Wall clock time and date at job start Tue Mar 31 2020 05:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47489 * 2 1 4 4 C 1.52992 * 109.47255 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47202 * 304.99805 * 4 3 2 6 6 O 1.42908 * 109.47270 * 65.00082 * 4 3 2 7 7 C 1.52999 * 109.47115 * 184.99751 * 4 3 2 8 8 H 1.09000 * 109.47156 * 65.00331 * 7 4 3 9 9 C 1.53007 * 109.46926 * 185.00185 * 7 4 3 10 10 O 1.42897 * 109.47496 * 55.00219 * 9 7 4 11 11 N 1.46503 * 109.47219 * 305.00041 * 7 4 3 12 12 C 1.34777 * 119.99666 * 155.00137 * 11 7 4 13 13 O 1.21585 * 120.00330 * 359.97438 * 12 11 7 14 14 N 1.34778 * 119.99592 * 179.97438 * 12 11 7 15 15 C 1.46494 * 120.00087 * 179.97438 * 14 12 11 16 16 C 1.53038 * 109.46172 * 275.03078 * 15 14 12 17 17 C 1.53189 * 109.31578 * 178.59914 * 16 15 14 18 18 N 1.46929 * 108.76587 * 54.65312 * 17 16 15 19 19 C 1.36942 * 120.63239 * 126.36361 * 18 17 16 20 20 H 1.08003 * 119.99599 * 208.02672 * 19 18 17 21 21 C 1.38813 * 119.99875 * 28.01968 * 19 18 17 22 22 N 1.31619 * 119.99966 * 17.52645 * 21 19 18 23 23 Si 1.86800 * 119.99917 * 197.52660 * 21 19 18 24 24 H 1.48495 * 109.47261 * 94.06647 * 23 21 19 25 25 H 1.48499 * 109.46973 * 214.06947 * 23 21 19 26 26 H 1.48500 * 109.46996 * 334.06995 * 23 21 19 27 27 C 1.46927 * 118.73834 * 306.38672 * 18 17 16 28 28 C 1.53034 * 109.46397 * 154.97203 * 15 14 12 29 29 H 1.08996 * 109.47270 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47209 * 300.00470 * 1 2 3 31 31 H 1.09005 * 109.46637 * 59.99891 * 1 2 3 32 32 H 1.08994 * 109.46893 * 239.99479 * 2 1 3 33 33 H 1.09005 * 109.46637 * 120.00109 * 2 1 3 34 34 H 1.09002 * 109.47279 * 59.99573 * 3 2 1 35 35 H 1.09006 * 109.46706 * 300.00234 * 3 2 1 36 36 H 0.96693 * 114.00173 * 59.99662 * 6 4 3 37 37 H 1.09001 * 109.46802 * 175.00416 * 9 7 4 38 38 H 1.09001 * 109.47049 * 294.99639 * 9 7 4 39 39 H 0.96696 * 114.00262 * 180.02562 * 10 9 7 40 40 H 0.97000 * 119.99592 * 334.99714 * 11 7 4 41 41 H 0.97005 * 120.00166 * 359.97438 * 14 12 11 42 42 H 1.09004 * 109.46195 * 34.99820 * 15 14 12 43 43 H 1.09004 * 109.49833 * 298.56218 * 16 15 14 44 44 H 1.08999 * 109.50056 * 58.65896 * 16 15 14 45 45 H 1.08997 * 109.59895 * 294.86624 * 17 16 15 46 46 H 1.09000 * 109.70408 * 174.49991 * 17 16 15 47 47 H 0.97000 * 119.99516 * 179.97438 * 22 21 19 48 48 H 1.09006 * 109.58374 * 293.82137 * 27 18 17 49 49 H 1.08999 * 109.70299 * 173.46421 * 27 18 17 50 50 H 1.09004 * 109.49834 * 301.33948 * 28 15 14 51 51 H 1.08999 * 109.49656 * 61.40306 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 8 4.0469 0.8728 -1.2202 7 6 4.0801 2.8794 0.1263 8 1 3.7914 3.2839 1.0964 9 6 5.6050 2.8920 0.0018 10 8 5.9886 2.2561 -1.2190 11 7 3.4964 3.6996 -0.9381 12 6 3.3699 5.0309 -0.7703 13 8 3.7397 5.5511 0.2645 14 7 2.8334 5.7855 -1.7497 15 6 2.6954 7.2324 -1.5673 16 6 1.3915 7.5305 -0.8235 17 6 1.2676 9.0414 -0.6036 18 7 1.3903 9.7195 -1.9013 19 6 0.4297 10.6002 -2.3220 20 1 0.2564 10.7463 -3.3780 21 6 -0.3213 11.3049 -1.3913 22 7 0.0963 11.4027 -0.1469 23 14 -1.9246 12.1143 -1.9048 24 1 -3.0558 11.1944 -1.6237 25 1 -2.1097 13.3744 -1.1412 26 1 -1.8827 12.4176 -3.3579 27 6 2.5630 9.4344 -2.7392 28 6 2.6726 7.9190 -2.9348 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.7620 1.3470 -2.0132 37 1 5.9610 3.9223 0.0023 38 1 6.0427 2.3560 0.8440 39 1 6.9442 2.2274 -1.3642 40 1 3.2011 3.2844 -1.7635 41 1 2.5387 5.3705 -2.5755 42 1 3.5384 7.6073 -0.9867 43 1 0.5465 7.1782 -1.4151 44 1 1.3983 7.0221 0.1407 45 1 2.0612 9.3803 0.0622 46 1 0.2976 9.2702 -0.1622 47 1 -0.4283 11.8955 0.5033 48 1 3.4624 9.8053 -2.2475 49 1 2.4494 9.9206 -3.7081 50 1 3.5914 7.6872 -3.4736 51 1 1.8158 7.5626 -3.5065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001684056791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:06 Heat of formation + Delta-G solvation = -123.298352 kcal Electronic energy + Delta-G solvation = -29711.670302 eV Core-core repulsion = 25646.161655 eV Total energy + Delta-G solvation = -4065.508647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.37003 -38.77801 -37.30997 -36.46281 -34.42320 -34.33007 -34.11699 -32.15530 -30.56058 -29.89056 -29.12183 -28.10216 -25.00178 -24.16039 -22.45154 -22.18956 -21.45118 -21.11877 -20.44984 -19.48026 -18.42291 -17.51735 -17.08870 -16.62357 -16.14185 -15.76810 -15.41472 -14.99635 -14.84296 -14.57034 -14.11583 -14.05451 -13.76836 -13.67110 -13.64610 -13.48320 -13.02245 -12.98321 -12.56679 -12.36147 -12.15004 -12.11602 -11.84848 -11.49547 -11.45713 -11.12538 -11.05227 -10.93302 -10.91892 -10.73950 -10.37634 -10.37219 -10.21033 -10.10394 -9.98918 -9.81035 -9.74201 -9.54356 -9.13903 -8.61066 -8.38355 -6.67870 -5.77741 -3.20571 2.73303 3.36486 3.38288 3.45170 3.46662 3.97464 4.14362 4.26646 4.41822 4.50095 4.63097 4.67322 4.91789 5.00350 5.09441 5.20742 5.29272 5.30873 5.39632 5.42867 5.47573 5.53553 5.56540 5.59888 5.65017 5.66595 5.81713 5.85645 5.96137 6.05383 6.10497 6.25470 6.37966 6.41057 6.46743 6.60409 6.66971 6.77622 6.90809 6.96138 7.10976 7.39884 7.44964 7.49732 7.69605 7.80680 8.14058 8.45926 8.76496 9.21836 9.85244 10.42064 11.30776 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.016357 B = 0.002599 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.414358 B =10769.343798 C =11769.326010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.152 4.152 4 C 0.106 3.894 5 H 0.107 0.893 6 O -0.534 6.534 7 C 0.134 3.866 8 H 0.106 0.894 9 C 0.068 3.932 10 O -0.552 6.552 11 N -0.739 5.739 12 C 0.703 3.297 13 O -0.590 6.590 14 N -0.739 5.739 15 C 0.169 3.831 16 C -0.146 4.146 17 C 0.174 3.826 18 N -0.592 5.592 19 C -0.255 4.255 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.900 5.900 23 Si 0.902 3.098 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.149 3.851 28 C -0.138 4.138 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.368 0.632 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.370 0.630 40 H 0.391 0.609 41 H 0.390 0.610 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.020 0.980 46 H 0.088 0.912 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.058 0.942 50 H 0.054 0.946 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.740 -23.223 -1.946 24.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.190 4.190 4 C 0.046 3.954 5 H 0.124 0.876 6 O -0.338 6.338 7 C 0.028 3.972 8 H 0.123 0.877 9 C -0.011 4.011 10 O -0.357 6.357 11 N -0.396 5.396 12 C 0.403 3.597 13 O -0.468 6.468 14 N -0.392 5.392 15 C 0.065 3.935 16 C -0.186 4.186 17 C 0.048 3.952 18 N -0.315 5.315 19 C -0.384 4.384 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.022 3.978 28 C -0.178 4.178 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.214 0.786 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.216 0.784 40 H 0.224 0.776 41 H 0.222 0.778 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.038 0.962 46 H 0.106 0.894 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.623 -23.087 -0.485 24.318 hybrid contribution -0.805 0.598 -1.108 1.495 sum 6.818 -22.489 -1.593 23.554 Atomic orbital electron populations 1.21792 0.95934 1.01508 1.01919 1.21449 0.95586 0.96230 1.02394 1.22327 0.95701 0.97674 1.03293 1.22156 0.92557 0.91490 0.89215 0.87573 1.86634 1.76840 1.55636 1.14701 1.21673 0.91375 0.91472 0.92676 0.87667 1.22510 0.95015 0.96596 0.87018 1.86567 1.27447 1.81372 1.40266 1.44996 1.68320 1.06041 1.20210 1.15995 0.78604 0.80935 0.84122 1.90928 1.56218 1.71940 1.27730 1.45516 1.66354 1.09010 1.18289 1.20896 0.99182 0.76253 0.97137 1.22566 0.95896 1.01145 0.99026 1.20751 1.02057 0.85419 0.87022 1.44111 1.20722 1.48317 1.18379 1.19193 1.10942 1.16362 0.91913 0.91625 1.25061 1.00276 0.97940 0.96360 1.70047 1.37450 1.43868 1.03095 0.86277 0.84058 0.78553 0.77883 1.21509 1.21784 1.20399 1.20833 0.90672 0.90797 0.95543 1.22340 1.00618 0.99479 0.95389 0.92842 0.92779 0.92760 0.91403 0.92191 0.90922 0.91506 0.78563 0.93141 0.93351 0.78380 0.77557 0.77777 0.90149 0.92848 0.92882 0.96167 0.89367 0.93601 0.96215 0.92354 0.92697 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.85 5.83 -26.73 -0.16 -1.01 16 3 C -0.15 -1.14 4.58 -26.74 -0.12 -1.27 16 4 C 0.11 0.82 2.83 -26.74 -0.08 0.75 16 5 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 6 O -0.53 -4.51 10.48 -58.58 -0.61 -5.13 16 7 C 0.13 1.28 2.36 -67.93 -0.16 1.12 16 8 H 0.11 1.16 7.58 -51.93 -0.39 0.77 16 9 C 0.07 0.64 6.85 37.16 0.25 0.89 16 10 O -0.55 -4.80 11.13 -58.58 -0.65 -5.45 16 11 N -0.74 -7.53 4.31 -58.67 -0.25 -7.78 16 12 C 0.70 10.28 8.50 -86.92 -0.74 9.54 16 13 O -0.59 -11.22 15.67 5.29 0.08 -11.13 16 14 N -0.74 -10.24 5.08 -58.64 -0.30 -10.54 16 15 C 0.17 2.95 2.42 -67.90 -0.16 2.79 16 16 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 17 C 0.17 4.26 5.31 -3.71 -0.02 4.24 16 18 N -0.59 -14.81 2.99 -172.31 -0.52 -15.33 16 19 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 20 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 21 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 22 N -0.90 -26.39 11.22 55.49 0.62 -25.77 16 23 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.15 3.06 6.51 -3.71 -0.02 3.04 16 28 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.51 7.82 -51.93 -0.41 0.10 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.51 7.31 -51.93 -0.38 0.13 16 36 H 0.37 2.50 7.75 45.56 0.35 2.85 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.37 2.04 9.12 45.56 0.42 2.45 16 40 H 0.39 3.05 6.94 -40.82 -0.28 2.77 16 41 H 0.39 4.24 8.62 -40.82 -0.35 3.89 16 42 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.16 7.94 -51.93 -0.41 0.74 16 50 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 399.47 15.07 6.02 6.02 Total: -1.00 -33.31 399.47 -9.64 -42.94 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.63 Total: 8.78 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.37 Total: 6.73 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.44 Total: -59.42 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -1.18 Total: -21.71 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.31 -9.64 -42.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684056791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.357 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds