Wall clock time and date at job start Tue Mar 31 2020 04:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42906 * 109.47030 * 2 1 4 4 N 1.41595 * 114.00337 * 180.02562 * 3 2 1 5 5 C 1.46506 * 119.99795 * 269.99701 * 4 3 2 6 6 C 1.52993 * 109.47095 * 255.00137 * 5 4 3 7 7 C 1.34772 * 120.00449 * 89.99645 * 4 3 2 8 8 O 1.21281 * 119.99973 * 180.02562 * 7 4 3 9 9 C 1.50699 * 119.99649 * 359.97438 * 7 4 3 10 10 N 1.46503 * 109.46697 * 179.97438 * 9 7 4 11 11 C 1.34780 * 119.99878 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99986 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00256 * 180.02562 * 11 10 9 14 14 C 1.47290 * 125.79121 * 359.97438 * 13 11 10 15 15 C 1.54325 * 107.30599 * 178.92556 * 14 13 11 16 16 C 1.55154 * 102.94303 * 337.81911 * 15 14 13 17 17 O 1.42902 * 111.00280 * 277.42723 * 16 15 14 18 18 C 1.50693 * 111.03939 * 153.59058 * 16 15 14 19 19 H 1.08004 * 120.00401 * 6.33015 * 18 16 15 20 20 C 1.37876 * 120.00383 * 186.33190 * 18 16 15 21 21 N 1.31512 * 119.99646 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00223 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47177 * 59.99714 * 22 20 18 24 24 H 1.48506 * 109.46953 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47102 * 299.99690 * 22 20 18 26 26 C 1.47425 * 125.65138 * 179.97438 * 13 11 10 27 27 H 1.09003 * 109.46575 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46818 * 300.00111 * 1 2 3 29 29 H 1.08994 * 109.46933 * 60.00575 * 1 2 3 30 30 H 1.08999 * 109.47338 * 239.99961 * 2 1 3 31 31 H 1.08997 * 109.47367 * 119.99195 * 2 1 3 32 32 H 1.09004 * 109.46902 * 14.99892 * 5 4 3 33 33 H 1.08999 * 109.47348 * 134.99337 * 5 4 3 34 34 H 1.09000 * 109.47175 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47046 * 299.99667 * 6 5 4 36 36 H 1.09004 * 109.47728 * 59.99893 * 6 5 4 37 37 H 1.09002 * 109.47268 * 60.00832 * 9 7 4 38 38 H 1.08996 * 109.47726 * 299.99908 * 9 7 4 39 39 H 0.96999 * 120.00618 * 0.02562 * 10 9 7 40 40 H 1.09004 * 109.85762 * 59.50172 * 14 13 11 41 41 H 1.08995 * 110.00297 * 298.43119 * 14 13 11 42 42 H 1.09002 * 110.72180 * 219.45147 * 15 14 13 43 43 H 1.08997 * 110.72163 * 96.18354 * 15 14 13 44 44 H 0.96703 * 114.00194 * 173.65090 * 17 16 15 45 45 H 0.97010 * 119.99834 * 180.02562 * 21 20 18 46 46 H 1.09002 * 110.36696 * 85.25946 * 26 13 11 47 47 H 1.08995 * 110.36608 * 323.04783 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4179 1.4592 -0.0006 5 6 4.1486 1.5170 1.2679 6 6 4.6150 2.9516 1.5229 7 6 4.0892 1.5126 -1.1680 8 8 5.2983 1.6080 -1.1684 9 6 3.3376 1.4526 -2.4728 10 7 4.2863 1.5287 -3.5866 11 6 3.8379 1.4935 -4.8572 12 8 2.6462 1.3990 -5.0789 13 7 4.7106 1.5629 -5.8819 14 6 6.1739 1.6795 -5.7608 15 6 6.7529 1.6978 -7.1912 16 6 5.6343 1.0221 -8.0276 17 8 5.7268 -0.4019 -7.9509 18 6 5.6747 1.4866 -9.4605 19 1 6.4809 2.1198 -9.8005 20 6 4.6825 1.1034 -10.3378 21 7 3.7010 0.3320 -9.9240 22 14 4.7329 1.6787 -12.1143 23 1 5.9834 1.1981 -12.7549 24 1 3.5612 1.1323 -12.8450 25 1 4.6945 3.1627 -12.1553 26 6 4.3590 1.5349 -7.3133 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.4940 1.1982 2.0791 33 1 5.0144 0.8567 1.2189 34 1 5.1591 2.9945 2.4664 35 1 5.2696 3.2704 0.7117 36 1 3.7492 3.6120 1.5720 37 1 2.6423 2.2901 -2.5304 38 1 2.7836 0.5157 -2.5303 39 1 5.2370 1.6044 -3.4098 40 1 6.5692 0.8248 -5.2118 41 1 6.4328 2.6036 -5.2442 42 1 7.6751 1.1190 -7.2414 43 1 6.9201 2.7214 -7.5265 44 1 4.9938 -0.8672 -8.3767 45 1 3.0030 0.0621 -10.5413 46 1 4.1059 2.5363 -7.6615 47 1 3.5269 0.8524 -7.4863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001682753114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:03 Heat of formation + Delta-G solvation = -101.431533 kcal Electronic energy + Delta-G solvation = -29183.952525 eV Core-core repulsion = 24983.559000 eV Total energy + Delta-G solvation = -4200.393525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.46869 -39.41580 -37.93973 -37.29064 -34.79852 -34.17655 -33.95258 -32.19177 -31.77435 -30.39553 -29.79284 -27.95275 -27.20800 -24.87202 -23.70807 -23.24266 -22.34672 -20.60647 -19.65815 -19.61765 -18.35047 -17.30566 -17.18733 -16.87888 -16.32167 -15.73112 -15.48186 -15.35500 -15.00818 -14.83075 -14.58066 -14.37056 -14.16436 -13.65318 -13.46906 -13.17986 -12.97777 -12.94703 -12.75438 -12.59854 -12.42973 -12.41928 -12.01679 -11.94149 -11.61786 -11.46573 -11.37710 -10.99071 -10.81590 -10.76871 -10.55477 -10.46194 -10.16942 -10.14322 -9.64485 -9.46952 -9.32070 -8.90020 -8.65769 -8.32244 -7.65700 -6.23773 -4.33467 1.40816 2.11049 2.97670 3.25166 3.30558 3.32536 3.63424 3.74264 4.28967 4.47688 4.55465 4.57317 4.65184 4.68742 4.81465 4.90100 5.00419 5.03276 5.23449 5.28719 5.39381 5.43611 5.47063 5.48770 5.54643 5.71698 5.72654 5.82145 5.88490 6.03198 6.09430 6.15002 6.56545 6.59700 6.75893 6.93287 6.98942 7.01008 7.27441 7.36890 7.61161 7.68166 7.78128 8.07680 8.54497 8.70428 9.12451 9.34039 9.42336 10.83194 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021447 B = 0.002575 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.241575 B =10872.758194 C =11720.065961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.018 3.982 3 O -0.138 6.138 4 N -0.478 5.478 5 C 0.117 3.883 6 C -0.169 4.169 7 C 0.523 3.477 8 O -0.514 6.514 9 C 0.129 3.871 10 N -0.744 5.744 11 C 0.720 3.280 12 O -0.598 6.598 13 N -0.626 5.626 14 C 0.104 3.896 15 C -0.116 4.116 16 C 0.248 3.752 17 O -0.582 6.582 18 C -0.537 4.537 19 H 0.066 0.934 20 C 0.071 3.929 21 N -0.892 5.892 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.114 3.886 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.404 0.596 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.381 0.619 45 H 0.270 0.730 46 H 0.058 0.942 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 0.838 22.579 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.060 4.060 3 O -0.144 6.144 4 N -0.256 5.256 5 C -0.003 4.003 6 C -0.227 4.227 7 C 0.312 3.688 8 O -0.390 6.390 9 C 0.001 3.999 10 N -0.405 5.405 11 C 0.422 3.578 12 O -0.477 6.477 13 N -0.362 5.362 14 C -0.019 4.019 15 C -0.153 4.153 16 C 0.207 3.793 17 O -0.391 6.391 18 C -0.576 4.576 19 H 0.084 0.916 20 C -0.132 4.132 21 N -0.530 5.530 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.008 4.008 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.241 0.759 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.230 0.770 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.131 1.041 22.730 22.853 hybrid contribution -0.326 -0.074 -0.995 1.050 sum -2.457 0.967 21.734 21.894 Atomic orbital electron populations 1.21729 0.91755 1.03318 1.03750 1.23189 0.96401 0.84732 1.01676 1.90696 1.01050 1.25801 1.96836 1.50082 0.95469 1.73688 1.06390 1.21720 0.95859 0.98909 0.83768 1.22132 1.02100 0.95863 1.02635 1.20852 0.87553 0.75274 0.85092 1.90747 1.13106 1.49308 1.85813 1.20715 0.91835 1.04774 0.82598 1.44810 1.10488 1.81636 1.03569 1.15365 0.84711 0.78270 0.79444 1.90885 1.14112 1.58904 1.83767 1.47949 1.06033 1.75232 1.07001 1.21999 0.81066 0.99484 0.99388 1.22589 0.99352 1.01056 0.92347 1.19636 0.88085 0.79365 0.92167 1.86108 1.52002 1.19706 1.81265 1.21415 1.09850 1.32267 0.94047 0.91582 1.25082 0.94617 0.94130 0.99408 1.69716 1.12234 1.34937 1.36161 0.86462 0.77619 0.79096 0.83708 1.20041 1.21122 1.20038 1.23151 1.01812 1.01324 0.74517 0.90131 0.91534 0.90951 0.91888 0.92197 0.89389 0.89699 0.91048 0.91359 0.91960 0.88100 0.88969 0.75886 0.92526 0.92949 0.90754 0.90372 0.76969 0.91976 0.92405 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.02 0.13 7.09 37.16 0.26 0.40 16 3 O -0.14 -1.33 10.48 -11.47 -0.12 -1.45 16 4 N -0.48 -4.88 3.02 -60.29 -0.18 -5.06 16 5 C 0.12 0.92 6.38 -4.04 -0.03 0.89 16 6 C -0.17 -1.30 10.04 37.15 0.37 -0.92 16 7 C 0.52 6.62 7.63 -10.99 -0.08 6.54 16 8 O -0.51 -7.52 14.74 5.56 0.08 -7.44 16 9 C 0.13 1.81 5.46 -5.19 -0.03 1.78 16 10 N -0.74 -12.51 5.49 -66.41 -0.36 -12.88 16 11 C 0.72 15.22 8.49 -86.92 -0.74 14.48 16 12 O -0.60 -14.52 16.60 5.29 0.09 -14.43 16 13 N -0.63 -13.47 3.34 -176.02 -0.59 -14.05 16 14 C 0.10 1.92 6.17 -2.92 -0.02 1.90 16 15 C -0.12 -2.34 6.13 -24.90 -0.15 -2.49 16 16 C 0.25 6.07 0.87 -89.63 -0.08 5.99 16 17 O -0.58 -14.98 13.16 -35.23 -0.46 -15.44 16 18 C -0.54 -14.06 8.27 -34.44 -0.28 -14.34 16 19 H 0.07 1.69 7.79 -52.48 -0.41 1.28 16 20 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 21 N -0.89 -23.96 10.69 55.43 0.59 -23.37 16 22 Si 0.90 20.47 29.54 -169.99 -5.02 15.44 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 C 0.11 2.80 5.38 -2.53 -0.01 2.78 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.51 7.13 -51.93 -0.37 0.14 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.67 7.90 -51.93 -0.41 0.26 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.67 7.34 -51.93 -0.38 0.29 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.09 1.25 7.13 -51.93 -0.37 0.88 16 39 H 0.40 6.45 6.43 -40.82 -0.26 6.18 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 44 H 0.38 10.03 7.56 45.56 0.34 10.37 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.06 1.47 8.03 -51.93 -0.42 1.05 16 47 H 0.09 2.36 7.32 -51.93 -0.38 1.98 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -31.53 388.39 -7.48 -39.01 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -6.86 Total: 15.55 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: -0.50 Total: 18.26 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.54 Total: -55.36 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.41 Total: -38.75 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.53 -7.48 -39.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682753114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.426 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds