Wall clock time and date at job start Tue Mar 31 2020 05:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47322 * 2 1 4 4 C 1.52993 * 109.47326 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47138 * 54.99340 * 4 3 2 6 6 O 1.42909 * 109.46782 * 294.99968 * 4 3 2 7 7 C 1.53001 * 109.47434 * 175.00018 * 4 3 2 8 8 H 1.08998 * 109.46779 * 299.99731 * 7 4 3 9 9 C 1.53002 * 109.47414 * 179.97438 * 7 4 3 10 10 O 1.42902 * 109.46603 * 304.99999 * 9 7 4 11 11 N 1.46507 * 109.47143 * 59.99792 * 7 4 3 12 12 C 1.34775 * 119.99719 * 205.00257 * 11 7 4 13 13 O 1.21584 * 119.99996 * 0.02562 * 12 11 7 14 14 N 1.34772 * 119.99801 * 179.97438 * 12 11 7 15 15 C 1.46504 * 120.00289 * 179.97438 * 14 12 11 16 16 C 1.53041 * 109.45836 * 274.75403 * 15 14 12 17 17 C 1.53191 * 109.30946 * 178.59531 * 16 15 14 18 18 N 1.46927 * 108.76528 * 54.65690 * 17 16 15 19 19 C 1.36941 * 120.63133 * 126.35573 * 18 17 16 20 20 H 1.07996 * 119.99918 * 331.86471 * 19 18 17 21 21 C 1.38814 * 119.99769 * 151.86008 * 19 18 17 22 22 N 1.31619 * 119.99879 * 343.07288 * 21 19 18 23 23 Si 1.86801 * 119.99814 * 163.06843 * 21 19 18 24 24 H 1.48503 * 109.46878 * 90.00484 * 23 21 19 25 25 H 1.48498 * 109.47264 * 210.00209 * 23 21 19 26 26 H 1.48492 * 109.47146 * 330.00418 * 23 21 19 27 27 C 1.46924 * 118.73995 * 306.38448 * 18 17 16 28 28 C 1.53033 * 109.46071 * 154.69452 * 15 14 12 29 29 H 1.08997 * 109.47005 * 60.00221 * 1 2 3 30 30 H 1.08998 * 109.47581 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47103 * 300.00091 * 1 2 3 32 32 H 1.09002 * 109.47032 * 239.99490 * 2 1 3 33 33 H 1.09007 * 109.46614 * 120.00165 * 2 1 3 34 34 H 1.09002 * 109.47483 * 59.99766 * 3 2 1 35 35 H 1.09007 * 109.47050 * 300.00366 * 3 2 1 36 36 H 0.96700 * 113.99766 * 299.99389 * 6 4 3 37 37 H 1.09002 * 109.47032 * 64.99471 * 9 7 4 38 38 H 1.08995 * 109.47142 * 184.99890 * 9 7 4 39 39 H 0.96705 * 113.99415 * 179.97438 * 10 9 7 40 40 H 0.96997 * 119.99868 * 25.00061 * 11 7 4 41 41 H 0.97003 * 120.00280 * 359.72776 * 14 12 11 42 42 H 1.08997 * 109.45515 * 34.72502 * 15 14 12 43 43 H 1.09001 * 109.49892 * 298.56021 * 16 15 14 44 44 H 1.09002 * 109.49896 * 58.66227 * 16 15 14 45 45 H 1.09001 * 109.60265 * 294.86760 * 17 16 15 46 46 H 1.09007 * 109.70347 * 174.50327 * 17 16 15 47 47 H 0.97004 * 119.99383 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.58197 * 293.82105 * 27 18 17 49 49 H 1.08998 * 109.70789 * 173.46771 * 27 18 17 50 50 H 1.08994 * 109.50579 * 301.34054 * 28 15 14 51 51 H 1.09006 * 109.49516 * 61.43950 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9329 0.8530 -0.8426 6 8 4.0468 0.8728 1.2202 7 6 4.0800 2.8794 -0.1264 8 1 3.7163 3.3138 -1.0575 9 6 5.6100 2.8795 -0.1264 10 8 6.0863 2.2058 1.0405 11 7 3.5921 3.6715 1.0054 12 6 3.4634 5.0079 0.8869 13 8 3.7517 5.5559 -0.1595 14 7 3.0141 5.7365 1.9278 15 6 2.8747 7.1892 1.7992 16 6 4.2162 7.8592 2.1052 17 6 4.0756 9.3752 1.9357 18 7 2.9627 9.8433 2.7730 19 6 3.1469 10.8565 3.6757 20 1 4.1197 11.0168 4.1165 21 6 2.0832 11.6775 4.0240 22 7 1.0054 11.7140 3.2693 23 14 2.1813 12.7305 5.5638 24 1 2.7668 14.0521 5.2232 25 1 0.8179 12.9218 6.1204 26 1 3.0372 12.0549 6.5717 27 6 1.6487 9.2033 2.6238 28 6 1.8164 7.6891 2.7852 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.7618 1.3472 2.0132 37 1 5.9734 2.3656 -1.0163 38 1 5.9733 3.9071 -0.1264 39 1 7.0503 2.1673 1.1064 40 1 3.3617 3.2342 1.8400 41 1 2.7796 5.2987 2.7610 42 1 2.5691 7.4360 0.7825 43 1 4.5103 7.6333 3.1302 44 1 4.9749 7.4853 1.4177 45 1 3.8703 9.6089 0.8910 46 1 4.9979 9.8668 2.2456 47 1 0.2620 12.2875 3.5129 48 1 1.2454 9.4229 1.6352 49 1 0.9680 9.5790 3.3878 50 1 0.8669 7.1941 2.5819 51 1 2.1334 7.4648 3.8038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001684056794.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:20 Heat of formation + Delta-G solvation = -123.442469 kcal Electronic energy + Delta-G solvation = -29626.069289 eV Core-core repulsion = 25560.554393 eV Total energy + Delta-G solvation = -4065.514896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.38927 -38.78993 -37.31541 -36.48619 -34.42931 -34.37896 -34.11086 -32.15482 -30.61314 -29.94068 -29.10069 -28.09129 -25.00832 -24.17940 -22.51612 -22.13988 -21.47251 -21.12942 -20.48145 -19.47078 -18.44446 -17.55473 -17.12166 -16.61080 -16.15698 -15.78487 -15.29734 -15.15473 -14.82652 -14.60418 -14.06945 -14.06221 -13.79514 -13.73623 -13.64257 -13.52784 -13.07866 -12.94811 -12.57658 -12.34960 -12.19086 -12.15023 -11.86752 -11.50134 -11.44860 -11.12891 -11.07079 -10.96805 -10.84727 -10.70526 -10.49443 -10.38892 -10.25955 -10.06548 -10.02810 -9.85491 -9.74556 -9.52702 -9.16638 -8.60330 -8.43420 -6.67721 -5.79535 -3.21423 2.71373 3.34038 3.37172 3.44201 3.46522 3.95967 4.13563 4.23743 4.40377 4.49672 4.60005 4.64418 4.88812 4.99444 5.05920 5.18729 5.27210 5.33927 5.37528 5.42939 5.49901 5.51630 5.55007 5.56858 5.61035 5.63417 5.78116 5.90640 5.93080 6.01886 6.09404 6.29843 6.36597 6.38563 6.50472 6.58271 6.61851 6.81151 6.89486 6.99637 7.10318 7.32422 7.41711 7.49768 7.62216 7.79476 8.12740 8.44882 8.74012 9.21048 9.84363 10.41525 11.29475 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.019642 B = 0.002423 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.203777 B =11554.310228 C =12335.580723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.153 4.153 4 C 0.107 3.893 5 H 0.107 0.893 6 O -0.534 6.534 7 C 0.135 3.865 8 H 0.105 0.895 9 C 0.067 3.933 10 O -0.552 6.552 11 N -0.739 5.739 12 C 0.704 3.296 13 O -0.592 6.592 14 N -0.738 5.738 15 C 0.169 3.831 16 C -0.138 4.138 17 C 0.147 3.853 18 N -0.593 5.593 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.175 3.825 28 C -0.146 4.146 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.366 0.634 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.371 0.629 40 H 0.390 0.610 41 H 0.391 0.609 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.254 0.746 48 H 0.021 0.979 49 H 0.091 0.909 50 H 0.053 0.947 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.451 -24.245 -5.364 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.191 4.191 4 C 0.047 3.953 5 H 0.124 0.876 6 O -0.338 6.338 7 C 0.029 3.971 8 H 0.123 0.877 9 C -0.013 4.013 10 O -0.356 6.356 11 N -0.396 5.396 12 C 0.404 3.596 13 O -0.471 6.471 14 N -0.391 5.391 15 C 0.065 3.935 16 C -0.179 4.179 17 C 0.020 3.980 18 N -0.316 5.316 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.048 3.952 28 C -0.186 4.186 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.213 0.787 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.217 0.783 40 H 0.225 0.775 41 H 0.223 0.777 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.039 0.961 49 H 0.109 0.891 50 H 0.072 0.928 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.188 -24.084 -6.623 25.181 hybrid contribution 0.103 0.728 1.691 1.844 sum 3.292 -23.356 -4.932 24.097 Atomic orbital electron populations 1.21788 0.95946 1.01531 1.01863 1.21450 0.95572 0.96226 1.02444 1.22342 0.95753 0.97708 1.03261 1.22156 0.92452 0.91520 0.89200 0.87563 1.86658 1.76854 1.55595 1.14691 1.21655 0.92348 0.91937 0.91200 0.87686 1.22530 0.94417 0.96280 0.88058 1.86589 1.25824 1.79485 1.43701 1.44983 1.72372 1.05815 1.16397 1.15999 0.78293 0.80972 0.84347 1.90914 1.57203 1.70667 1.28280 1.45541 1.70329 1.08761 1.14470 1.20906 0.96166 0.75760 1.00637 1.22378 0.96301 0.98499 1.00679 1.20879 0.92304 0.90737 0.94030 1.44091 1.05859 1.38880 1.42722 1.19177 0.96697 1.06433 1.15795 0.91696 1.25053 0.97979 0.97584 0.99088 1.70028 1.07156 1.40921 1.36691 0.86307 0.76856 0.80369 0.83303 1.21390 1.21572 1.20521 1.20732 0.88442 0.85462 1.00520 1.22544 0.96508 1.01366 0.98195 0.92824 0.92823 0.92759 0.92174 0.91366 0.91464 0.90969 0.78684 0.93381 0.93072 0.78329 0.77548 0.77661 0.90106 0.92484 0.92827 0.96202 0.92627 0.93616 0.96132 0.89058 0.92816 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.81 5.83 -26.73 -0.16 -0.96 16 3 C -0.15 -1.08 4.66 -26.74 -0.12 -1.21 16 4 C 0.11 0.81 2.78 -26.73 -0.07 0.73 16 5 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 6 O -0.53 -4.50 10.69 -57.93 -0.62 -5.12 16 7 C 0.14 1.26 2.30 -67.93 -0.16 1.10 16 8 H 0.11 1.11 7.58 -51.93 -0.39 0.72 16 9 C 0.07 0.63 6.85 37.16 0.25 0.88 16 10 O -0.55 -4.99 11.37 -57.93 -0.66 -5.64 16 11 N -0.74 -7.43 4.38 -58.67 -0.26 -7.69 16 12 C 0.70 10.11 8.50 -86.92 -0.74 9.37 16 13 O -0.59 -10.95 15.66 5.29 0.08 -10.87 16 14 N -0.74 -10.23 5.08 -58.64 -0.30 -10.53 16 15 C 0.17 2.95 2.42 -67.89 -0.16 2.79 16 16 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 17 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16 18 N -0.59 -14.84 2.99 -172.31 -0.52 -15.35 16 19 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 20 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 21 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 22 N -0.90 -26.06 11.19 55.49 0.62 -25.44 16 23 Si 0.90 21.52 29.59 -169.99 -5.03 16.50 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.18 4.10 5.30 -3.71 -0.02 4.08 16 28 C -0.15 -2.66 5.55 -26.61 -0.15 -2.81 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.49 7.82 -51.93 -0.41 0.09 16 34 H 0.07 0.49 7.61 -51.93 -0.40 0.09 16 35 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.37 2.45 7.51 45.56 0.34 2.80 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.37 2.17 9.12 45.56 0.42 2.58 16 40 H 0.39 3.03 6.97 -40.82 -0.28 2.75 16 41 H 0.39 4.34 8.62 -40.82 -0.35 3.99 16 42 H 0.08 1.60 7.57 -51.93 -0.39 1.21 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 50 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 400.01 15.07 6.03 6.03 Total: -1.00 -32.99 400.01 -9.67 -42.66 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -7.66 Total: 8.73 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.36 Total: 6.73 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.45 Total: -59.01 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.20 Total: -21.64 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.99 -9.67 -42.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684056794.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.785 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds