Wall clock time and date at job start Tue Mar 31 2020 04:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 120.00628 * 2 1 4 4 C 1.52999 * 109.47346 * 270.00398 * 3 2 1 5 5 O 1.42900 * 109.47188 * 64.99939 * 4 3 2 6 6 C 1.42906 * 113.99931 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.46900 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47474 * 64.99590 * 7 6 5 9 9 C 1.36940 * 120.00065 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00181 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99879 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00285 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99871 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47385 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47153 * 120.00214 * 13 11 9 16 16 H 1.48502 * 109.46914 * 239.99794 * 13 11 9 17 17 C 1.34774 * 119.99828 * 180.02562 * 2 1 3 18 18 O 1.21279 * 120.00472 * 179.97438 * 17 2 1 19 19 C 1.50706 * 120.00020 * 0.02562 * 17 2 1 20 20 N 1.46496 * 109.47106 * 179.97438 * 19 17 2 21 21 C 1.46094 * 118.73111 * 269.72860 * 20 19 17 22 22 C 1.53212 * 109.82483 * 161.46875 * 21 20 19 23 23 O 1.43244 * 108.51261 * 49.54342 * 22 21 20 24 24 C 1.42971 * 112.98756 * 291.45691 * 23 22 21 25 25 C 1.33869 * 118.72948 * 89.99873 * 20 19 17 26 26 O 1.21280 * 118.83516 * 1.88443 * 25 20 19 27 27 H 1.08997 * 109.47477 * 270.00204 * 1 2 3 28 28 H 1.09004 * 109.46971 * 29.99775 * 1 2 3 29 29 H 1.08993 * 109.47768 * 149.99839 * 1 2 3 30 30 H 1.09008 * 109.47096 * 29.99824 * 3 2 1 31 31 H 1.09003 * 109.47776 * 149.99700 * 3 2 1 32 32 H 1.09007 * 109.46961 * 184.99659 * 4 3 2 33 33 H 1.08999 * 109.46922 * 304.99462 * 4 3 2 34 34 H 1.09003 * 109.46737 * 299.99443 * 6 5 4 35 35 H 1.08994 * 109.47095 * 59.99506 * 6 5 4 36 36 H 1.08995 * 109.47120 * 184.99934 * 7 6 5 37 37 H 1.09000 * 109.47315 * 304.99619 * 7 6 5 38 38 H 0.97001 * 119.99786 * 0.02562 * 8 7 6 39 39 H 0.96993 * 120.00496 * 179.97438 * 12 11 9 40 40 H 1.09001 * 109.46953 * 299.99667 * 19 17 2 41 41 H 1.09000 * 109.47318 * 59.99264 * 19 17 2 42 42 H 1.08994 * 109.39479 * 281.78865 * 21 20 19 43 43 H 1.09004 * 109.39036 * 41.50383 * 21 20 19 44 44 H 1.09003 * 109.82817 * 289.74824 * 22 21 20 45 45 H 1.08992 * 109.66547 * 169.24434 * 22 21 20 46 46 H 1.09009 * 109.41391 * 289.49892 * 24 23 22 47 47 H 1.08998 * 109.36120 * 169.66809 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 8 1.2061 1.9936 -2.0813 6 6 1.3325 2.4166 -3.4405 7 6 -0.0566 2.6899 -4.0207 8 7 -0.6656 3.8216 -3.3176 9 6 -1.9177 4.2516 -3.6677 10 1 -2.4564 3.7562 -4.4618 11 6 -2.4946 5.3243 -3.0018 12 7 -1.8383 5.9279 -2.0336 13 14 -4.2028 5.9104 -3.4788 14 1 -4.7227 5.0705 -4.5876 15 1 -5.1089 5.8008 -2.3074 16 1 -4.1347 7.3264 -3.9211 17 6 2.1388 -1.1672 -0.0005 18 8 3.3516 -1.1673 -0.0010 19 6 1.3852 -2.4723 -0.0017 20 7 2.3372 -3.5858 -0.0027 21 6 2.7889 -4.1224 -1.2842 22 6 4.0788 -4.9250 -1.0858 23 8 3.8824 -5.8410 -0.0022 24 6 3.7613 -5.1894 1.2647 25 6 2.7553 -4.0760 1.1708 26 8 2.3064 -3.6055 2.1945 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5139 32 1 3.0734 2.6064 -1.4437 33 1 2.9642 0.9131 -1.9815 34 1 1.9302 3.3271 -3.4835 35 1 1.8207 1.6337 -4.0207 36 1 0.0327 2.9263 -5.0810 37 1 -0.6823 1.8060 -3.8970 38 1 -0.1816 4.2669 -2.6046 39 1 -2.2412 6.6777 -1.5685 40 1 0.7583 -2.5307 0.8881 41 1 0.7588 -2.5294 -0.8919 42 1 2.0158 -4.7696 -1.6984 43 1 2.9786 -3.3002 -1.9742 44 1 4.9016 -4.2501 -0.8498 45 1 4.3097 -5.4789 -1.9957 46 1 4.7288 -4.7800 1.5555 47 1 3.4338 -5.9115 2.0126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677491185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:28 Heat of formation + Delta-G solvation = -126.536038 kcal Electronic energy + Delta-G solvation = -28870.736620 eV Core-core repulsion = 24669.254482 eV Total energy + Delta-G solvation = -4201.482138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.20283 -39.73582 -38.04554 -37.74292 -35.86812 -35.41517 -34.39665 -31.68295 -30.95941 -30.30945 -29.08077 -27.66329 -26.74037 -25.98187 -24.30914 -23.53501 -22.82647 -21.16719 -19.89028 -19.15623 -18.10579 -17.57906 -17.38518 -17.17120 -16.49430 -16.35857 -16.04629 -15.89407 -15.59173 -15.23684 -14.84372 -14.61592 -14.32873 -14.06160 -13.84440 -13.56423 -13.43781 -13.18895 -13.04661 -12.92605 -12.67833 -12.35830 -12.25126 -12.17421 -11.82328 -11.73145 -11.67732 -11.37387 -10.96885 -10.93103 -10.82456 -10.51843 -10.24319 -10.00393 -9.82623 -9.72521 -9.29211 -9.06909 -8.89067 -8.70853 -6.89954 -5.74845 -3.03140 2.07503 2.35395 2.47150 3.00560 3.28733 3.43208 3.48679 3.51080 3.89816 3.97643 4.28441 4.36118 4.56005 4.60196 4.65612 4.76236 4.91026 4.97732 5.07155 5.12239 5.14342 5.15390 5.25561 5.27837 5.42783 5.48331 5.56483 5.57070 5.61950 5.69752 5.73192 5.84015 5.90540 6.00898 6.29505 6.32504 6.42686 6.58076 6.71692 6.92055 7.26273 7.55586 7.66257 7.70436 8.02467 8.43692 9.55347 10.13747 10.49596 11.47986 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.022722 B = 0.002218 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.973725 B =12619.575765 C =12778.444264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.601 5.601 3 C 0.119 3.881 4 C 0.047 3.953 5 O -0.371 6.371 6 C 0.059 3.941 7 C 0.155 3.845 8 N -0.727 5.727 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.015 4.015 12 N -0.932 5.932 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.292 1.292 17 C 0.499 3.501 18 O -0.543 6.543 19 C 0.091 3.909 20 N -0.587 5.587 21 C 0.082 3.918 22 C 0.044 3.956 23 O -0.371 6.371 24 C 0.053 3.947 25 C 0.494 3.506 26 O -0.539 6.539 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.041 0.959 36 H 0.031 0.969 37 H 0.025 0.975 38 H 0.387 0.613 39 H 0.254 0.746 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.117 0.883 46 H 0.093 0.907 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.409 -22.685 2.728 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.334 5.334 3 C -0.003 4.003 4 C -0.031 4.031 5 O -0.290 6.290 6 C -0.018 4.018 7 C 0.028 3.972 8 N -0.372 5.372 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.211 4.211 12 N -0.580 5.580 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 C 0.286 3.714 18 O -0.421 6.421 19 C -0.035 4.035 20 N -0.320 5.320 21 C -0.041 4.041 22 C -0.033 4.033 23 O -0.290 6.290 24 C -0.027 4.027 25 C 0.282 3.718 26 O -0.416 6.416 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.221 0.779 39 H 0.064 0.936 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.135 0.865 46 H 0.110 0.890 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.474 -22.673 3.247 26.081 hybrid contribution -0.616 1.055 -0.291 1.256 sum 11.858 -21.618 2.956 24.834 Atomic orbital electron populations 1.21968 0.78252 1.04743 1.01899 1.47759 1.07758 1.05466 1.72427 1.21556 0.98280 0.84803 0.95680 1.22835 0.87546 0.98958 0.93788 1.87998 1.27796 1.87485 1.25678 1.22775 0.99269 0.97410 0.82336 1.20678 0.90179 0.91893 0.94493 1.42295 1.17748 1.34849 1.42302 1.19272 0.92624 1.10739 1.14308 0.91229 1.24737 0.98629 0.98946 0.98740 1.69677 1.37723 1.24882 1.25763 0.86130 0.84320 0.78312 0.77503 1.20607 1.21877 1.21936 1.21027 0.88376 0.85760 0.76238 1.90657 1.13825 1.87361 1.50236 1.21434 0.91919 0.84176 1.06014 1.47060 1.45457 1.33041 1.06445 1.22236 0.97664 0.98790 0.85371 1.23051 0.95820 0.92871 0.91531 1.88182 1.93411 1.32374 1.14990 1.22824 0.97993 0.94147 0.87698 1.20997 0.82990 0.84661 0.83197 1.90751 1.56313 1.60852 1.33721 0.92500 0.88447 0.91514 0.89041 0.88830 0.92605 0.93741 0.93407 0.94102 0.95134 0.95716 0.77933 0.93623 0.86419 0.87128 0.90248 0.89388 0.91333 0.86507 0.88959 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 10.06 59.84 0.60 1.43 16 2 N -0.60 -7.58 2.84 -181.58 -0.52 -8.10 16 3 C 0.12 1.55 5.81 -4.04 -0.02 1.53 16 4 C 0.05 0.64 6.28 37.16 0.23 0.88 16 5 O -0.37 -6.19 9.11 -35.23 -0.32 -6.52 16 6 C 0.06 0.97 6.07 37.16 0.23 1.20 16 7 C 0.16 3.11 6.64 -4.05 -0.03 3.09 16 8 N -0.73 -18.53 5.55 -59.92 -0.33 -18.86 16 9 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 10 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 11 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 12 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 13 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 C 0.50 6.51 7.73 -10.98 -0.08 6.43 16 18 O -0.54 -8.60 16.01 5.56 0.09 -8.51 16 19 C 0.09 0.92 4.35 -5.19 -0.02 0.90 16 20 N -0.59 -5.93 2.32 -175.66 -0.41 -6.34 16 21 C 0.08 0.57 6.63 -4.15 -0.03 0.54 16 22 C 0.04 0.27 6.91 37.27 0.26 0.53 16 23 O -0.37 -2.96 10.85 -35.23 -0.38 -3.34 16 24 C 0.05 0.43 6.98 35.84 0.25 0.68 16 25 C 0.49 5.69 7.58 -11.56 -0.09 5.61 16 26 O -0.54 -8.12 16.36 5.56 0.09 -8.03 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 1.34 7.12 -51.93 -0.37 0.97 16 29 H 0.07 0.59 6.44 -51.93 -0.33 0.25 16 30 H 0.09 1.18 8.07 -51.92 -0.42 0.76 16 31 H 0.09 1.20 7.42 -51.93 -0.39 0.82 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.39 10.49 7.67 -40.82 -0.31 10.18 16 39 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.12 1.23 7.20 -51.93 -0.37 0.86 16 41 H 0.11 0.82 7.30 -51.93 -0.38 0.44 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.60 8.13 -51.93 -0.42 0.17 16 44 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 45 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 47 H 0.13 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -36.61 390.65 -6.75 -43.36 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.61 Total: 5.17 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 1.05 Total: 15.47 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.53 Total: -60.81 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.52 Total: -26.40 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.61 -6.75 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677491185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.172 kcal (2) G-P(sol) polarization free energy of solvation -36.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds