Wall clock time and date at job start Tue Mar 31 2020 04:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99836 * 2 1 4 4 C 1.50706 * 109.47047 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00057 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99963 * 179.97438 * 4 3 2 7 7 C 1.46495 * 120.00138 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.47242 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.46932 * 180.02562 * 8 7 6 10 10 O 1.21278 * 120.00410 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99874 * 180.02562 * 9 8 7 12 12 C 1.47156 * 120.98091 * 359.97115 * 11 9 8 13 13 C 1.53286 * 108.38530 * 230.55756 * 12 11 9 14 14 O 1.42961 * 109.22305 * 307.70098 * 13 12 11 15 15 C 1.43041 * 114.18862 * 62.58618 * 14 13 12 16 16 H 1.08997 * 109.50842 * 57.32661 * 15 14 13 17 17 C 1.52997 * 109.56381 * 177.51303 * 15 14 13 18 18 N 1.46500 * 109.46882 * 299.71529 * 17 15 14 19 19 C 1.36939 * 120.00014 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99796 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00212 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99929 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00333 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47249 * 89.99727 * 23 21 19 25 25 H 1.48495 * 109.47479 * 209.99723 * 23 21 19 26 26 H 1.48502 * 109.47038 * 330.00034 * 23 21 19 27 27 C 1.47148 * 120.98259 * 179.97438 * 11 9 8 28 28 H 1.09005 * 109.46692 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47241 * 300.00122 * 1 2 3 30 30 H 1.08997 * 109.47189 * 60.00412 * 1 2 3 31 31 H 1.08997 * 109.47354 * 59.99479 * 3 2 1 32 32 H 1.08998 * 109.47055 * 299.99488 * 3 2 1 33 33 H 0.97008 * 120.00147 * 0.02562 * 6 4 3 34 34 H 1.09002 * 109.47475 * 60.00512 * 7 6 4 35 35 H 1.08995 * 109.47453 * 300.00352 * 7 6 4 36 36 H 1.08993 * 109.46970 * 60.00272 * 8 7 6 37 37 H 1.08998 * 109.47149 * 299.99883 * 8 7 6 38 38 H 1.08998 * 109.67987 * 350.28907 * 12 11 9 39 39 H 1.09001 * 109.67517 * 110.79822 * 12 11 9 40 40 H 1.09003 * 109.51258 * 67.62584 * 13 12 11 41 41 H 1.09004 * 109.51284 * 187.77593 * 13 12 11 42 42 H 1.08995 * 109.47317 * 59.72023 * 17 15 14 43 43 H 1.09006 * 109.47050 * 179.72356 * 17 15 14 44 44 H 0.97005 * 120.00275 * 0.02562 * 18 17 15 45 45 H 0.96997 * 120.00352 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.68336 * 249.16720 * 27 11 9 47 47 H 1.08999 * 109.68144 * 9.68390 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2968 0.0002 7 6 5.7368 2.1812 0.0014 8 6 6.3591 3.5790 0.0013 9 6 7.8614 3.4600 0.0019 10 8 8.3830 2.3652 0.0028 11 7 8.6253 4.5704 0.0024 12 6 8.0153 5.9096 0.0018 13 6 8.6568 6.7325 -1.1211 14 8 10.0793 6.6829 -0.9874 15 6 10.6350 5.3715 -1.1201 16 1 10.3525 4.9525 -2.0858 17 6 12.1598 5.4490 -1.0216 18 7 12.6758 6.3016 -2.0953 19 6 14.0230 6.5193 -2.2092 20 1 14.7050 6.0621 -1.5078 21 6 14.5119 7.3277 -3.2263 22 7 13.6807 7.8845 -4.0815 23 14 16.3496 7.6241 -3.3821 24 1 16.9461 6.5848 -4.2592 25 1 16.5863 8.9657 -3.9730 26 1 16.9775 7.5574 -2.0380 27 6 10.0940 4.4794 0.0035 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8592 3.1726 -0.0001 34 1 6.0592 1.6396 -0.8879 35 1 6.0578 1.6411 0.8920 36 1 6.0368 4.1203 0.8908 37 1 6.0382 4.1195 -0.8892 38 1 6.9427 5.8242 -0.1722 39 1 8.1940 6.3947 0.9614 40 1 8.3672 6.3185 -2.0870 41 1 8.3205 7.7671 -1.0521 42 1 12.4407 5.8702 -0.0564 43 1 12.5814 4.4483 -1.1180 44 1 12.0632 6.7120 -2.7257 45 1 14.0222 8.4496 -4.7920 46 1 10.4823 4.8211 0.9630 47 1 10.3980 3.4469 -0.1688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673277987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:34 Heat of formation + Delta-G solvation = -136.766237 kcal Electronic energy + Delta-G solvation = -27663.955305 eV Core-core repulsion = 23462.029552 eV Total energy + Delta-G solvation = -4201.925753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.62489 -40.06441 -38.51067 -37.89686 -35.53693 -35.13342 -34.42546 -32.43856 -31.65663 -30.20242 -29.27151 -28.10258 -26.57468 -25.70188 -23.78229 -23.55325 -22.23788 -21.22936 -20.86540 -19.27328 -17.83776 -17.69688 -17.18285 -16.96236 -16.88351 -16.50648 -16.26866 -15.96136 -15.60423 -15.20100 -15.04895 -14.91089 -14.55357 -14.38938 -14.09773 -13.74578 -13.44031 -13.25098 -13.14936 -12.75471 -12.70403 -12.67480 -12.38271 -12.01105 -11.97824 -11.89921 -11.61794 -11.05595 -10.91195 -10.78827 -10.53130 -10.34754 -10.27166 -10.11896 -9.94368 -9.92812 -9.68103 -9.52701 -8.86472 -8.62977 -6.89166 -5.72885 -3.01552 2.20474 2.22406 2.35718 2.74364 3.46236 3.51121 3.52929 3.54965 3.87958 4.10676 4.30126 4.34405 4.52421 4.54839 4.56653 4.60574 4.67732 4.74269 4.78797 4.83751 4.93721 4.99371 5.07784 5.16377 5.25207 5.39765 5.45542 5.59794 5.60483 5.61257 5.63614 5.83238 5.91144 5.91721 6.21294 6.26763 6.42369 6.54604 6.67804 6.99205 7.12561 7.40902 7.72237 7.79332 7.89832 8.45251 9.57123 10.14009 10.50043 11.49902 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.033536 B = 0.001689 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.710841 B =16577.409344 C =16739.447667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.512 6.512 6 N -0.732 5.732 7 C 0.135 3.865 8 C -0.152 4.152 9 C 0.519 3.481 10 O -0.534 6.534 11 N -0.613 5.613 12 C 0.071 3.929 13 C 0.045 3.955 14 O -0.356 6.356 15 C 0.074 3.926 16 H 0.063 0.937 17 C 0.163 3.837 18 N -0.726 5.726 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.085 3.915 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.400 0.600 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.105 0.895 42 H 0.029 0.971 43 H 0.036 0.964 44 H 0.388 0.612 45 H 0.254 0.746 46 H 0.079 0.921 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.233 -5.981 10.549 31.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.296 3.704 5 O -0.386 6.386 6 N -0.387 5.387 7 C 0.012 3.988 8 C -0.192 4.192 9 C 0.307 3.693 10 O -0.410 6.410 11 N -0.347 5.347 12 C -0.052 4.052 13 C -0.033 4.033 14 O -0.274 6.274 15 C 0.015 3.985 16 H 0.081 0.919 17 C 0.035 3.965 18 N -0.370 5.370 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.038 4.038 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.234 0.766 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.123 0.877 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.222 0.778 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -28.162 -7.417 10.621 30.999 hybrid contribution 0.113 1.085 -0.384 1.156 sum -28.049 -6.332 10.237 30.523 Atomic orbital electron populations 1.22858 0.80154 1.03515 1.00170 1.88034 1.19952 1.25053 1.95423 1.22228 0.91450 0.87221 1.02716 1.20255 0.88703 0.84549 0.76890 1.90783 1.74529 1.26418 1.46821 1.45838 1.07153 1.08776 1.76928 1.21054 0.77736 0.95514 1.04495 1.21827 0.93127 0.99191 1.05086 1.20271 0.88841 0.83922 0.76302 1.90760 1.74779 1.26001 1.49462 1.48166 1.07252 1.05906 1.73424 1.22547 0.98234 0.83153 1.01288 1.22915 0.83094 1.00789 0.96521 1.88190 1.18337 1.28045 1.92845 1.22827 0.96041 0.82948 0.96672 0.91871 1.20629 0.86923 0.95322 0.93649 1.42205 1.05172 1.57187 1.32460 1.19235 0.83503 1.24151 1.10213 0.91129 1.24736 0.97708 1.00306 0.98175 1.69674 1.33008 1.36679 1.18692 0.86176 0.85179 0.77183 0.77565 1.21744 1.21791 1.20751 1.22377 0.78293 1.02813 1.00315 0.88958 0.93733 0.93693 0.90132 0.90083 0.76601 0.90181 0.90251 0.88056 0.88010 0.89157 0.90184 0.92821 0.87725 0.95347 0.94624 0.77847 0.93582 0.90305 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.37 -3.31 10.24 -55.14 -0.56 -3.87 16 3 C 0.04 0.26 6.42 36.01 0.23 0.49 16 4 C 0.51 4.77 7.91 -10.98 -0.09 4.69 16 5 O -0.51 -7.70 16.50 -14.35 -0.24 -7.94 16 6 N -0.73 -4.56 5.56 -60.29 -0.33 -4.90 16 7 C 0.14 1.18 4.96 -4.04 -0.02 1.16 16 8 C -0.15 -0.98 4.19 -27.88 -0.12 -1.10 16 9 C 0.52 5.93 7.71 -10.98 -0.08 5.85 16 10 O -0.53 -8.37 15.45 5.56 0.09 -8.29 16 11 N -0.61 -6.93 3.02 -172.26 -0.52 -7.45 16 12 C 0.07 0.59 6.54 -3.54 -0.02 0.56 16 13 C 0.04 0.50 6.99 37.31 0.26 0.76 16 14 O -0.36 -5.95 10.15 -35.23 -0.36 -6.30 16 15 C 0.07 1.23 2.87 -26.56 -0.08 1.15 16 16 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 17 C 0.16 3.32 5.96 -4.04 -0.02 3.29 16 18 N -0.73 -18.85 5.50 -59.91 -0.33 -19.18 16 19 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 23 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.08 1.17 5.93 -3.52 -0.02 1.14 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.40 0.85 8.47 -40.82 -0.35 0.51 16 34 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.10 0.39 8.01 -51.93 -0.42 -0.02 16 37 H 0.10 0.44 7.66 -51.93 -0.40 0.04 16 38 H 0.09 0.41 6.05 -51.93 -0.31 0.09 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.39 10.68 7.55 -40.82 -0.31 10.37 16 45 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.10 1.50 7.08 -51.93 -0.37 1.14 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -39.82 391.17 -7.37 -47.19 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.61 Total: 3.27 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 0.91 Total: 11.78 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.46 Total: -59.35 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -1.07 Total: -26.40 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.82 -7.37 -47.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673277987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.581 kcal (2) G-P(sol) polarization free energy of solvation -39.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds