Wall clock time and date at job start Tue Mar 31 2020 05:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.46823 * 2 1 4 4 C 1.47016 * 111.00161 * 289.32108 * 3 2 1 5 5 C 1.53100 * 109.25507 * 177.60693 * 4 3 2 6 6 O 1.43016 * 109.25887 * 56.84917 * 5 4 3 7 7 C 1.43025 * 113.77473 * 301.35024 * 6 5 4 8 8 C 1.47009 * 111.00095 * 165.68174 * 3 2 1 9 9 H 1.09000 * 109.50703 * 62.41598 * 8 3 2 10 10 C 1.50702 * 109.50610 * 302.33160 * 8 3 2 11 11 O 1.21279 * 120.00160 * 330.26150 * 10 8 3 12 12 N 1.34774 * 119.99936 * 149.99191 * 10 8 3 13 13 C 1.46505 * 120.00199 * 180.27666 * 12 10 8 14 14 C 1.52995 * 109.47433 * 179.97438 * 13 12 10 15 15 O 1.42900 * 109.47599 * 64.99402 * 14 13 12 16 16 C 1.42892 * 114.00534 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47471 * 180.02562 * 16 15 14 18 18 N 1.46503 * 109.47041 * 65.00236 * 17 16 15 19 19 C 1.46499 * 119.99978 * 89.99550 * 18 17 16 20 20 C 1.36932 * 120.00162 * 270.00369 * 18 17 16 21 21 H 1.07993 * 120.00555 * 142.13977 * 20 18 17 22 22 C 1.38819 * 119.99865 * 322.13761 * 20 18 17 23 23 N 1.31616 * 120.00330 * 157.97744 * 22 20 18 24 24 Si 1.86808 * 119.99729 * 337.98447 * 22 20 18 25 25 H 1.48494 * 109.47172 * 95.57424 * 24 22 20 26 26 H 1.48498 * 109.46804 * 215.57791 * 24 22 20 27 27 H 1.48499 * 109.47037 * 335.57389 * 24 22 20 28 28 H 1.08998 * 109.47357 * 299.99786 * 1 2 3 29 29 H 1.09006 * 109.47329 * 60.00178 * 1 2 3 30 30 H 1.09006 * 109.47172 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47357 * 240.00213 * 2 1 3 32 32 H 1.08998 * 109.47019 * 119.99832 * 2 1 3 33 33 H 1.08999 * 109.50280 * 297.53534 * 4 3 2 34 34 H 1.08999 * 109.50841 * 57.67083 * 4 3 2 35 35 H 1.09005 * 109.50209 * 176.78046 * 5 4 3 36 36 H 1.08997 * 109.50641 * 296.91183 * 5 4 3 37 37 H 1.08993 * 109.47019 * 298.68909 * 7 6 5 38 38 H 1.08999 * 109.54157 * 178.56085 * 7 6 5 39 39 H 0.97001 * 120.00457 * 0.26988 * 12 10 8 40 40 H 1.09007 * 109.46705 * 299.99340 * 13 12 10 41 41 H 1.08993 * 109.47044 * 59.99056 * 13 12 10 42 42 H 1.09004 * 109.47269 * 184.99556 * 14 13 12 43 43 H 1.09002 * 109.46991 * 304.99467 * 14 13 12 44 44 H 1.09005 * 109.47090 * 300.00403 * 16 15 14 45 45 H 1.09003 * 109.46835 * 59.99835 * 16 15 14 46 46 H 1.09007 * 109.47039 * 184.99956 * 17 16 15 47 47 H 1.09001 * 109.47262 * 305.00276 * 17 16 15 48 48 H 1.09007 * 109.46569 * 95.04460 * 19 18 17 49 49 H 1.09001 * 109.47251 * 215.04153 * 19 18 17 50 50 H 1.09001 * 109.47527 * 335.04973 * 19 18 17 51 51 H 0.96995 * 119.99881 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7671 2.0331 -1.2952 5 6 2.2374 3.4887 -1.2316 6 8 3.6207 3.5221 -0.8700 7 6 3.9035 2.8997 0.3863 8 6 3.4490 1.4386 0.3394 9 1 4.0229 0.9029 -0.4167 10 6 3.6707 0.7992 1.6859 11 8 2.7946 0.8310 2.5240 12 7 4.8405 0.1873 1.9569 13 6 5.0539 -0.4396 3.2638 14 6 6.4524 -1.0583 3.3105 15 8 7.4342 -0.0237 3.2226 16 6 8.7821 -0.4970 3.2569 17 6 9.7422 0.6901 3.1573 18 7 9.5981 1.5358 4.3449 19 6 10.4229 1.2826 5.5289 20 6 8.6923 2.5627 4.3483 21 1 8.1312 2.7849 5.2439 22 6 8.4953 3.3183 3.2006 23 7 7.3747 3.9894 3.0387 24 14 9.8206 3.3823 1.8856 25 1 9.5230 2.3775 0.8335 26 1 9.8525 4.7380 1.2806 27 1 11.1400 3.0822 2.4976 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3143 1.5077 -2.0779 34 1 0.6997 2.0048 -1.5145 35 1 2.1048 3.9569 -2.2070 36 1 1.6531 4.0278 -0.4859 37 1 3.3683 3.4221 1.1791 38 1 4.9751 2.9416 0.5809 39 1 5.5413 0.1618 1.2867 40 1 4.9629 0.3131 4.0469 41 1 4.3072 -1.2181 3.4195 42 1 6.5788 -1.6004 4.2477 43 1 6.5735 -1.7461 2.4736 44 1 8.9570 -1.0278 4.1928 45 1 8.9512 -1.1729 2.4187 46 1 10.7671 0.3242 3.0940 47 1 9.5086 1.2725 2.2660 48 1 11.3049 1.9226 5.5008 49 1 9.8451 1.4994 6.4273 50 1 10.7326 0.2375 5.5393 51 1 7.2373 4.5176 2.2369 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676115142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:40 Heat of formation + Delta-G solvation = -79.974542 kcal Electronic energy + Delta-G solvation = -30431.840375 eV Core-core repulsion = 26368.210389 eV Total energy + Delta-G solvation = -4063.629986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.40856 -38.59269 -37.59041 -36.09739 -35.56617 -34.19030 -31.89793 -31.49388 -30.94131 -29.73818 -28.12896 -26.63081 -26.03391 -24.77866 -22.89458 -22.41618 -22.08300 -20.97058 -20.65389 -19.87351 -17.40191 -16.70235 -16.60380 -16.48190 -16.28069 -15.88243 -15.33828 -15.10885 -14.92908 -14.79193 -14.40575 -14.21954 -14.09955 -13.71123 -13.61589 -13.47520 -12.96381 -12.85861 -12.68393 -12.46897 -12.21672 -12.00604 -11.92127 -11.80480 -11.67128 -11.44054 -11.36787 -11.01913 -10.95826 -10.82017 -10.66456 -10.55895 -10.34854 -9.85264 -9.76812 -9.50991 -9.39155 -8.99094 -8.76221 -8.46978 -8.38170 -6.72589 -5.83667 -3.24835 2.81141 3.18685 3.34639 3.52342 3.55629 3.70201 3.97964 4.20189 4.62804 4.72633 4.80231 4.89091 4.98859 5.02295 5.05865 5.10330 5.22522 5.29878 5.30989 5.37542 5.39163 5.48003 5.53047 5.61553 5.68801 5.71603 5.77532 5.84708 5.85058 5.88734 5.92993 6.05759 6.08088 6.13566 6.24681 6.24834 6.26727 6.55053 6.68052 6.72502 6.75939 6.77061 6.85718 7.13060 7.75966 7.83555 8.17983 8.48005 8.50827 9.08214 9.85009 10.22400 11.31849 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.014382 B = 0.003757 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.461145 B = 7451.303414 C = 8734.754674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 N -0.514 5.514 4 C 0.019 3.981 5 C 0.059 3.941 6 O -0.377 6.377 7 C 0.077 3.923 8 C 0.036 3.964 9 H 0.064 0.936 10 C 0.523 3.477 11 O -0.523 6.523 12 N -0.714 5.714 13 C 0.129 3.871 14 C 0.046 3.954 15 O -0.340 6.340 16 C 0.048 3.952 17 C 0.135 3.865 18 N -0.607 5.607 19 C 0.125 3.875 20 C -0.253 4.253 21 H 0.074 0.926 22 C 0.045 3.955 23 N -0.894 5.894 24 Si 0.870 3.130 25 H -0.288 1.288 26 H -0.303 1.303 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.403 0.597 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.041 0.959 44 H 0.038 0.962 45 H 0.028 0.972 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.008 0.992 49 H 0.038 0.962 50 H 0.027 0.973 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.401 -10.873 -8.637 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 N -0.240 5.240 4 C -0.109 4.109 5 C -0.018 4.018 6 O -0.295 6.295 7 C 0.000 4.000 8 C -0.077 4.077 9 H 0.082 0.918 10 C 0.307 3.693 11 O -0.399 6.399 12 N -0.366 5.366 13 C 0.005 3.995 14 C -0.032 4.032 15 O -0.258 6.258 16 C -0.031 4.031 17 C 0.009 3.991 18 N -0.331 5.331 19 C -0.020 4.020 20 C -0.382 4.382 21 H 0.092 0.908 22 C -0.155 4.155 23 N -0.535 5.535 24 Si 0.702 3.298 25 H -0.216 1.216 26 H -0.231 1.231 27 H -0.199 1.199 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.133 0.867 39 H 0.237 0.763 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.026 0.974 49 H 0.057 0.943 50 H 0.046 0.954 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.283 -10.180 -7.834 15.849 hybrid contribution 1.415 -0.932 -1.601 2.331 sum -7.868 -11.112 -9.435 16.565 Atomic orbital electron populations 1.21717 0.94465 1.01341 1.02467 1.22162 0.96702 0.88218 1.00846 1.61989 1.14194 1.17895 1.29961 1.22873 1.02085 0.96168 0.89774 1.22701 0.83136 0.94776 1.01212 1.88041 1.24879 1.78431 1.38186 1.22617 1.02710 0.88354 0.86330 1.22291 0.90365 0.99575 0.95422 0.91790 1.19989 0.82270 0.78258 0.88744 1.90692 1.43148 1.58020 1.48023 1.45855 1.16590 1.56952 1.17225 1.21316 0.94342 0.97833 0.85967 1.22648 0.89313 0.91343 0.99911 1.88347 1.13510 1.29542 1.94380 1.23295 0.84037 0.98002 0.97812 1.21305 0.94408 0.91096 0.92326 1.43969 1.43870 1.33534 1.11728 1.21065 0.93751 0.96589 0.90587 1.18613 1.13357 1.06245 0.99969 0.90811 1.25313 0.96153 0.96564 0.97453 1.69888 1.22843 1.33231 1.27572 0.87048 0.84905 0.75664 0.82232 1.21632 1.23117 1.19923 0.91428 0.92981 0.92444 0.95168 0.90153 0.94002 0.89165 0.88441 0.91967 0.91007 0.86713 0.76302 0.89915 0.90922 0.92563 0.94067 0.94416 0.95358 0.92907 0.92087 0.97403 0.94315 0.95381 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.94 37.16 0.37 -1.07 16 2 C 0.05 0.58 5.37 -3.82 -0.02 0.56 16 3 N -0.51 -6.97 4.25 -227.73 -0.97 -7.94 16 4 C 0.02 0.21 5.46 -3.71 -0.02 0.19 16 5 C 0.06 0.69 7.01 37.21 0.26 0.95 16 6 O -0.38 -5.80 10.82 -35.23 -0.38 -6.18 16 7 C 0.08 1.27 6.28 37.21 0.23 1.50 16 8 C 0.04 0.53 2.37 -68.76 -0.16 0.37 16 9 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 10 C 0.52 8.84 5.70 -10.99 -0.06 8.78 16 11 O -0.52 -10.44 15.69 5.56 0.09 -10.36 16 12 N -0.71 -11.29 5.50 -60.29 -0.33 -11.63 16 13 C 0.13 2.02 6.06 -4.04 -0.02 1.99 16 14 C 0.05 0.68 6.07 37.15 0.23 0.90 16 15 O -0.34 -6.74 9.76 -35.23 -0.34 -7.08 16 16 C 0.05 0.86 6.28 37.16 0.23 1.10 16 17 C 0.14 2.84 4.91 -4.04 -0.02 2.82 16 18 N -0.61 -14.42 2.45 -181.11 -0.44 -14.87 16 19 C 0.13 2.50 10.69 59.85 0.64 3.14 16 20 C -0.25 -7.10 9.44 -15.06 -0.14 -7.24 16 21 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 22 C 0.05 1.30 5.31 -17.43 -0.09 1.20 16 23 N -0.89 -26.88 13.97 55.49 0.78 -26.10 16 24 Si 0.87 22.13 25.03 -169.99 -4.25 17.87 16 25 H -0.29 -7.04 6.68 56.52 0.38 -6.66 16 26 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 27 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.46 6.67 -51.93 -0.35 0.11 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.03 0.33 8.07 -51.93 -0.42 -0.09 16 32 H 0.08 1.12 6.03 -51.93 -0.31 0.80 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.82 6.56 -51.93 -0.34 0.48 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 39 H 0.40 5.93 8.47 -40.82 -0.35 5.58 16 40 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.96 8.07 -51.92 -0.42 0.54 16 47 H 0.06 1.43 3.28 -51.93 -0.17 1.26 16 48 H 0.01 0.15 8.14 -51.92 -0.42 -0.27 16 49 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 50 H 0.03 0.47 8.03 -51.93 -0.42 0.05 16 51 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 401.04 15.07 6.04 6.04 Total: -1.00 -33.87 401.04 -7.52 -41.38 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -9.12 Total: 3.68 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 1.42 Total: 15.18 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.97 Total: -60.53 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.64 Total: -23.62 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.25 Total: 17.87 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.87 -7.52 -41.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676115142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.593 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds