Wall clock time and date at job start Tue Mar 31 2020 04:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42906 * 109.47030 * 2 1 4 4 N 1.41595 * 114.00337 * 180.02562 * 3 2 1 5 5 C 1.46506 * 119.99795 * 269.99701 * 4 3 2 6 6 C 1.52993 * 109.47095 * 255.00137 * 5 4 3 7 7 C 1.34772 * 120.00449 * 89.99645 * 4 3 2 8 8 O 1.21281 * 119.99973 * 180.02562 * 7 4 3 9 9 C 1.50699 * 119.99649 * 359.97438 * 7 4 3 10 10 N 1.46503 * 109.46697 * 179.97438 * 9 7 4 11 11 C 1.34780 * 119.99878 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99986 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00256 * 180.02562 * 11 10 9 14 14 C 1.47290 * 125.79121 * 359.97438 * 13 11 10 15 15 C 1.54325 * 107.30599 * 178.92556 * 14 13 11 16 16 C 1.55154 * 102.94303 * 337.81911 * 15 14 13 17 17 O 1.42902 * 111.00280 * 277.42723 * 16 15 14 18 18 C 1.50693 * 111.03939 * 153.59058 * 16 15 14 19 19 H 1.08004 * 120.00401 * 6.33015 * 18 16 15 20 20 C 1.37876 * 120.00383 * 186.33190 * 18 16 15 21 21 N 1.31512 * 119.99646 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00223 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47177 * 59.99714 * 22 20 18 24 24 H 1.48506 * 109.46953 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47102 * 299.99690 * 22 20 18 26 26 C 1.47425 * 125.65138 * 179.97438 * 13 11 10 27 27 H 1.09003 * 109.46575 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46818 * 300.00111 * 1 2 3 29 29 H 1.08994 * 109.46933 * 60.00575 * 1 2 3 30 30 H 1.08999 * 109.47338 * 239.99961 * 2 1 3 31 31 H 1.08997 * 109.47367 * 119.99195 * 2 1 3 32 32 H 1.09004 * 109.46902 * 14.99892 * 5 4 3 33 33 H 1.08999 * 109.47348 * 134.99337 * 5 4 3 34 34 H 1.09000 * 109.47175 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47046 * 299.99667 * 6 5 4 36 36 H 1.09004 * 109.47728 * 59.99893 * 6 5 4 37 37 H 1.09002 * 109.47268 * 60.00832 * 9 7 4 38 38 H 1.08996 * 109.47726 * 299.99908 * 9 7 4 39 39 H 0.96999 * 120.00618 * 0.02562 * 10 9 7 40 40 H 1.09004 * 109.85762 * 59.50172 * 14 13 11 41 41 H 1.08995 * 110.00297 * 298.43119 * 14 13 11 42 42 H 1.09002 * 110.72180 * 219.45147 * 15 14 13 43 43 H 1.08997 * 110.72163 * 96.18354 * 15 14 13 44 44 H 0.96703 * 114.00194 * 173.65090 * 17 16 15 45 45 H 0.97010 * 119.99834 * 180.02562 * 21 20 18 46 46 H 1.09002 * 110.36696 * 85.25946 * 26 13 11 47 47 H 1.08995 * 110.36608 * 323.04783 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4179 1.4592 -0.0006 5 6 4.1486 1.5170 1.2679 6 6 4.6150 2.9516 1.5229 7 6 4.0892 1.5126 -1.1680 8 8 5.2983 1.6080 -1.1684 9 6 3.3376 1.4526 -2.4728 10 7 4.2863 1.5287 -3.5866 11 6 3.8379 1.4935 -4.8572 12 8 2.6462 1.3990 -5.0789 13 7 4.7106 1.5629 -5.8819 14 6 6.1739 1.6795 -5.7608 15 6 6.7529 1.6978 -7.1912 16 6 5.6343 1.0221 -8.0276 17 8 5.7268 -0.4019 -7.9509 18 6 5.6747 1.4866 -9.4605 19 1 6.4809 2.1198 -9.8005 20 6 4.6825 1.1034 -10.3378 21 7 3.7010 0.3320 -9.9240 22 14 4.7329 1.6787 -12.1143 23 1 5.9834 1.1981 -12.7549 24 1 3.5612 1.1323 -12.8450 25 1 4.6945 3.1627 -12.1553 26 6 4.3590 1.5349 -7.3133 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.4940 1.1982 2.0791 33 1 5.0144 0.8567 1.2189 34 1 5.1591 2.9945 2.4664 35 1 5.2696 3.2704 0.7117 36 1 3.7492 3.6120 1.5720 37 1 2.6423 2.2901 -2.5304 38 1 2.7836 0.5157 -2.5303 39 1 5.2370 1.6044 -3.4098 40 1 6.5692 0.8248 -5.2118 41 1 6.4328 2.6036 -5.2442 42 1 7.6751 1.1190 -7.2414 43 1 6.9201 2.7214 -7.5265 44 1 4.9938 -0.8672 -8.3767 45 1 3.0030 0.0621 -10.5413 46 1 4.1059 2.5363 -7.6615 47 1 3.5269 0.8524 -7.4863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001682753114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:01 Heat of formation + Delta-G solvation = -124.880123 kcal Electronic energy + Delta-G solvation = -29184.969332 eV Core-core repulsion = 24983.559000 eV Total energy + Delta-G solvation = -4201.410332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.63117 -40.88023 -39.13517 -38.68795 -36.03818 -35.80174 -35.13450 -34.21420 -32.45131 -31.90253 -30.80852 -29.60696 -28.56192 -26.66887 -24.59169 -24.11586 -23.66979 -21.53637 -21.41117 -21.12526 -19.70427 -19.02599 -18.31533 -18.15632 -17.41869 -17.17366 -16.77382 -16.75337 -16.29712 -16.15691 -15.98157 -15.67888 -15.11000 -14.97776 -14.77242 -14.67952 -14.54215 -14.05526 -13.73548 -13.63782 -13.49761 -13.47395 -13.23240 -13.17235 -13.02497 -12.79712 -12.54088 -12.52744 -12.32226 -12.25891 -12.08346 -12.07911 -11.55195 -11.41764 -11.18073 -11.04537 -10.64361 -10.43801 -10.30310 -10.23187 -9.38387 -8.22366 -6.39591 0.62356 1.11935 1.44632 1.45673 1.53293 1.55907 2.06957 2.39973 2.62527 3.02345 3.03790 3.75047 3.80362 3.98299 4.05348 4.07417 4.12362 4.15306 4.17631 4.21864 4.27630 4.33641 4.39260 4.45266 4.61765 4.68113 4.77187 4.86413 4.94246 4.96365 5.07098 5.10286 5.19896 5.22164 5.25826 5.28002 5.31707 5.38077 5.47066 5.77448 6.02237 6.12611 6.16181 6.66997 6.68576 6.96356 7.29421 7.37000 7.46699 8.82755 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021447 B = 0.002575 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.241575 B =10872.758194 C =11720.065961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.013 3.987 3 O -0.148 6.148 4 N -0.471 5.471 5 C 0.112 3.888 6 C -0.165 4.165 7 C 0.527 3.473 8 O -0.537 6.537 9 C 0.126 3.874 10 N -0.728 5.728 11 C 0.717 3.283 12 O -0.636 6.636 13 N -0.632 5.632 14 C 0.106 3.894 15 C -0.110 4.110 16 C 0.232 3.768 17 O -0.587 6.587 18 C -0.556 4.556 19 H 0.069 0.931 20 C 0.026 3.974 21 N -0.915 5.915 22 Si 0.965 3.035 23 H -0.270 1.270 24 H -0.286 1.286 25 H -0.270 1.270 26 C 0.129 3.871 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.411 0.589 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.373 0.627 45 H 0.269 0.731 46 H 0.042 0.958 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.316 1.236 24.306 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 O -0.153 6.153 4 N -0.248 5.248 5 C -0.006 4.006 6 C -0.223 4.223 7 C 0.316 3.684 8 O -0.414 6.414 9 C -0.001 4.001 10 N -0.388 5.388 11 C 0.418 3.582 12 O -0.518 6.518 13 N -0.368 5.368 14 C -0.016 4.016 15 C -0.147 4.147 16 C 0.192 3.808 17 O -0.395 6.395 18 C -0.594 4.594 19 H 0.088 0.912 20 C -0.175 4.175 21 N -0.554 5.554 22 Si 0.790 3.210 23 H -0.195 1.195 24 H -0.212 1.212 25 H -0.195 1.195 26 C 0.005 3.995 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.249 0.751 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.221 0.779 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.291 1.447 24.530 24.607 hybrid contribution -0.635 -0.219 -1.446 1.594 sum -1.926 1.228 23.084 23.197 Atomic orbital electron populations 1.21751 0.90680 1.04293 1.03530 1.23366 0.97193 0.83710 1.02143 1.90694 1.00376 1.27318 1.96897 1.50072 0.95996 1.72355 1.06412 1.21985 0.96310 0.99145 0.83188 1.22100 1.01747 0.95592 1.02861 1.20471 0.87130 0.75521 0.85255 1.90736 1.13764 1.50716 1.86213 1.20843 0.91568 1.05038 0.82679 1.44629 1.11305 1.80176 1.02650 1.15504 0.84107 0.78095 0.80459 1.90851 1.15822 1.60586 1.84541 1.47901 1.07510 1.75448 1.05921 1.22157 0.78864 1.01794 0.98814 1.22596 0.98359 1.01361 0.92413 1.19865 0.89734 0.78779 0.92422 1.86101 1.51618 1.20600 1.81142 1.21746 1.10019 1.32465 0.95185 0.91242 1.25837 0.94300 0.94235 1.03139 1.69841 1.12642 1.35719 1.37158 0.85505 0.77549 0.78738 0.79202 1.19502 1.21153 1.19487 1.22705 1.00793 0.99242 0.76735 0.88569 0.90608 0.92295 0.92850 0.90273 0.86593 0.89549 0.88720 0.93797 0.92129 0.88133 0.88588 0.75052 0.91246 0.89572 0.89596 0.89095 0.77861 0.92163 0.94010 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.01 0.18 7.09 71.98 0.51 0.69 16 3 O -0.15 -2.61 10.48 -38.77 -0.41 -3.02 16 4 N -0.47 -8.90 3.02 -463.06 -1.40 -10.30 16 5 C 0.11 1.50 6.38 86.38 0.55 2.05 16 6 C -0.16 -2.23 10.04 71.98 0.72 -1.50 16 7 C 0.53 12.84 7.63 87.66 0.67 13.51 16 8 O -0.54 -15.11 14.74 -3.03 -0.04 -15.16 16 9 C 0.13 3.48 5.46 85.63 0.47 3.95 16 10 N -0.73 -24.02 5.49 -482.29 -2.65 -26.67 16 11 C 0.72 30.42 8.49 179.05 1.52 31.94 16 12 O -0.64 -31.68 16.60 -3.98 -0.07 -31.74 16 13 N -0.63 -27.13 3.34 -829.08 -2.77 -29.90 16 14 C 0.11 3.70 6.17 86.68 0.54 4.24 16 15 C -0.11 -4.26 6.13 31.78 0.19 -4.06 16 16 C 0.23 11.42 0.87 -10.15 -0.01 11.41 16 17 O -0.59 -30.58 13.16 -148.98 -1.96 -32.54 16 18 C -0.56 -29.13 8.27 25.60 0.21 -28.92 16 19 H 0.07 3.50 7.79 -2.91 -0.02 3.48 16 20 C 0.03 1.37 5.29 84.65 0.45 1.82 16 21 N -0.91 -50.34 10.69 21.45 0.23 -50.11 16 22 Si 0.96 42.03 29.54 68.60 2.03 44.06 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 C 0.13 6.48 5.38 86.85 0.47 6.95 16 27 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.82 7.13 -2.39 -0.02 0.80 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.17 7.90 -2.39 -0.02 1.16 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.04 0.82 7.34 -2.39 -0.02 0.80 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.10 2.59 7.13 -2.39 -0.02 2.57 16 39 H 0.41 12.54 6.43 -92.71 -0.60 11.94 16 40 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 41 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.09 3.28 8.03 -2.39 -0.02 3.26 16 44 H 0.37 20.31 7.56 -74.06 -0.56 19.75 16 45 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 46 H 0.04 2.19 8.03 -2.39 -0.02 2.17 16 47 H 0.05 2.76 7.32 -2.39 -0.02 2.74 16 Total: -1.00 -68.93 388.39 -0.17 -69.11 By element: Atomic # 1 Polarization: 45.15 SS G_CDS: -0.17 Total: 44.98 kcal Atomic # 6 Polarization: 34.24 SS G_CDS: 7.03 Total: 41.27 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -6.58 Total: -116.97 kcal Atomic # 8 Polarization: -79.98 SS G_CDS: -2.48 Total: -82.45 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -68.93 -0.17 -69.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682753114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.773 kcal (2) G-P(sol) polarization free energy of solvation -68.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds