 17 16 15 20 20 C 1.37093 * 120.00006 * 180.27520 * 19 17 16 21 21 H 1.08006 * 120.00278 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00022 * 179.97438 * 20 19 17 23 23 N 1.31406 * 119.99947 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00114 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47152 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47473 * 120.00009 * 24 22 20 27 27 H 1.48500 * 109.47114 * 240.00476 * 24 22 20 28 28 H 1.09005 * 109.47433 * 59.99521 * 1 2 3 29 29 H 1.09004 * 109.47520 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47384 * 299.99792 * 1 2 3 31 31 H 1.09007 * 109.46769 * 240.00496 * 2 1 3 32 32 H 1.08995 * 109.47598 * 120.00540 * 2 1 3 33 33 H 1.09002 * 109.47230 * 60.01083 * 4 3 2 34 34 H 1.09000 * 109.47401 * 300.00112 * 4 3 2 35 35 H 0.97002 * 119.99440 * 359.97438 * 7 5 4 36 36 H 1.08999 * 109.47110 * 64.98726 * 8 7 5 37 37 H 1.08998 * 109.47060 * 304.98087 * 8 7 5 38 38 H 1.08994 * 109.51027 * 303.15527 * 11 9 8 39 39 H 1.09009 * 109.50435 * 63.24209 * 11 9 8 40 40 H 1.09000 * 109.50678 * 61.26986 * 13 12 11 41 41 H 1.09003 * 109.50851 * 181.34895 * 13 12 11 42 42 H 1.09008 * 109.50504 * 296.91489 * 14 13 12 43 43 H 1.09001 * 109.50953 * 176.78511 * 14 13 12 44 44 H 1.09000 * 109.47020 * 167.57501 * 16 15 14 45 45 H 1.08994 * 109.47002 * 47.57216 * 16 15 14 46 46 H 0.97003 * 119.99510 * 0.27149 * 19 17 16 47 47 H 0.97004 * 120.00266 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 0.0006 5 6 3.8194 2.9161 0.0012 6 8 2.9610 3.7729 0.0006 7 7 5.1209 3.2663 0.0013 8 6 5.4987 4.6817 0.0012 9 6 7.0186 4.8039 -0.1240 10 1 7.3101 5.8491 -0.0204 11 6 7.4623 4.2827 -1.4934 12 8 8.8892 4.3295 -1.5763 13 6 9.5500 3.5641 -0.5648 14 6 9.1275 4.0779 0.8141 15 7 7.6637 4.0076 0.9301 16 6 7.2198 4.4395 2.2622 17 6 7.5723 3.3820 3.2765 18 8 8.1374 2.3682 2.9241 19 7 7.2643 3.5651 4.5757 20 6 7.5901 2.6057 5.4992 21 1 8.0940 1.7033 5.1857 22 6 7.2730 2.7947 6.8388 23 7 6.6604 3.8929 7.2203 24 14 7.7175 1.4878 8.0973 25 1 8.3972 0.3562 7.4168 26 1 8.6273 2.0706 9.1160 27 1 6.4820 0.9977 8.7594 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8340 0.9765 -0.8893 34 1 3.8332 0.9766 0.8908 35 1 5.8075 2.5810 0.0013 36 1 5.1725 5.1448 0.9325 37 1 5.0232 5.1847 -0.8408 38 1 7.1239 3.2542 -1.6185 39 1 7.0310 4.9057 -2.2771 40 1 9.2724 2.5146 -0.6629 41 1 10.6293 3.6670 -0.6773 42 1 9.4527 5.1116 0.9327 43 1 9.5841 3.4610 1.5881 44 1 6.1402 4.5898 2.2544 45 1 7.7149 5.3743 2.5248 46 1 6.8122 4.3758 4.8573 47 1 6.4394 4.0250 8.1556 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673028391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:36 Heat of formation + Delta-G solvation = -148.871841 kcal Electronic energy + Delta-G solvation = -29363.058101 eV Core-core repulsion = 25160.607410 eV Total energy + Delta-G solvation = -4202.450691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.31904 -39.35316 -38.03985 -37.67829 -35.93451 -34.43984 -33.76952 -31.86030 -31.34180 -31.27751 -29.13994 -28.13706 -26.04899 -25.52631 -23.84071 -22.94445 -22.56270 -20.82979 -19.90255 -19.22783 -17.93199 -17.31541 -17.05021 -16.79990 -16.44560 -16.21821 -15.89191 -15.62281 -15.08668 -14.87799 -14.73075 -14.65602 -14.18503 -14.11964 -13.80396 -13.52427 -13.46320 -13.31578 -12.87667 -12.64598 -12.56991 -12.30574 -12.03147 -11.72562 -11.57194 -11.52380 -11.41083 -11.37494 -11.19466 -10.90164 -10.53622 -10.38632 -10.27333 -9.82120 -9.77408 -9.72012 -9.54342 -8.97569 -8.59616 -8.09144 -7.99898 -6.46014 -3.87309 2.66368 2.80270 3.12578 3.23607 3.29663 3.64045 3.79901 3.84399 3.97191 4.16826 4.60423 4.63028 4.79759 4.86186 4.93310 4.99665 5.00803 5.09518 5.17132 5.18781 5.18962 5.19627 5.28094 5.36838 5.46698 5.49185 5.56783 5.63237 5.72622 5.73721 5.73909 5.87827 5.95136 6.00822 6.09479 6.19970 6.42807 6.92310 7.00682 7.01057 7.15041 7.50606 7.58090 8.00876 8.28218 8.55918 9.13105 9.49246 9.99953 10.71611 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.007018 B = 0.004231 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3988.917877 B = 6616.747994 C = 9682.903273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.044 3.956 5 C 0.515 3.485 6 O -0.528 6.528 7 N -0.715 5.715 8 C 0.130 3.870 9 C 0.031 3.969 10 H 0.066 0.934 11 C 0.073 3.927 12 O -0.387 6.387 13 C 0.065 3.935 14 C 0.022 3.978 15 N -0.507 5.507 16 C 0.038 3.962 17 C 0.445 3.555 18 O -0.580 6.580 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.900 5.900 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.412 0.588 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.036 0.964 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.051 0.949 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 -1.863 -16.239 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C -0.036 4.036 5 C 0.300 3.700 6 O -0.404 6.404 7 N -0.370 5.370 8 C 0.005 3.995 9 C -0.078 4.078 10 H 0.083 0.917 11 C -0.004 4.004 12 O -0.306 6.306 13 C -0.012 4.012 14 C -0.106 4.106 15 N -0.233 5.233 16 C -0.093 4.093 17 C 0.230 3.770 18 O -0.464 6.464 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.541 5.541 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.054 0.946 43 H 0.125 0.875 44 H 0.111 0.889 45 H 0.069 0.931 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.397 -2.093 -16.484 16.960 hybrid contribution 0.534 0.104 1.440 1.539 sum -2.863 -1.990 -15.044 15.442 Atomic orbital electron populations 1.21725 0.93495 1.02149 1.03396 1.22544 0.95884 0.83449 1.00299 1.87999 1.18594 1.26314 1.95470 1.22175 0.83823 0.94708 1.02874 1.20201 0.82633 0.90566 0.76599 1.90716 1.49508 1.51752 1.48381 1.45741 1.07038 1.08809 1.75415 1.21338 0.92728 0.82609 1.02784 1.22662 0.93869 0.97378 0.93904 0.91654 1.22632 0.81516 1.01277 0.95000 1.87962 1.18239 1.71856 1.52533 1.22702 0.97055 0.95358 0.86068 1.22860 0.87866 1.00464 0.99400 1.61778 1.06724 1.53245 1.01574 1.22004 1.01607 0.96911 0.88773 1.19633 0.85468 0.88807 0.83058 1.90491 1.46360 1.30018 1.79528 1.41877 1.52303 1.20387 1.05360 1.19721 1.35859 1.00411 0.86934 0.87858 1.25267 0.96899 0.97598 0.98113 1.69617 1.40781 1.25753 1.17915 0.85815 0.78180 0.80396 0.80032 1.19235 1.20749 1.20721 0.91833 0.91042 0.91619 0.93290 0.92969 0.90411 0.89780 0.75127 0.90914 0.90428 0.92281 0.88503 0.91973 0.88595 0.94617 0.87470 0.88931 0.93095 0.77537 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.15 0.38 -0.95 16 2 C 0.05 0.55 6.66 37.15 0.25 0.80 16 3 O -0.37 -5.07 9.88 -55.14 -0.54 -5.61 16 4 C 0.04 0.53 6.42 36.01 0.23 0.76 16 5 C 0.51 7.46 7.91 -10.98 -0.09 7.38 16 6 O -0.53 -9.76 16.50 -14.35 -0.24 -10.00 16 7 N -0.71 -8.94 5.05 -60.30 -0.30 -9.24 16 8 C 0.13 1.54 4.72 -4.04 -0.02 1.52 16 9 C 0.03 0.36 2.25 -67.60 -0.15 0.21 16 10 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 11 C 0.07 0.77 6.21 37.21 0.23 1.00 16 12 O -0.39 -4.80 10.83 -35.23 -0.38 -5.18 16 13 C 0.06 0.79 7.01 37.21 0.26 1.05 16 14 C 0.02 0.31 5.31 -3.71 -0.02 0.29 16 15 N -0.51 -7.32 3.49 -227.77 -0.79 -8.11 16 16 C 0.04 0.63 5.30 -4.97 -0.03 0.61 16 17 C 0.45 9.84 7.51 -10.98 -0.08 9.76 16 18 O -0.58 -14.36 14.44 5.54 0.08 -14.28 16 19 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 20 C -0.30 -8.11 9.68 -14.94 -0.14 -8.26 16 21 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 24 Si 0.93 20.67 29.55 -169.99 -5.02 15.64 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.41 4.94 7.43 -40.82 -0.30 4.64 16 36 H 0.07 0.96 6.38 -51.93 -0.33 0.63 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.61 7.28 -51.93 -0.38 0.23 16 39 H 0.10 0.85 8.14 -51.92 -0.42 0.42 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 43 H 0.11 1.83 6.44 -51.93 -0.33 1.50 16 44 H 0.09 1.48 5.65 -51.93 -0.29 1.19 16 45 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 46 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -33.23 384.56 -7.41 -40.63 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -7.39 Total: 13.04 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: 0.72 Total: 14.69 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.43 Total: -54.72 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -1.08 Total: -35.07 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.23 -7.41 -40.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673028391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.237 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds