Wall clock time and date at job start Tue Mar 31 2020 04:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.46952 * 2 1 4 4 C 1.42902 * 113.99770 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46951 * 180.02562 * 4 3 2 6 6 O 1.21273 * 119.99967 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99820 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99813 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47282 * 175.59719 * 8 7 5 10 10 H 1.09002 * 109.50608 * 173.87092 * 9 8 7 11 11 C 1.53096 * 109.50606 * 293.96134 * 9 8 7 12 12 O 1.43016 * 109.25994 * 176.78333 * 11 9 8 13 13 C 1.43013 * 113.73460 * 301.32662 * 12 11 9 14 14 C 1.53104 * 109.25928 * 58.67351 * 13 12 11 15 15 N 1.47017 * 109.29064 * 303.12770 * 14 13 12 16 16 C 1.46900 * 110.99684 * 182.41358 * 15 14 13 17 17 C 1.50708 * 109.47198 * 75.73195 * 16 15 14 18 18 O 1.21295 * 119.99474 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00051 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99752 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00646 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99696 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00008 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99810 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47075 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.46971 * 120.00389 * 24 22 20 27 27 H 1.48502 * 109.47090 * 240.00109 * 24 22 20 28 28 H 1.09001 * 109.46755 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47149 * 299.99635 * 1 2 3 30 30 H 1.08997 * 109.47450 * 59.99684 * 1 2 3 31 31 H 1.09007 * 109.47162 * 240.00451 * 2 1 3 32 32 H 1.08997 * 109.47450 * 120.00316 * 2 1 3 33 33 H 1.09002 * 109.47074 * 60.00174 * 4 3 2 34 34 H 1.08996 * 109.47375 * 299.99867 * 4 3 2 35 35 H 0.97004 * 120.00551 * 359.97438 * 7 5 4 36 36 H 1.08997 * 109.47790 * 55.59316 * 8 7 5 37 37 H 1.09002 * 109.46847 * 295.59115 * 8 7 5 38 38 H 1.09000 * 109.50293 * 56.84534 * 11 9 8 39 39 H 1.09006 * 109.50581 * 296.71817 * 11 9 8 40 40 H 1.08999 * 109.51274 * 298.73847 * 13 12 11 41 41 H 1.09003 * 109.54188 * 178.62221 * 13 12 11 42 42 H 1.08998 * 109.50544 * 63.07749 * 14 13 12 43 43 H 1.09000 * 109.50450 * 183.16843 * 14 13 12 44 44 H 1.08996 * 109.46665 * 195.72628 * 16 15 14 45 45 H 1.08994 * 109.47364 * 315.73029 * 16 15 14 46 46 H 0.96998 * 120.00184 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99634 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9163 0.0001 6 8 2.9610 3.7729 0.0005 7 7 5.1209 3.2664 -0.0008 8 6 5.4986 4.6818 0.0004 9 6 7.0199 4.8037 0.1098 10 1 7.3100 5.8488 0.0015 11 6 7.4774 4.2849 1.4756 12 8 8.9052 4.3312 1.5436 13 6 9.5551 3.5636 0.5269 14 6 9.1187 4.0751 -0.8486 15 7 7.6537 4.0050 -0.9504 16 6 7.1973 4.4342 -2.2791 17 6 7.4667 3.3405 -3.2804 18 8 7.9881 2.3055 -2.9223 19 7 7.1293 3.5128 -4.5737 20 6 7.3739 2.5177 -5.4844 21 1 7.8374 1.5958 -5.1656 22 6 7.0255 2.6952 -6.8178 23 7 6.4611 3.8167 -7.2058 24 14 7.3595 1.3396 -8.0588 25 1 7.9984 0.1875 -7.3735 26 1 6.0793 0.9036 -8.6721 27 1 8.2669 1.8503 -9.1176 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8332 0.9768 -0.8908 34 1 3.8340 0.9765 0.8891 35 1 5.8075 2.5812 -0.0015 36 1 5.0321 5.1817 0.8493 37 1 5.1624 5.1483 -0.9256 38 1 7.1399 3.2567 1.6060 39 1 7.0550 4.9099 2.2625 40 1 9.2780 2.5144 0.6297 41 1 10.6356 3.6663 0.6273 42 1 9.4430 5.1083 -0.9724 43 1 9.5677 3.4570 -1.6260 44 1 6.1277 4.6413 -2.2464 45 1 7.7333 5.3364 -2.5735 46 1 6.7127 4.3407 -4.8601 47 1 6.2182 3.9407 -8.1366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673028392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:43 Heat of formation + Delta-G solvation = -148.659437 kcal Electronic energy + Delta-G solvation = -29405.770709 eV Core-core repulsion = 25203.329229 eV Total energy + Delta-G solvation = -4202.441481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.31066 -39.33916 -38.02871 -37.66177 -35.93271 -34.42788 -33.76973 -31.85220 -31.33347 -31.27227 -29.14203 -28.12635 -26.04854 -25.52200 -23.83876 -22.92969 -22.56966 -20.81778 -19.89814 -19.22138 -17.92600 -17.30206 -17.03509 -16.79375 -16.42947 -16.22225 -15.89882 -15.62806 -15.08915 -14.86785 -14.72625 -14.64648 -14.17369 -14.11099 -13.79641 -13.52103 -13.45531 -13.31153 -12.86072 -12.63859 -12.55650 -12.29736 -12.05505 -11.71864 -11.56915 -11.50941 -11.41161 -11.36766 -11.18643 -10.89529 -10.54783 -10.38313 -10.26763 -9.80371 -9.76903 -9.71216 -9.54013 -8.96136 -8.60511 -8.08104 -7.99462 -6.45357 -3.86581 2.67998 2.82159 3.12981 3.23907 3.29964 3.63310 3.79221 3.85468 3.98561 4.17347 4.60339 4.63228 4.81261 4.87712 4.93130 5.00322 5.01440 5.11088 5.16491 5.19005 5.20724 5.21834 5.27545 5.35452 5.46667 5.50367 5.56261 5.62871 5.71578 5.73201 5.75315 5.88550 5.96486 5.99403 6.05342 6.20639 6.44155 6.93970 6.99840 7.00675 7.13772 7.51240 7.59847 8.01680 8.29980 8.56843 9.13926 9.50207 10.01028 10.72333 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.006856 B = 0.004387 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4083.067720 B = 6381.664629 C = 9541.821076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.044 3.956 5 C 0.515 3.485 6 O -0.528 6.528 7 N -0.714 5.714 8 C 0.130 3.870 9 C 0.031 3.969 10 H 0.066 0.934 11 C 0.073 3.927 12 O -0.387 6.387 13 C 0.065 3.935 14 C 0.023 3.977 15 N -0.507 5.507 16 C 0.038 3.962 17 C 0.446 3.554 18 O -0.579 6.579 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.900 5.900 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.412 0.588 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.036 0.964 43 H 0.103 0.897 44 H 0.092 0.908 45 H 0.052 0.948 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.256 -1.562 16.215 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C -0.036 4.036 5 C 0.300 3.700 6 O -0.404 6.404 7 N -0.370 5.370 8 C 0.005 3.995 9 C -0.078 4.078 10 H 0.083 0.917 11 C -0.004 4.004 12 O -0.306 6.306 13 C -0.012 4.012 14 C -0.104 4.104 15 N -0.233 5.233 16 C -0.093 4.093 17 C 0.231 3.769 18 O -0.463 6.463 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.541 5.541 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.249 0.751 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.122 0.878 44 H 0.110 0.890 45 H 0.070 0.930 46 H 0.224 0.776 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.755 -1.809 16.466 16.793 hybrid contribution 0.505 0.087 -1.446 1.534 sum -2.250 -1.722 15.021 15.285 Atomic orbital electron populations 1.21723 0.93505 1.02140 1.03391 1.22545 0.95876 0.83459 1.00299 1.88000 1.18605 1.26303 1.95473 1.22176 0.83808 0.94716 1.02880 1.20191 0.82629 0.90564 0.76580 1.90712 1.49502 1.51765 1.48405 1.45730 1.07051 1.08781 1.75404 1.21341 0.92697 0.82662 1.02767 1.22678 0.93925 0.97341 0.93852 0.91650 1.22640 0.81425 1.01314 0.95053 1.87962 1.18388 1.71712 1.52500 1.22699 0.97173 0.95363 0.85963 1.22830 0.87840 1.00409 0.99362 1.61780 1.06590 1.53246 1.01667 1.22013 1.01578 0.96891 0.88853 1.19638 0.85213 0.89040 0.83025 1.90495 1.47676 1.29179 1.78969 1.41875 1.54020 1.18026 1.06095 1.19718 1.37728 0.97665 0.87781 0.87875 1.25266 0.96882 0.97681 0.98058 1.69619 1.41585 1.24863 1.18033 0.85817 0.78050 0.80584 0.79986 1.19246 1.20727 1.20755 0.91049 0.91843 0.91615 0.92962 0.93299 0.89745 0.90440 0.75104 0.90451 0.90907 0.92254 0.88479 0.91941 0.88582 0.94545 0.87833 0.88964 0.93016 0.77557 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.05 0.56 6.66 37.16 0.25 0.81 16 3 O -0.37 -5.16 9.88 -55.14 -0.54 -5.70 16 4 C 0.04 0.54 6.42 36.01 0.23 0.77 16 5 C 0.52 7.59 7.91 -10.98 -0.09 7.50 16 6 O -0.53 -9.87 16.50 -14.35 -0.24 -10.11 16 7 N -0.71 -9.08 5.05 -60.29 -0.30 -9.38 16 8 C 0.13 1.55 4.73 -4.04 -0.02 1.53 16 9 C 0.03 0.36 2.26 -67.55 -0.15 0.21 16 10 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 11 C 0.07 0.77 6.21 37.21 0.23 1.00 16 12 O -0.39 -4.76 10.83 -35.23 -0.38 -5.14 16 13 C 0.06 0.78 7.01 37.21 0.26 1.04 16 14 C 0.02 0.33 5.31 -3.71 -0.02 0.31 16 15 N -0.51 -7.30 3.43 -227.70 -0.78 -8.08 16 16 C 0.04 0.63 5.34 -4.97 -0.03 0.60 16 17 C 0.45 9.87 7.53 -10.98 -0.08 9.79 16 18 O -0.58 -14.38 14.72 5.54 0.08 -14.29 16 19 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 20 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 21 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 24 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.41 5.05 7.43 -40.82 -0.30 4.74 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.97 6.34 -51.93 -0.33 0.64 16 38 H 0.06 0.61 7.29 -51.93 -0.38 0.23 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.04 0.49 8.13 -51.93 -0.42 0.07 16 43 H 0.10 1.73 6.74 -51.93 -0.35 1.38 16 44 H 0.09 1.48 5.56 -51.93 -0.29 1.19 16 45 H 0.05 0.81 7.99 -51.93 -0.41 0.39 16 46 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -33.34 384.98 -7.39 -40.73 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -7.39 Total: 13.12 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 0.72 Total: 14.84 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.42 Total: -54.93 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.08 Total: -35.24 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.34 -7.39 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673028392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.929 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds