Wall clock time and date at job start Tue Mar 31 2020 05:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46885 * 2 1 4 4 C 1.53006 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47135 * 54.99673 * 4 3 2 6 6 O 1.42898 * 109.47071 * 294.99779 * 4 3 2 7 7 C 1.52999 * 109.47204 * 174.99937 * 4 3 2 8 8 H 1.08999 * 109.47130 * 55.51778 * 7 4 3 9 9 C 1.53002 * 109.47367 * 175.51674 * 7 4 3 10 10 O 1.42900 * 109.46767 * 54.97214 * 9 7 4 11 11 N 1.46497 * 109.47185 * 295.51725 * 7 4 3 12 12 C 1.34776 * 119.99861 * 154.99742 * 11 7 4 13 13 O 1.21583 * 120.00345 * 0.02562 * 12 11 7 14 14 N 1.34775 * 120.00107 * 179.97438 * 12 11 7 15 15 C 1.46494 * 120.00519 * 180.02562 * 14 12 11 16 16 C 1.53043 * 109.46145 * 275.02968 * 15 14 12 17 17 C 1.53190 * 109.31360 * 178.59879 * 16 15 14 18 18 N 1.46928 * 108.76921 * 54.65694 * 17 16 15 19 19 C 1.36930 * 120.63163 * 126.35821 * 18 17 16 20 20 H 1.07999 * 120.00519 * 327.94872 * 19 18 17 21 21 C 1.38816 * 119.99580 * 147.94159 * 19 18 17 22 22 N 1.31617 * 120.00299 * 342.22404 * 21 19 18 23 23 Si 1.86807 * 119.99827 * 162.21411 * 21 19 18 24 24 H 1.48503 * 109.46668 * 90.00222 * 23 21 19 25 25 H 1.48498 * 109.47105 * 210.00385 * 23 21 19 26 26 H 1.48497 * 109.47026 * 330.00429 * 23 21 19 27 27 C 1.46930 * 118.73364 * 306.38540 * 18 17 16 28 28 C 1.53039 * 109.46314 * 154.97444 * 15 14 12 29 29 H 1.08996 * 109.47107 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46967 * 299.99761 * 1 2 3 31 31 H 1.09004 * 109.47016 * 59.99862 * 1 2 3 32 32 H 1.08996 * 109.47226 * 120.00372 * 2 1 3 33 33 H 1.09002 * 109.46967 * 240.00239 * 2 1 3 34 34 H 1.09004 * 109.47406 * 299.99899 * 3 2 1 35 35 H 1.08994 * 109.47338 * 60.00092 * 3 2 1 36 36 H 0.96706 * 114.00185 * 295.76096 * 6 4 3 37 37 H 1.08997 * 109.47226 * 174.97794 * 9 7 4 38 38 H 1.09002 * 109.46896 * 294.97659 * 9 7 4 39 39 H 0.96696 * 113.99653 * 180.02562 * 10 9 7 40 40 H 0.96996 * 120.00362 * 335.00473 * 11 7 4 41 41 H 0.97010 * 120.00102 * 0.02562 * 14 12 11 42 42 H 1.09001 * 109.46090 * 34.99715 * 15 14 12 43 43 H 1.08994 * 109.49909 * 298.56349 * 16 15 14 44 44 H 1.09000 * 109.49797 * 58.66175 * 16 15 14 45 45 H 1.09006 * 109.59887 * 294.86481 * 17 16 15 46 46 H 1.09007 * 109.70283 * 174.50803 * 17 16 15 47 47 H 0.97000 * 120.00322 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.58754 * 293.81931 * 27 18 17 49 49 H 1.08994 * 109.70156 * 173.46300 * 27 18 17 50 50 H 1.08992 * 109.49601 * 301.33765 * 28 15 14 51 51 H 1.09004 * 109.49904 * 61.40463 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 8 4.0469 0.8730 1.2201 7 6 4.0800 2.8795 -0.1264 8 1 3.6529 3.4877 0.6710 9 6 5.6059 2.8908 -0.0148 10 8 6.1610 2.0016 -0.9860 11 7 3.6813 3.4273 -1.4253 12 6 3.5540 4.7595 -1.5843 13 8 3.7705 5.5068 -0.6500 14 7 3.1877 5.2636 -2.7794 15 6 3.0498 6.7117 -2.9526 16 6 1.6531 7.1481 -2.5044 17 6 1.5246 8.6673 -2.6539 18 7 1.8569 9.0360 -4.0369 19 6 0.9883 9.7819 -4.7880 20 1 -0.0767 9.6846 -4.6374 21 6 1.4767 10.6631 -5.7428 22 7 2.7344 11.0489 -5.7003 23 14 0.3490 11.3013 -7.0884 24 1 -0.3091 12.5515 -6.6310 25 1 1.1450 11.5795 -8.3108 26 1 -0.6853 10.2803 -7.3930 27 6 3.1387 8.5885 -4.5986 28 6 3.2492 7.0702 -4.4270 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.8163 1.3831 2.0086 37 1 5.9758 3.9005 -0.1931 38 1 5.8996 2.5673 0.9838 39 1 7.1269 1.9579 -0.9725 40 1 3.5088 2.8312 -2.1708 41 1 3.0152 4.6674 -3.5250 42 1 3.8007 7.2226 -2.3498 43 1 0.9023 6.6568 -3.1232 44 1 1.5029 6.8715 -1.4608 45 1 2.2131 9.1617 -1.9685 46 1 0.5028 8.9736 -2.4296 47 1 3.0756 11.6650 -6.3673 48 1 3.9588 9.0764 -4.0718 49 1 3.1836 8.8407 -5.6580 50 1 4.2351 6.7382 -4.7520 51 1 2.4835 6.5791 -5.0276 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001684056792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:11 Heat of formation + Delta-G solvation = -128.081794 kcal Electronic energy + Delta-G solvation = -29458.247664 eV Core-core repulsion = 25392.531591 eV Total energy + Delta-G solvation = -4065.716073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.32829 -38.83148 -37.37036 -36.63211 -34.64622 -34.39610 -34.20552 -32.14132 -30.44902 -29.90222 -29.03055 -28.20213 -24.99001 -24.24561 -22.44252 -22.11473 -21.52944 -21.20183 -20.56828 -19.46487 -18.37496 -17.59019 -17.06798 -16.52439 -16.44073 -15.87719 -15.47351 -15.08420 -14.77651 -14.53154 -14.29351 -14.11309 -13.85196 -13.71255 -13.62520 -13.54570 -13.11357 -12.92232 -12.63186 -12.36589 -12.23616 -12.21520 -11.92812 -11.54860 -11.41890 -11.16192 -11.04585 -10.96357 -10.85570 -10.71048 -10.50607 -10.33158 -10.26133 -10.22836 -10.05518 -9.99080 -9.76585 -9.51791 -9.14956 -8.59190 -8.44268 -6.62692 -5.80464 -3.25108 2.70772 3.33675 3.36731 3.43906 3.46360 3.94294 4.04711 4.24068 4.40150 4.49430 4.55378 4.66197 4.87552 4.94298 5.03240 5.23558 5.28838 5.31904 5.34581 5.41003 5.50335 5.52190 5.53025 5.55964 5.62530 5.71104 5.79387 5.90475 5.95448 6.03195 6.09224 6.30400 6.36371 6.40422 6.50194 6.58052 6.62047 6.82523 6.91159 7.00463 7.11752 7.25414 7.28206 7.38976 7.56019 7.81082 8.14258 8.46769 8.74426 9.20746 9.83455 10.43525 11.28461 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.002401 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.839073 B =11659.191149 C =12518.224891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.153 4.153 4 C 0.108 3.892 5 H 0.109 0.891 6 O -0.550 6.550 7 C 0.138 3.862 8 H 0.100 0.900 9 C 0.067 3.933 10 O -0.568 6.568 11 N -0.736 5.736 12 C 0.704 3.296 13 O -0.594 6.594 14 N -0.738 5.738 15 C 0.170 3.830 16 C -0.139 4.139 17 C 0.148 3.852 18 N -0.591 5.591 19 C -0.257 4.257 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.899 5.899 23 Si 0.900 3.100 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.178 3.822 28 C -0.146 4.146 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.373 0.627 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.378 0.622 40 H 0.396 0.604 41 H 0.391 0.609 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.254 0.746 48 H 0.022 0.978 49 H 0.082 0.918 50 H 0.053 0.947 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 -22.675 10.781 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.191 4.191 4 C 0.048 3.952 5 H 0.127 0.873 6 O -0.354 6.354 7 C 0.031 3.969 8 H 0.118 0.882 9 C -0.012 4.012 10 O -0.373 6.373 11 N -0.393 5.393 12 C 0.404 3.596 13 O -0.472 6.472 14 N -0.391 5.391 15 C 0.066 3.934 16 C -0.179 4.179 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.387 4.387 20 H 0.081 0.919 21 C -0.193 4.193 22 N -0.543 5.543 23 Si 0.729 3.271 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.204 1.204 27 C 0.051 3.949 28 C -0.186 4.186 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.220 0.780 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.224 0.776 40 H 0.230 0.770 41 H 0.224 0.776 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.040 0.960 49 H 0.100 0.900 50 H 0.072 0.928 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.777 -22.370 10.997 25.081 hybrid contribution -0.291 0.433 -0.954 1.087 sum 2.485 -21.937 10.044 24.255 Atomic orbital electron populations 1.21792 0.95931 1.01542 1.01869 1.21443 0.95560 0.96202 1.02448 1.22352 0.95601 0.97808 1.03293 1.22047 0.92415 0.92276 0.88428 0.87318 1.86642 1.80094 1.52933 1.15758 1.21566 0.93107 0.95209 0.86994 0.88229 1.22566 0.93912 0.93131 0.91631 1.86409 1.25397 1.66483 1.59052 1.44920 1.75298 1.05719 1.13409 1.15996 0.77954 0.81836 0.83848 1.90911 1.58147 1.57913 1.40218 1.45535 1.73369 1.09211 1.10973 1.20895 0.97920 0.77030 0.97589 1.22389 0.96181 0.99527 0.99822 1.20884 0.98689 0.90817 0.87527 1.44034 1.19129 1.60179 1.08044 1.19112 0.88700 1.15821 1.15036 0.91916 1.25139 0.96369 0.96476 1.01282 1.70045 1.14506 1.34415 1.35299 0.86349 0.80107 0.78824 0.81784 1.21320 1.21558 1.20438 1.20642 0.87495 0.86577 1.00138 1.22535 1.00228 1.02129 0.93715 0.92808 0.92824 0.92739 0.91432 0.92120 0.90723 0.91540 0.78022 0.92930 0.92657 0.77581 0.76996 0.77597 0.90112 0.92496 0.92763 0.96220 0.92610 0.93594 0.95956 0.89991 0.92785 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.84 5.83 -26.73 -0.16 -1.00 16 3 C -0.15 -1.12 4.86 -26.73 -0.13 -1.25 16 4 C 0.11 0.85 2.34 -26.73 -0.06 0.78 16 5 H 0.11 0.96 7.71 -51.93 -0.40 0.56 16 6 O -0.55 -4.25 12.12 -35.23 -0.43 -4.68 16 7 C 0.14 1.30 2.08 -67.93 -0.14 1.16 16 8 H 0.10 1.04 7.58 -51.93 -0.39 0.65 16 9 C 0.07 0.63 6.57 37.16 0.24 0.88 16 10 O -0.57 -5.19 12.81 -35.23 -0.45 -5.64 16 11 N -0.74 -7.73 4.38 -58.68 -0.26 -7.99 16 12 C 0.70 10.23 8.50 -86.92 -0.74 9.49 16 13 O -0.59 -10.99 15.67 5.29 0.08 -10.90 16 14 N -0.74 -10.34 5.08 -58.64 -0.30 -10.64 16 15 C 0.17 2.96 2.42 -67.89 -0.16 2.80 16 16 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 17 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 18 N -0.59 -14.80 2.97 -172.31 -0.51 -15.31 16 19 C -0.26 -7.04 9.53 -15.06 -0.14 -7.18 16 20 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 21 C 0.01 0.19 4.86 -17.43 -0.08 0.10 16 22 N -0.90 -26.05 11.56 55.49 0.64 -25.41 16 23 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.18 4.17 5.28 -3.71 -0.02 4.15 16 28 C -0.15 -2.66 5.55 -26.61 -0.15 -2.81 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.50 7.82 -51.93 -0.41 0.09 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.59 7.60 -51.93 -0.39 0.20 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.37 1.70 9.03 45.56 0.41 2.11 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.45 7.74 -51.93 -0.40 0.05 16 39 H 0.38 2.09 9.12 45.56 0.42 2.50 16 40 H 0.40 3.39 8.62 -40.82 -0.35 3.03 16 41 H 0.39 4.42 8.62 -40.82 -0.35 4.07 16 42 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.06 1.19 7.93 -51.92 -0.41 0.78 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.08 2.11 6.41 -51.93 -0.33 1.78 16 50 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -33.47 405.06 -9.13 -42.60 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.63 Total: 8.49 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -1.35 Total: 6.91 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.42 Total: -59.34 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.80 Total: -21.22 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.47 -9.13 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684056792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.486 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds