Wall clock time and date at job start Tue Mar 31 2020 04:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00487 * 2 1 4 4 C 1.50700 * 109.47202 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00145 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99601 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00059 * 359.97438 * 6 4 3 8 8 C 1.46503 * 119.99615 * 180.02562 * 6 4 3 9 9 C 1.50700 * 109.46803 * 269.99356 * 8 6 4 10 10 O 1.21294 * 119.99956 * 0.02562 * 9 8 6 11 11 N 1.34771 * 120.00192 * 179.97438 * 9 8 6 12 12 C 1.46509 * 120.00099 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46781 * 180.02562 * 12 11 9 14 14 H 1.08991 * 109.71279 * 299.94185 * 13 12 11 15 15 C 1.53296 * 109.67734 * 179.40343 * 13 12 11 16 16 O 1.42964 * 109.22056 * 187.97558 * 15 13 12 17 17 C 1.42966 * 114.16788 * 62.58518 * 16 15 13 18 18 C 1.53291 * 109.22143 * 297.41760 * 17 16 15 19 19 N 1.47154 * 108.38685 * 52.30037 * 18 17 16 20 20 C 1.36941 * 120.98411 * 129.19041 * 19 18 17 21 21 H 1.07998 * 119.99927 * 211.62493 * 20 19 18 22 22 C 1.38813 * 119.99706 * 31.62027 * 20 19 18 23 23 N 1.31612 * 119.99890 * 9.82918 * 22 20 19 24 24 Si 1.86797 * 119.99646 * 189.82423 * 22 20 19 25 25 H 1.48497 * 109.47223 * 0.02562 * 24 22 20 26 26 H 1.48490 * 109.47195 * 120.00431 * 24 22 20 27 27 H 1.48508 * 109.46969 * 240.00051 * 24 22 20 28 28 H 1.09004 * 109.47254 * 300.00028 * 1 2 3 29 29 H 1.09004 * 109.47355 * 59.99748 * 1 2 3 30 30 H 1.08998 * 109.47397 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46811 * 60.00160 * 3 2 1 32 32 H 1.09001 * 109.46675 * 300.00534 * 3 2 1 33 33 H 1.09000 * 109.46781 * 270.00348 * 7 6 4 34 34 H 1.08992 * 109.47407 * 30.00434 * 7 6 4 35 35 H 1.08995 * 109.46775 * 150.00446 * 7 6 4 36 36 H 1.08994 * 109.47168 * 149.99870 * 8 6 4 37 37 H 1.08997 * 109.47460 * 29.99568 * 8 6 4 38 38 H 0.97003 * 120.00056 * 0.02562 * 11 9 8 39 39 H 1.08994 * 109.46923 * 60.00334 * 12 11 9 40 40 H 1.09001 * 109.46896 * 300.00004 * 12 11 9 41 41 H 1.08995 * 109.51152 * 68.05561 * 15 13 12 42 42 H 1.08997 * 109.55656 * 307.92367 * 15 13 12 43 43 H 1.09001 * 109.51259 * 177.49712 * 17 16 15 44 44 H 1.08996 * 109.51102 * 57.34113 * 17 16 15 45 45 H 1.08998 * 109.68519 * 292.57947 * 18 17 16 46 46 H 1.08993 * 109.68572 * 172.02233 * 18 17 16 47 47 H 0.96999 * 119.99805 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 8 4.0341 0.0914 -0.0006 6 7 4.2765 2.2967 -0.0002 7 6 3.6465 3.6193 0.0003 8 6 5.7370 2.1809 -0.0014 9 6 6.2387 2.1401 1.4190 10 8 5.4536 2.2013 2.3415 11 7 7.5597 2.0347 1.6643 12 6 8.0475 1.9945 3.0453 13 6 9.5727 1.8737 3.0441 14 1 9.8686 0.9590 2.5306 15 6 10.0894 1.8462 4.4870 16 8 11.5171 1.9210 4.4772 17 6 12.0361 3.1294 3.9166 18 6 11.6190 3.2227 2.4445 19 7 10.1615 3.0374 2.3623 20 6 9.3755 3.9248 1.6766 21 1 8.3632 4.1132 2.0024 22 6 9.8801 4.5821 0.5630 23 7 11.0356 4.2161 0.0503 24 14 8.9188 5.9860 -0.2079 25 1 7.6609 6.2004 0.5516 26 1 9.7364 7.2250 -0.1704 27 1 8.5953 5.6490 -1.6176 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.4902 3.9476 -1.0273 34 1 2.6869 3.5645 0.5141 35 1 4.2938 4.3298 0.5143 36 1 6.1691 3.0398 -0.5148 37 1 6.0285 1.2655 -0.5162 38 1 8.1876 1.9855 0.9266 39 1 7.6150 1.1356 3.5584 40 1 7.7562 2.9100 3.5602 41 1 9.7768 0.9195 4.9681 42 1 9.6842 2.6962 5.0360 43 1 13.1238 3.1258 3.9873 44 1 11.6378 3.9845 4.4627 45 1 12.1209 2.4437 1.8706 46 1 11.8874 4.2019 2.0482 47 1 11.3880 4.6752 -0.7282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673044614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:45 Heat of formation + Delta-G solvation = -114.637221 kcal Electronic energy + Delta-G solvation = -29727.889080 eV Core-core repulsion = 25526.922914 eV Total energy + Delta-G solvation = -4200.966167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.21397 -39.07464 -38.28116 -37.48494 -35.56938 -35.10498 -33.57231 -31.68963 -30.58822 -29.97955 -28.16082 -27.22297 -26.59412 -25.86525 -24.61590 -23.48845 -21.77558 -20.33508 -19.74499 -19.22455 -17.50599 -17.29684 -16.80031 -16.59480 -16.15083 -16.00497 -15.78787 -15.49591 -14.89946 -14.73676 -14.62608 -14.39384 -14.18076 -13.85385 -13.82173 -13.32943 -13.12652 -13.01378 -12.84862 -12.65317 -12.52304 -12.33823 -12.10841 -11.70192 -11.62626 -11.45435 -11.09885 -10.96765 -10.76651 -10.43075 -10.29247 -10.09657 -10.03090 -9.80000 -9.73388 -9.66335 -9.05109 -8.72772 -8.58526 -8.28271 -6.76561 -5.95626 -3.45939 2.49018 2.67441 3.14596 3.18828 3.29415 3.30135 3.66800 3.92151 4.27639 4.46295 4.52304 4.80329 4.88659 5.02645 5.05933 5.10216 5.12256 5.20619 5.23765 5.33542 5.39483 5.39918 5.57433 5.59374 5.62067 5.71866 5.85235 6.00719 6.08868 6.14120 6.20854 6.27416 6.31956 6.51302 6.74260 6.75264 7.05211 7.09614 7.27691 7.46758 7.64496 7.85301 8.11180 8.21564 8.25473 8.80097 9.00615 9.60903 10.21155 11.10855 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.003415 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.869101 B = 8197.799170 C = 9570.058922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.520 3.480 5 O -0.517 6.517 6 N -0.597 5.597 7 C 0.079 3.921 8 C 0.097 3.903 9 C 0.494 3.506 10 O -0.557 6.557 11 N -0.692 5.692 12 C 0.138 3.862 13 C 0.125 3.875 14 H 0.043 0.957 15 C 0.056 3.944 16 O -0.392 6.392 17 C 0.035 3.965 18 C 0.143 3.857 19 N -0.592 5.592 20 C -0.254 4.254 21 H 0.074 0.926 22 C 0.008 3.992 23 N -0.899 5.899 24 Si 0.895 3.105 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.287 1.287 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.416 0.584 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.040 0.960 45 H 0.030 0.970 46 H 0.093 0.907 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.631 -0.949 -0.697 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.307 3.693 5 O -0.391 6.391 6 N -0.331 5.331 7 C -0.064 4.064 8 C -0.029 4.029 9 C 0.278 3.722 10 O -0.436 6.436 11 N -0.344 5.344 12 C 0.014 3.986 13 C 0.018 3.982 14 H 0.060 0.940 15 C -0.023 4.023 16 O -0.311 6.311 17 C -0.043 4.043 18 C 0.018 3.982 19 N -0.317 5.317 20 C -0.383 4.383 21 H 0.091 0.909 22 C -0.192 4.192 23 N -0.542 5.542 24 Si 0.724 3.276 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.214 1.214 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.254 0.746 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.098 0.902 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.111 0.889 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.594 -1.748 -0.134 13.706 hybrid contribution -0.389 1.517 -0.898 1.805 sum -13.982 -0.231 -1.032 14.022 Atomic orbital electron populations 1.22828 0.80512 1.03252 1.00041 1.88022 1.19659 1.25383 1.95395 1.22253 0.91704 0.86788 1.02445 1.20155 0.88640 0.84135 0.76404 1.90722 1.74416 1.26163 1.47809 1.47267 1.05527 1.06443 1.73878 1.21862 0.98984 0.83907 1.01688 1.21333 0.80161 1.05878 0.95569 1.20880 0.82882 0.76934 0.91468 1.90632 1.55752 1.51261 1.45961 1.45960 1.06648 1.72026 1.09797 1.21134 0.93348 1.00936 0.83204 1.21435 0.91155 0.92345 0.93288 0.93978 1.22862 0.81933 1.00777 0.96728 1.87807 1.20130 1.40557 1.82603 1.23353 0.97588 0.86004 0.97382 1.21424 0.83916 1.02517 0.90342 1.44091 1.02872 1.24247 1.60529 1.19280 0.97311 1.16810 1.04922 0.90879 1.25174 0.97526 1.00109 0.96358 1.69976 1.19442 1.41396 1.23435 0.86341 0.79699 0.82543 0.79010 1.20180 1.21437 1.21394 0.93811 0.93896 0.89132 0.90037 0.90305 0.92136 0.91064 0.90319 0.87104 0.86936 0.74646 0.92397 0.91629 0.89907 0.93552 0.90249 0.94162 0.95232 0.88907 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.37 -4.82 10.24 -55.14 -0.56 -5.39 16 3 C 0.05 0.54 4.97 36.01 0.18 0.72 16 4 C 0.52 8.05 7.75 -10.98 -0.09 7.96 16 5 O -0.52 -10.26 16.08 -14.35 -0.23 -10.50 16 6 N -0.60 -8.36 2.36 -182.96 -0.43 -8.79 16 7 C 0.08 0.79 10.24 59.85 0.61 1.40 16 8 C 0.10 1.48 5.89 -5.19 -0.03 1.45 16 9 C 0.49 9.16 7.90 -10.99 -0.09 9.08 16 10 O -0.56 -11.83 16.43 5.55 0.09 -11.74 16 11 N -0.69 -12.94 3.78 -60.29 -0.23 -13.16 16 12 C 0.14 2.58 4.45 -4.04 -0.02 2.56 16 13 C 0.12 2.44 3.21 -67.42 -0.22 2.22 16 14 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 15 C 0.06 1.00 6.29 37.31 0.23 1.23 16 16 O -0.39 -7.65 10.74 -35.23 -0.38 -8.03 16 17 C 0.03 0.66 6.99 37.31 0.26 0.92 16 18 C 0.14 3.21 5.38 -3.53 -0.02 3.19 16 19 N -0.59 -13.33 3.03 -164.30 -0.50 -13.83 16 20 C -0.25 -6.04 7.04 -15.06 -0.11 -6.14 16 21 H 0.07 1.77 5.82 -52.49 -0.31 1.46 16 22 C 0.01 0.19 5.08 -17.43 -0.09 0.11 16 23 N -0.90 -23.46 11.11 55.49 0.62 -22.84 16 24 Si 0.89 19.48 29.56 -169.99 -5.03 14.45 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.77 7.40 -51.93 -0.38 0.39 16 32 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.57 6.44 -51.93 -0.33 0.23 16 35 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 36 H 0.11 1.49 8.07 -51.93 -0.42 1.07 16 37 H 0.11 1.70 7.42 -51.93 -0.39 1.32 16 38 H 0.42 7.99 7.32 -40.82 -0.30 7.69 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.31 7.56 -51.93 -0.39 0.92 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 2.28 6.32 -51.93 -0.33 1.95 16 47 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 381.23 15.07 5.75 5.75 Total: -1.00 -33.18 381.23 -6.63 -39.81 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.47 Total: 8.21 kcal Atomic # 6 Polarization: 24.30 SS G_CDS: 1.75 Total: 26.05 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.54 Total: -58.62 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.08 Total: -35.65 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.18 -6.63 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673044614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.827 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds