Wall clock time and date at job start Tue Mar 31 2020 04:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00342 * 2 1 4 4 C 1.50694 * 109.47382 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99898 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00039 * 179.97438 * 4 3 2 7 7 C 1.46493 * 120.00113 * 0.02562 * 6 4 3 8 8 C 1.46500 * 120.00047 * 179.97438 * 6 4 3 9 9 C 1.50704 * 109.47235 * 270.00327 * 8 6 4 10 10 O 1.21279 * 120.00156 * 0.02562 * 9 8 6 11 11 N 1.34784 * 119.99887 * 179.97438 * 9 8 6 12 12 C 1.46495 * 119.99640 * 180.02562 * 11 9 8 13 13 C 1.53009 * 109.46760 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.70993 * 60.21656 * 13 12 11 15 15 C 1.53716 * 109.74503 * 180.98775 * 13 12 11 16 16 O 1.42960 * 109.14501 * 172.16322 * 15 13 12 17 17 C 1.42956 * 114.16794 * 297.28805 * 16 15 13 18 18 C 1.53300 * 109.22371 * 62.58084 * 17 16 15 19 19 N 1.47150 * 109.67737 * 299.68094 * 13 12 11 20 20 C 1.36930 * 120.98550 * 9.76342 * 19 13 12 21 21 H 1.07998 * 120.00560 * 328.20965 * 20 19 13 22 22 C 1.38815 * 119.99802 * 148.20399 * 20 19 13 23 23 N 1.31624 * 119.99918 * 165.05191 * 22 20 19 24 24 Si 1.86798 * 120.00393 * 344.77938 * 22 20 19 25 25 H 1.48494 * 109.47283 * 89.81372 * 24 22 20 26 26 H 1.48498 * 109.47264 * 209.81581 * 24 22 20 27 27 H 1.48504 * 109.46761 * 329.81775 * 24 22 20 28 28 H 1.08995 * 109.46993 * 60.00310 * 1 2 3 29 29 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46845 * 299.99755 * 1 2 3 31 31 H 1.09003 * 109.46869 * 59.99740 * 3 2 1 32 32 H 1.09000 * 109.46758 * 300.00386 * 3 2 1 33 33 H 1.09007 * 109.47247 * 269.99380 * 7 6 4 34 34 H 1.09004 * 109.47590 * 29.99221 * 7 6 4 35 35 H 1.08997 * 109.47812 * 149.99596 * 7 6 4 36 36 H 1.08998 * 109.47005 * 150.00407 * 8 6 4 37 37 H 1.08998 * 109.47339 * 30.00177 * 8 6 4 38 38 H 0.96998 * 119.99548 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.47267 * 60.00261 * 12 11 9 40 40 H 1.08999 * 109.47170 * 299.99697 * 12 11 9 41 41 H 1.09001 * 109.65297 * 52.19480 * 15 13 12 42 42 H 1.08998 * 109.43866 * 292.00068 * 15 13 12 43 43 H 1.08997 * 109.51601 * 302.65912 * 17 16 15 44 44 H 1.08999 * 109.55913 * 182.53087 * 17 16 15 45 45 H 1.08995 * 109.68242 * 187.97314 * 18 17 16 46 46 H 1.08998 * 109.71033 * 67.43707 * 18 17 16 47 47 H 0.96994 * 119.99997 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2967 0.0002 7 6 3.6466 3.6193 -0.0003 8 6 5.7369 2.1810 0.0014 9 6 6.2367 2.1425 1.4227 10 8 5.4503 2.2051 2.3439 11 7 7.5575 2.0376 1.6700 12 6 8.0431 1.9996 3.0515 13 6 9.5685 1.8789 3.0527 14 1 10.0056 2.7375 2.5430 15 6 10.0831 1.8136 4.4997 16 8 11.4818 1.5184 4.4870 17 6 11.8067 0.2478 3.9179 18 6 11.3792 0.2299 2.4458 19 7 9.9680 0.6395 2.3674 20 6 9.0547 -0.1076 1.6725 21 1 8.0248 -0.1394 1.9959 22 6 9.4528 -0.8240 0.5521 23 7 8.6716 -1.7615 0.0587 24 14 11.0935 -0.4525 -0.2599 25 1 12.1512 -1.2954 0.3530 26 1 11.0050 -0.7479 -1.7126 27 1 11.4285 0.9811 -0.0657 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.4904 3.9470 -1.0281 34 1 2.6867 3.5649 0.5135 35 1 4.2937 4.3303 0.5133 36 1 6.1698 3.0391 -0.5128 37 1 6.0293 1.2647 -0.5114 38 1 8.1863 1.9872 0.9331 39 1 7.6100 1.1415 3.5655 40 1 7.7512 2.9159 3.5646 41 1 9.5511 1.0328 5.0432 42 1 9.9182 2.7745 4.9871 43 1 11.2810 -0.5387 4.4592 44 1 12.8817 0.0813 3.9868 45 1 11.4923 -0.7765 2.0430 46 1 11.9954 0.9250 1.8756 47 1 8.9499 -2.2623 -0.7239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673044615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:51 Heat of formation + Delta-G solvation = -105.225064 kcal Electronic energy + Delta-G solvation = -29895.559006 eV Core-core repulsion = 25695.000982 eV Total energy + Delta-G solvation = -4200.558025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.06942 -39.12909 -38.37231 -37.35284 -35.56315 -35.07167 -33.59151 -31.76447 -31.09364 -29.91975 -28.09550 -27.44304 -26.50287 -25.80586 -24.60108 -23.39065 -22.20725 -20.27306 -19.90941 -19.11271 -17.37702 -17.18685 -16.67373 -16.58123 -16.10341 -16.05392 -15.85170 -15.47783 -15.08972 -14.81246 -14.63144 -14.40361 -14.25508 -13.95036 -13.92914 -13.42981 -13.13282 -12.87083 -12.73290 -12.57208 -12.49284 -12.24514 -12.20267 -11.85903 -11.68613 -11.52452 -11.34875 -11.12047 -10.76782 -10.53006 -10.31467 -9.89140 -9.82379 -9.67443 -9.60622 -9.54363 -9.29147 -8.68078 -8.46590 -8.25319 -6.97920 -5.97057 -3.44826 2.64966 2.85261 3.21452 3.25352 3.39854 3.42515 3.79002 3.99263 4.30710 4.43910 4.60289 4.68002 4.89309 4.98597 5.09938 5.16889 5.22186 5.24361 5.26345 5.29265 5.44835 5.46806 5.51988 5.56504 5.58383 5.67709 5.80132 5.85040 5.90208 5.91872 6.03037 6.13410 6.23682 6.35947 6.41532 6.52243 6.73808 6.89411 7.12604 7.42570 7.59879 7.85711 8.21147 8.30467 8.38595 8.82854 8.87374 9.62116 9.98800 11.15777 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.015386 B = 0.003496 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.344840 B = 8008.045953 C = 8912.827929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.050 3.950 4 C 0.512 3.488 5 O -0.496 6.496 6 N -0.601 5.601 7 C 0.083 3.917 8 C 0.099 3.901 9 C 0.498 3.502 10 O -0.557 6.557 11 N -0.692 5.692 12 C 0.139 3.861 13 C 0.129 3.871 14 H 0.046 0.954 15 C 0.054 3.946 16 O -0.389 6.389 17 C 0.046 3.954 18 C 0.090 3.910 19 N -0.606 5.606 20 C -0.272 4.272 21 H 0.097 0.903 22 C 0.032 3.968 23 N -0.894 5.894 24 Si 0.881 3.119 25 H -0.288 1.288 26 H -0.303 1.303 27 H -0.270 1.270 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.412 0.588 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.034 0.966 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.836 12.688 -0.322 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.030 4.030 4 C 0.299 3.701 5 O -0.368 6.368 6 N -0.336 5.336 7 C -0.061 4.061 8 C -0.028 4.028 9 C 0.283 3.717 10 O -0.436 6.436 11 N -0.344 5.344 12 C 0.015 3.985 13 C 0.022 3.978 14 H 0.063 0.937 15 C -0.025 4.025 16 O -0.307 6.307 17 C -0.032 4.032 18 C -0.035 4.035 19 N -0.333 5.333 20 C -0.400 4.400 21 H 0.115 0.885 22 C -0.169 4.169 23 N -0.536 5.536 24 Si 0.711 3.289 25 H -0.216 1.216 26 H -0.231 1.231 27 H -0.195 1.195 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.139 0.861 38 H 0.249 0.751 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.052 0.948 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.925 11.927 0.250 14.899 hybrid contribution 0.927 0.103 -0.974 1.348 sum -7.999 12.030 -0.724 14.465 Atomic orbital electron populations 1.22818 0.80668 1.03255 0.99855 1.88062 1.19516 1.25320 1.95337 1.22238 0.91890 0.86783 1.02123 1.20192 0.88584 0.84363 0.77008 1.90852 1.74049 1.25840 1.46056 1.47246 1.05434 1.06228 1.74741 1.21785 0.98874 0.84095 1.01297 1.21304 0.80183 1.05931 0.95349 1.20894 0.82718 0.76535 0.91568 1.90620 1.55502 1.51341 1.46174 1.45888 1.06983 1.72197 1.09353 1.21087 0.92996 1.00836 0.83625 1.21531 0.92906 0.90233 0.93105 0.93663 1.22991 0.82412 1.00489 0.96603 1.87816 1.23710 1.37172 1.82007 1.23068 0.99600 0.85276 0.95287 1.22062 0.86599 1.00052 0.94768 1.44427 1.04909 1.22889 1.61077 1.19019 0.92905 1.22930 1.05182 0.88522 1.25395 0.96943 0.97720 0.96838 1.69818 1.37331 1.21930 1.24479 0.87030 0.84833 0.78867 0.78144 1.21563 1.23142 1.19549 0.93998 0.89139 0.93914 0.90273 0.90514 0.92460 0.91244 0.90780 0.87906 0.86058 0.75074 0.91310 0.92278 0.92915 0.89471 0.93034 0.89793 0.90111 0.94785 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.36 -5.50 10.24 -55.14 -0.56 -6.06 16 3 C 0.05 0.63 4.97 36.00 0.18 0.81 16 4 C 0.51 8.93 7.75 -10.99 -0.09 8.84 16 5 O -0.50 -11.65 16.08 -14.35 -0.23 -11.88 16 6 N -0.60 -8.79 2.36 -182.96 -0.43 -9.22 16 7 C 0.08 0.76 10.24 59.84 0.61 1.38 16 8 C 0.10 1.57 5.89 -5.19 -0.03 1.54 16 9 C 0.50 9.49 7.90 -10.98 -0.09 9.40 16 10 O -0.56 -12.13 16.43 5.56 0.09 -12.04 16 11 N -0.69 -13.00 3.77 -60.29 -0.23 -13.23 16 12 C 0.14 2.55 4.46 -4.04 -0.02 2.53 16 13 C 0.13 2.37 3.23 -67.20 -0.22 2.16 16 14 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 15 C 0.05 0.89 6.31 37.53 0.24 1.13 16 16 O -0.39 -6.99 10.74 -35.23 -0.38 -7.37 16 17 C 0.05 0.82 6.98 37.31 0.26 1.08 16 18 C 0.09 1.89 4.37 -3.53 -0.02 1.87 16 19 N -0.61 -13.38 2.77 -164.05 -0.45 -13.83 16 20 C -0.27 -7.01 7.47 -15.06 -0.11 -7.12 16 21 H 0.10 2.79 6.05 -52.49 -0.32 2.47 16 22 C 0.03 0.87 5.31 -17.43 -0.09 0.78 16 23 N -0.89 -26.72 13.97 55.49 0.78 -25.95 16 24 Si 0.88 21.09 24.28 -169.99 -4.13 16.97 16 25 H -0.29 -6.78 6.60 56.52 0.37 -6.41 16 26 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 27 H -0.27 -6.26 6.50 56.52 0.37 -5.89 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.83 7.40 -51.93 -0.38 0.45 16 32 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.53 6.44 -51.93 -0.33 0.20 16 35 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 36 H 0.10 1.18 8.07 -51.93 -0.42 0.76 16 37 H 0.12 2.27 7.42 -51.93 -0.39 1.89 16 38 H 0.41 7.81 7.29 -40.82 -0.30 7.51 16 39 H 0.07 1.45 7.58 -51.93 -0.39 1.06 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.08 1.82 4.94 -51.93 -0.26 1.56 16 46 H 0.03 0.71 6.71 -51.93 -0.35 0.37 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -37.35 374.53 -5.56 -42.92 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.40 Total: 8.26 kcal Atomic # 6 Polarization: 24.05 SS G_CDS: 1.74 Total: 25.79 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.34 Total: -62.23 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -1.08 Total: -37.35 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.13 Total: 16.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.35 -5.56 -42.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673044615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.309 kcal (2) G-P(sol) polarization free energy of solvation -37.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds