Wall clock time and date at job start Tue Mar 31 2020 05:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46904 * 109.47156 * 2 1 4 4 C 1.47017 * 110.99693 * 46.36361 * 3 2 1 5 5 C 1.53097 * 109.25572 * 182.38932 * 4 3 2 6 6 O 1.43017 * 109.26232 * 303.15453 * 5 4 3 7 7 C 1.43015 * 113.73744 * 58.66997 * 6 5 4 8 8 C 1.47016 * 110.99937 * 169.99895 * 3 2 1 9 9 H 1.08999 * 109.53996 * 297.56411 * 8 3 2 10 10 C 1.50697 * 109.50577 * 57.67601 * 8 3 2 11 11 O 1.21280 * 120.00374 * 359.77511 * 10 8 3 12 12 N 1.34777 * 119.99661 * 179.50784 * 10 8 3 13 13 C 1.46501 * 119.99813 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47205 * 179.97438 * 13 12 10 15 15 O 1.42896 * 109.46813 * 64.99882 * 14 13 12 16 16 C 1.42904 * 113.99585 * 179.97438 * 15 14 13 17 17 C 1.53008 * 109.47003 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.47172 * 65.00306 * 17 16 15 19 19 C 1.46501 * 119.99967 * 270.00238 * 18 17 16 20 20 C 1.36938 * 120.00038 * 90.00062 * 18 17 16 21 21 H 1.07999 * 119.99871 * 22.70362 * 20 18 17 22 22 C 1.38812 * 119.99798 * 202.70800 * 20 18 17 23 23 N 1.31617 * 120.00322 * 11.51017 * 22 20 18 24 24 Si 1.86804 * 119.99717 * 191.51569 * 22 20 18 25 25 H 1.48497 * 109.47124 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46975 * 119.99772 * 24 22 20 27 27 H 1.48502 * 109.46878 * 239.99730 * 24 22 20 28 28 H 1.08995 * 109.46666 * 60.00067 * 1 2 3 29 29 H 1.09002 * 109.46746 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47112 * 299.99549 * 1 2 3 31 31 H 1.08998 * 109.47118 * 239.99894 * 2 1 3 32 32 H 1.08999 * 109.47374 * 120.00017 * 2 1 3 33 33 H 1.09003 * 109.50611 * 62.46346 * 4 3 2 34 34 H 1.08998 * 109.54124 * 302.35247 * 4 3 2 35 35 H 1.09001 * 109.50867 * 183.21605 * 5 4 3 36 36 H 1.09001 * 109.53759 * 63.11327 * 5 4 3 37 37 H 1.09001 * 109.50413 * 181.39848 * 7 6 5 38 38 H 1.08997 * 109.54632 * 61.28531 * 7 6 5 39 39 H 0.96997 * 120.00455 * 359.97438 * 12 10 8 40 40 H 1.09006 * 109.47350 * 299.99764 * 13 12 10 41 41 H 1.08998 * 109.47290 * 59.99233 * 13 12 10 42 42 H 1.09002 * 109.47379 * 184.99604 * 14 13 12 43 43 H 1.09000 * 109.47027 * 305.00087 * 14 13 12 44 44 H 1.08995 * 109.47921 * 300.00193 * 16 15 14 45 45 H 1.09002 * 109.47084 * 60.00913 * 16 15 14 46 46 H 1.08999 * 109.47298 * 185.00653 * 17 16 15 47 47 H 1.09004 * 109.47159 * 305.00056 * 17 16 15 48 48 H 1.08997 * 109.47609 * 93.91434 * 19 18 17 49 49 H 1.08996 * 109.47099 * 213.91736 * 19 18 17 50 50 H 1.09006 * 109.47096 * 333.90953 * 19 18 17 51 51 H 0.97002 * 120.00045 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3023 2.1974 0.9934 5 6 1.8009 3.6430 0.9184 6 8 3.2164 3.6650 1.1214 7 6 3.9464 2.8845 0.1710 8 6 3.4697 1.4312 0.2384 9 1 3.6904 1.0210 1.2238 10 6 4.1789 0.6196 -0.8149 11 8 3.5401 0.0543 -1.6771 12 7 5.5233 0.5264 -0.8019 13 6 6.2128 -0.2630 -1.8255 14 6 7.7225 -0.2038 -1.5844 15 8 8.0319 -0.8411 -0.3434 16 6 9.4242 -0.8413 -0.0215 17 6 9.6374 -1.5460 1.3198 18 7 9.2687 -2.9582 1.1935 19 6 7.8937 -3.3835 1.4672 20 6 10.2091 -3.8807 0.8197 21 1 11.2584 -3.6729 0.9689 22 6 9.8138 -5.0827 0.2490 23 7 8.5677 -5.2476 -0.1411 24 14 11.0504 -6.4663 0.0350 25 1 12.3737 -6.0315 0.5497 26 1 10.5930 -7.6603 0.7902 27 1 11.1677 -6.8068 -1.4057 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.4878 1.7998 1.9912 34 1 0.2331 2.1697 0.7834 35 1 1.3131 4.2368 1.6915 36 1 1.5672 4.0589 -0.0616 37 1 5.0104 2.9297 0.4035 38 1 3.7759 3.2773 -0.8314 39 1 6.0345 0.9820 -0.1149 40 1 5.8765 -1.2986 -1.7734 41 1 5.9864 0.1431 -2.8113 42 1 8.2404 -0.7164 -2.3950 43 1 8.0441 0.8371 -1.5484 44 1 9.9771 -1.3673 -0.7997 45 1 9.7815 0.1862 0.0469 46 1 10.6857 -1.4686 1.6084 47 1 9.0154 -1.0747 2.0809 48 1 7.3275 -3.4039 0.5360 49 1 7.9027 -4.3799 1.9088 50 1 7.4278 -2.6831 2.1604 51 1 8.2913 -6.0878 -0.5396 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676115141.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:35 Heat of formation + Delta-G solvation = -82.825547 kcal Electronic energy + Delta-G solvation = -29620.567083 eV Core-core repulsion = 25556.813469 eV Total energy + Delta-G solvation = -4063.753614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.71697 -38.87109 -37.63879 -36.38059 -35.39780 -34.41855 -32.32725 -31.41157 -30.88982 -29.47259 -27.87152 -26.84572 -25.71498 -25.05190 -23.03738 -22.67408 -22.24310 -21.04358 -20.36977 -20.14295 -17.67120 -16.93372 -16.74984 -16.56606 -16.10671 -16.04227 -15.52983 -15.38743 -14.93554 -14.88554 -14.77524 -14.48006 -14.26151 -13.83474 -13.61012 -13.37289 -13.23023 -12.89812 -12.70316 -12.36093 -12.15213 -12.07448 -11.87585 -11.63585 -11.58353 -11.40029 -11.18171 -10.92143 -10.86529 -10.80916 -10.77046 -10.51608 -10.18751 -10.07105 -9.89995 -9.81379 -9.53408 -9.04647 -9.03419 -8.54661 -8.49395 -6.67597 -5.65943 -3.12382 2.55790 2.95306 3.38982 3.39844 3.46016 3.47902 3.68244 4.13897 4.44740 4.53645 4.59530 4.63083 4.76104 4.87728 4.90877 5.07986 5.14735 5.16358 5.23197 5.27575 5.30381 5.36003 5.44941 5.47135 5.56008 5.57229 5.65654 5.70875 5.71637 5.97290 5.98371 6.05963 6.10389 6.18934 6.22123 6.47479 6.54195 6.62137 6.72835 6.75946 6.78579 6.94189 7.48657 7.50915 7.76727 7.83085 7.96825 8.21110 8.45684 9.30202 9.93945 10.44311 11.38102 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.002544 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.527419 B =11002.343192 C =11606.408216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.034 3.966 3 N -0.514 5.514 4 C 0.011 3.989 5 C 0.060 3.940 6 O -0.379 6.379 7 C 0.077 3.923 8 C 0.029 3.971 9 H 0.078 0.922 10 C 0.521 3.479 11 O -0.523 6.523 12 N -0.717 5.717 13 C 0.126 3.874 14 C 0.050 3.950 15 O -0.367 6.367 16 C 0.043 3.957 17 C 0.153 3.847 18 N -0.596 5.596 19 C 0.175 3.825 20 C -0.257 4.257 21 H 0.067 0.933 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.291 1.291 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.029 0.971 33 H 0.043 0.957 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.403 0.597 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.049 0.951 45 H 0.025 0.975 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.032 0.968 49 H 0.037 0.963 50 H -0.008 1.008 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.499 18.767 0.604 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.092 4.092 3 N -0.241 5.241 4 C -0.117 4.117 5 C -0.016 4.016 6 O -0.297 6.297 7 C -0.001 4.001 8 C -0.083 4.083 9 H 0.095 0.905 10 C 0.305 3.695 11 O -0.399 6.399 12 N -0.370 5.370 13 C 0.002 3.998 14 C -0.028 4.028 15 O -0.286 6.286 16 C -0.037 4.037 17 C 0.024 3.976 18 N -0.319 5.319 19 C 0.031 3.969 20 C -0.386 4.386 21 H 0.085 0.915 22 C -0.197 4.197 23 N -0.547 5.547 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.218 1.218 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.237 0.763 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.043 0.957 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.050 0.950 49 H 0.056 0.944 50 H 0.011 0.989 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.184 18.387 -0.279 22.627 hybrid contribution 1.139 -1.107 0.458 1.653 sum -12.045 17.280 0.179 21.064 Atomic orbital electron populations 1.21910 0.95126 1.02037 1.01872 1.22543 0.95502 0.88049 1.03137 1.62119 1.01035 1.12723 1.48196 1.22953 1.00169 0.94338 0.94221 1.22746 0.81233 0.95438 1.02232 1.88017 1.18355 1.69544 1.53802 1.22580 0.96321 0.87331 0.93879 1.22318 0.90372 0.97666 0.97938 0.90464 1.20089 0.82258 0.81272 0.85835 1.90619 1.65236 1.46450 1.37555 1.45919 1.06253 1.52440 1.32367 1.21412 0.90406 0.97190 0.90762 1.22607 0.94254 0.96458 0.89433 1.88011 1.25448 1.78680 1.36463 1.23520 0.81376 0.97137 1.01655 1.20894 0.98252 0.85922 0.92493 1.43887 1.08207 1.00731 1.79057 1.20680 0.84092 0.95364 0.96795 1.19238 0.88609 0.96567 1.34230 0.91533 1.25037 0.96401 0.99447 0.98773 1.70105 1.15789 1.24626 1.44163 0.86234 0.80681 0.82585 0.77321 1.20414 1.21676 1.21831 0.91810 0.91991 0.92926 0.86864 0.95257 0.93828 0.88574 0.88234 0.92046 0.87878 0.91566 0.76287 0.90073 0.90422 0.92018 0.93769 0.93296 0.95687 0.92366 0.93874 0.94995 0.94444 0.98949 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.18 37.16 0.34 -1.07 16 2 C 0.03 0.41 5.34 -3.82 -0.02 0.39 16 3 N -0.51 -5.81 4.51 -227.72 -1.03 -6.84 16 4 C 0.01 0.10 4.94 -3.71 -0.02 0.08 16 5 C 0.06 0.49 7.01 37.21 0.26 0.75 16 6 O -0.38 -3.84 10.83 -35.23 -0.38 -4.22 16 7 C 0.08 0.73 6.16 37.21 0.23 0.95 16 8 C 0.03 0.33 2.36 -68.75 -0.16 0.17 16 9 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 10 C 0.52 7.01 6.89 -10.99 -0.08 6.94 16 11 O -0.52 -8.74 13.69 5.56 0.08 -8.67 16 12 N -0.72 -8.87 5.40 -60.29 -0.33 -9.20 16 13 C 0.13 1.72 6.06 -4.04 -0.02 1.70 16 14 C 0.05 0.70 6.07 37.16 0.23 0.93 16 15 O -0.37 -6.68 9.84 -35.23 -0.35 -7.03 16 16 C 0.04 0.77 6.28 37.16 0.23 1.00 16 17 C 0.15 3.08 6.11 -4.04 -0.02 3.06 16 18 N -0.60 -15.16 2.89 -181.12 -0.52 -15.68 16 19 C 0.18 4.51 8.61 59.85 0.52 5.02 16 20 C -0.26 -7.07 9.67 -15.06 -0.15 -7.22 16 21 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 22 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 23 N -0.90 -26.71 10.62 55.49 0.59 -26.12 16 24 Si 0.90 21.98 29.57 -169.99 -5.03 16.96 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.41 6.28 -51.93 -0.33 0.09 16 31 H 0.11 1.66 5.48 -51.93 -0.28 1.38 16 32 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.71 6.05 -51.93 -0.31 0.39 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.79 7.65 -51.93 -0.40 0.39 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.40 4.25 7.94 -40.82 -0.32 3.92 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 1.10 8.03 -51.93 -0.42 0.69 16 47 H 0.04 0.81 7.87 -51.93 -0.41 0.40 16 48 H 0.03 0.90 7.43 -51.93 -0.39 0.51 16 49 H 0.04 1.03 7.20 -51.93 -0.37 0.66 16 50 H -0.01 -0.19 7.85 -51.93 -0.41 -0.59 16 51 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 400.33 15.07 6.03 6.03 Total: -1.00 -33.28 400.33 -8.79 -42.07 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -9.10 Total: 0.03 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 1.24 Total: 12.67 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -1.29 Total: -57.84 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.65 Total: -19.92 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.28 -8.79 -42.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676115141.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.757 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds