Wall clock time and date at job start Tue Mar 31 2020 05:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47157 * 2 1 4 4 C 1.52998 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47320 * 305.00104 * 4 3 2 6 6 O 1.42902 * 109.46842 * 64.99700 * 4 3 2 7 7 C 1.52997 * 109.47167 * 184.99714 * 4 3 2 8 8 H 1.09003 * 109.47259 * 300.98925 * 7 4 3 9 9 C 1.52997 * 109.47224 * 180.98235 * 7 4 3 10 10 O 1.42893 * 109.47533 * 303.72403 * 9 7 4 11 11 N 1.46502 * 109.46796 * 60.98415 * 7 4 3 12 12 C 1.34787 * 119.99802 * 204.99903 * 11 7 4 13 13 O 1.21582 * 119.99515 * 0.02562 * 12 11 7 14 14 N 1.34776 * 119.99861 * 179.97438 * 12 11 7 15 15 C 1.46502 * 119.99905 * 179.97438 * 14 12 11 16 16 C 1.53042 * 109.46000 * 275.03265 * 15 14 12 17 17 C 1.53192 * 109.31010 * 178.60242 * 16 15 14 18 18 N 1.46929 * 108.76690 * 54.65494 * 17 16 15 19 19 C 1.36932 * 120.63504 * 126.36336 * 18 17 16 20 20 H 1.07991 * 120.00478 * 205.91999 * 19 18 17 21 21 C 1.38817 * 119.99519 * 25.91473 * 19 18 17 22 22 N 1.31619 * 120.00065 * 19.20080 * 21 19 18 23 23 Si 1.86803 * 119.99782 * 199.20121 * 21 19 18 24 24 H 1.48496 * 109.47316 * 94.42263 * 23 21 19 25 25 H 1.48500 * 109.47133 * 214.42764 * 23 21 19 26 26 H 1.48512 * 109.46849 * 334.42406 * 23 21 19 27 27 C 1.46935 * 118.73480 * 306.38361 * 18 17 16 28 28 C 1.53035 * 109.45614 * 154.97503 * 15 14 12 29 29 H 1.09001 * 109.46918 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47550 * 300.00588 * 1 2 3 31 31 H 1.09005 * 109.46720 * 60.00197 * 1 2 3 32 32 H 1.09005 * 109.46720 * 119.99803 * 2 1 3 33 33 H 1.08997 * 109.47550 * 239.99412 * 2 1 3 34 34 H 1.08997 * 109.46929 * 299.99479 * 3 2 1 35 35 H 1.08997 * 109.46985 * 59.99680 * 3 2 1 36 36 H 0.96699 * 113.99698 * 63.45254 * 6 4 3 37 37 H 1.09004 * 109.47225 * 63.72577 * 9 7 4 38 38 H 1.09002 * 109.47086 * 183.72123 * 9 7 4 39 39 H 0.96696 * 114.00644 * 180.02562 * 10 9 7 40 40 H 0.96998 * 120.00277 * 25.00074 * 11 7 4 41 41 H 0.97007 * 119.99994 * 0.02562 * 14 12 11 42 42 H 1.08994 * 109.45534 * 35.00259 * 15 14 12 43 43 H 1.09006 * 109.49129 * 298.56504 * 16 15 14 44 44 H 1.08995 * 109.49651 * 58.66075 * 16 15 14 45 45 H 1.09004 * 109.59684 * 294.86545 * 17 16 15 46 46 H 1.08996 * 109.70013 * 174.50315 * 17 16 15 47 47 H 0.97000 * 119.99353 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.58382 * 293.82234 * 27 18 17 49 49 H 1.08997 * 109.69879 * 173.46803 * 27 18 17 50 50 H 1.08997 * 109.50343 * 301.33424 * 28 15 14 51 51 H 1.09003 * 109.50125 * 61.43491 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 8 4.0468 0.8728 -1.2201 7 6 4.0800 2.8795 0.1263 8 1 3.7026 3.4731 -0.7064 9 6 5.6098 2.8817 0.1023 10 8 6.1037 2.0339 1.1411 11 7 3.6106 3.4555 1.3889 12 6 3.4819 4.7915 1.5135 13 8 3.7549 5.5183 0.5778 14 7 3.0495 5.3214 2.6748 15 6 2.9102 6.7734 2.8104 16 6 4.2588 7.3805 3.2041 17 6 4.1175 8.9022 3.3108 18 7 3.0225 9.2112 4.2405 19 6 3.2264 10.0473 5.3056 20 1 2.6100 9.9583 6.1878 21 6 4.2258 11.0092 5.2513 22 7 4.7181 11.3819 4.0889 23 14 4.8718 11.7748 6.8280 24 1 6.0797 11.0374 7.2777 25 1 5.2231 13.1962 6.5803 26 1 3.8258 11.6994 7.8796 27 6 1.7045 8.6056 4.0058 28 6 1.8729 7.0873 3.8909 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.8059 1.3766 -2.0096 37 1 5.9586 2.5146 -0.8630 38 1 5.9741 3.8971 0.2580 39 1 7.0686 1.9874 1.1855 40 1 3.3924 2.8756 2.1352 41 1 2.8313 4.7414 3.4211 42 1 2.5847 7.1972 1.8604 43 1 4.5729 6.9756 4.1662 44 1 5.0027 7.1366 2.4457 45 1 3.8916 9.3181 2.3289 46 1 5.0466 9.3321 3.6849 47 1 5.4161 12.0543 4.0511 48 1 1.2819 8.9974 3.0806 49 1 1.0400 8.8377 4.8381 50 1 0.9185 6.6349 3.6215 51 1 2.2097 6.6853 4.8464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001684056793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:15 Heat of formation + Delta-G solvation = -125.538003 kcal Electronic energy + Delta-G solvation = -29505.364135 eV Core-core repulsion = 25439.758369 eV Total energy + Delta-G solvation = -4065.605765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.31035 -38.81577 -37.37420 -36.61741 -34.64742 -34.40504 -34.18998 -32.14782 -30.42889 -29.84744 -29.05331 -28.19979 -25.00005 -24.23290 -22.37023 -22.17739 -21.52390 -21.18854 -20.56322 -19.45524 -18.34990 -17.56751 -17.02575 -16.59349 -16.41760 -15.91527 -15.31961 -15.15568 -14.81165 -14.54927 -14.25322 -14.01191 -13.88176 -13.71045 -13.67391 -13.47699 -13.06002 -12.98858 -12.56033 -12.38189 -12.23353 -12.22338 -11.92610 -11.56422 -11.46477 -11.12892 -11.05094 -10.98289 -10.90723 -10.72838 -10.38915 -10.31587 -10.23227 -10.18870 -10.04388 -9.94837 -9.73445 -9.53284 -9.12765 -8.60436 -8.36869 -6.70710 -5.77592 -3.17889 2.72013 3.36581 3.38819 3.45811 3.47226 3.95259 4.08070 4.24341 4.40943 4.50647 4.56149 4.65421 4.86808 4.93531 5.04684 5.27052 5.28414 5.30198 5.34258 5.40803 5.48002 5.51311 5.52805 5.56479 5.66667 5.71180 5.77436 5.85767 5.94844 6.01425 6.10811 6.25458 6.38438 6.42513 6.47279 6.61223 6.66640 6.78059 6.91740 6.96259 7.12819 7.25898 7.40789 7.42589 7.70270 7.81021 8.15822 8.44900 8.77054 9.21669 9.85845 10.41544 11.30932 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.020710 B = 0.002414 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.680952 B =11598.248785 C =12400.368486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.152 4.152 4 C 0.107 3.893 5 H 0.110 0.890 6 O -0.551 6.551 7 C 0.139 3.861 8 H 0.100 0.900 9 C 0.066 3.934 10 O -0.569 6.569 11 N -0.736 5.736 12 C 0.704 3.296 13 O -0.592 6.592 14 N -0.738 5.738 15 C 0.169 3.831 16 C -0.145 4.145 17 C 0.172 3.828 18 N -0.593 5.593 19 C -0.253 4.253 20 H 0.067 0.933 21 C 0.001 3.999 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.149 3.851 28 C -0.138 4.138 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.373 0.627 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.378 0.622 40 H 0.396 0.604 41 H 0.390 0.610 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.020 0.980 46 H 0.091 0.909 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.058 0.942 50 H 0.055 0.945 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 -23.527 -8.349 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.190 4.190 4 C 0.047 3.953 5 H 0.128 0.872 6 O -0.355 6.355 7 C 0.032 3.968 8 H 0.117 0.883 9 C -0.013 4.013 10 O -0.374 6.374 11 N -0.393 5.393 12 C 0.404 3.596 13 O -0.470 6.470 14 N -0.392 5.392 15 C 0.065 3.935 16 C -0.186 4.186 17 C 0.046 3.954 18 N -0.316 5.316 19 C -0.382 4.382 20 H 0.085 0.915 21 C -0.198 4.198 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.022 3.978 28 C -0.178 4.178 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.220 0.780 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.225 0.775 40 H 0.230 0.770 41 H 0.223 0.777 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.038 0.962 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.751 -23.209 -8.744 25.083 hybrid contribution 0.626 0.467 1.012 1.278 sum -3.125 -22.742 -7.733 24.223 Atomic orbital electron populations 1.21789 0.95954 1.01536 1.01820 1.21450 0.95534 0.96233 1.02483 1.22344 0.95646 0.97757 1.03256 1.22066 0.92438 0.92365 0.88427 0.87219 1.86639 1.79588 1.53579 1.15696 1.21555 0.92556 0.94765 0.87919 0.88255 1.22573 0.94419 0.93920 0.90436 1.86390 1.26384 1.69379 1.55289 1.44917 1.72983 1.05610 1.15830 1.15989 0.78262 0.81717 0.83678 1.90922 1.57226 1.59429 1.39387 1.45514 1.71244 1.09026 1.13371 1.20904 0.96581 0.76599 0.99398 1.22560 0.95590 1.00487 0.99961 1.20791 0.93963 0.88116 0.92572 1.44138 1.04235 1.52815 1.30377 1.19206 1.16874 1.09503 0.92649 0.91511 1.25004 1.01582 0.96766 0.96450 1.70062 1.29930 1.32064 1.22439 0.86285 0.79125 0.78219 0.83218 1.21528 1.21820 1.20412 1.20827 0.89142 0.89250 0.98613 1.22341 0.97068 1.00412 0.98024 0.92808 0.92778 0.92837 0.92102 0.91420 0.91552 0.90753 0.77969 0.92613 0.92822 0.77506 0.77036 0.77706 0.90115 0.92821 0.92925 0.96207 0.89103 0.93614 0.96204 0.92356 0.92682 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.82 5.83 -26.73 -0.16 -0.98 16 3 C -0.15 -1.09 4.84 -26.73 -0.13 -1.22 16 4 C 0.11 0.84 2.40 -26.73 -0.06 0.78 16 5 H 0.11 0.98 7.62 -51.93 -0.40 0.59 16 6 O -0.55 -4.32 12.24 -35.23 -0.43 -4.75 16 7 C 0.14 1.35 2.10 -67.93 -0.14 1.21 16 8 H 0.10 1.06 7.58 -51.93 -0.39 0.67 16 9 C 0.07 0.66 6.63 37.16 0.25 0.91 16 10 O -0.57 -5.51 12.78 -35.23 -0.45 -5.96 16 11 N -0.74 -7.88 4.26 -58.67 -0.25 -8.13 16 12 C 0.70 10.44 8.50 -86.91 -0.74 9.70 16 13 O -0.59 -11.27 15.67 5.29 0.08 -11.19 16 14 N -0.74 -10.39 5.08 -58.64 -0.30 -10.69 16 15 C 0.17 2.96 2.42 -67.89 -0.16 2.80 16 16 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 17 C 0.17 4.23 5.34 -3.71 -0.02 4.21 16 18 N -0.59 -14.85 3.00 -172.31 -0.52 -15.36 16 19 C -0.25 -6.92 9.60 -15.06 -0.14 -7.06 16 20 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 21 C 0.00 0.02 4.88 -17.43 -0.09 -0.07 16 22 N -0.90 -26.44 11.17 55.49 0.62 -25.82 16 23 Si 0.90 21.74 29.60 -169.99 -5.03 16.71 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.15 3.06 6.51 -3.71 -0.02 3.03 16 28 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.49 7.82 -51.93 -0.41 0.08 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.56 7.37 -51.93 -0.38 0.18 16 36 H 0.37 1.75 9.04 45.56 0.41 2.16 16 37 H 0.06 0.49 7.77 -51.93 -0.40 0.08 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.38 2.34 9.12 45.56 0.42 2.75 16 40 H 0.40 3.43 8.46 -40.82 -0.35 3.08 16 41 H 0.39 4.35 8.62 -40.82 -0.35 4.00 16 42 H 0.08 1.60 7.57 -51.93 -0.39 1.21 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 2.50 5.95 -51.93 -0.31 2.19 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 50 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 404.02 15.07 6.09 6.09 Total: -1.00 -33.86 404.02 -9.12 -42.99 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -7.59 Total: 8.98 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -1.35 Total: 7.14 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.44 Total: -60.00 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.80 Total: -21.90 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.86 -9.12 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684056793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.550 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds