Wall clock time and date at job start Tue Mar 31 2020 05:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34634 * 116.99924 * 2 1 4 4 O 1.21517 * 119.99952 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00405 * 180.02562 * 3 2 1 6 6 C 1.46498 * 120.00360 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.47234 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99890 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00318 * 179.97438 * 7 6 5 10 10 C 1.46932 * 120.62675 * 359.97438 * 9 7 6 11 11 C 1.53194 * 108.77412 * 233.63105 * 10 9 7 12 12 C 1.53042 * 109.31046 * 305.36365 * 11 10 9 13 13 C 1.53045 * 109.53568 * 61.36850 * 12 11 10 14 14 H 1.09000 * 109.52100 * 58.60518 * 13 12 11 15 15 N 1.46499 * 109.49445 * 178.67813 * 13 12 11 16 16 C 1.36938 * 119.99853 * 59.84027 * 15 13 12 17 17 H 1.08001 * 120.00041 * 43.36842 * 16 15 13 18 18 C 1.38818 * 120.00054 * 223.36877 * 16 15 13 19 19 N 1.31620 * 119.99824 * 209.73035 * 18 16 15 20 20 Si 1.86795 * 120.00171 * 29.72434 * 18 16 15 21 21 H 1.48503 * 109.46798 * 95.86033 * 20 18 16 22 22 H 1.48490 * 109.47357 * 215.86593 * 20 18 16 23 23 H 1.48507 * 109.47044 * 335.86844 * 20 18 16 24 24 C 1.46498 * 120.00018 * 239.83956 * 15 13 12 25 25 C 1.53003 * 109.46924 * 276.64487 * 24 15 13 26 26 O 1.42897 * 109.46772 * 64.13237 * 25 24 15 27 27 C 1.46917 * 120.63321 * 180.02562 * 9 7 6 28 28 H 1.09006 * 109.47001 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47133 * 299.99959 * 1 2 3 30 30 H 1.08994 * 109.47679 * 60.00259 * 1 2 3 31 31 H 0.96999 * 119.99501 * 359.97438 * 5 3 2 32 32 H 1.09005 * 109.46894 * 59.99846 * 6 5 3 33 33 H 1.08998 * 109.47145 * 299.99776 * 6 5 3 34 34 H 1.08999 * 109.58363 * 353.41733 * 10 9 7 35 35 H 1.08997 * 109.58234 * 113.83951 * 10 9 7 36 36 H 1.08995 * 109.49517 * 65.32105 * 11 10 9 37 37 H 1.08995 * 109.49397 * 185.38222 * 11 10 9 38 38 H 1.08993 * 109.46134 * 301.34786 * 12 11 10 39 39 H 1.09001 * 109.45641 * 181.38719 * 12 11 10 40 40 H 0.96995 * 119.99929 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.47061 * 156.65011 * 24 15 13 42 42 H 1.08994 * 109.47448 * 36.64993 * 24 15 13 43 43 H 1.09001 * 109.46892 * 184.13085 * 25 24 15 44 44 H 1.08991 * 109.47512 * 304.13316 * 25 24 15 45 45 H 0.96705 * 114.00477 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.58947 * 6.58730 * 27 9 7 47 47 H 1.08996 * 109.70781 * 246.22716 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4013 2.2187 -0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0742 2.5756 -0.0011 7 6 5.5681 2.3782 -0.0010 8 8 6.0317 1.2575 -0.0009 9 7 6.3892 3.4470 -0.0019 10 6 5.8425 4.8109 -0.0037 11 6 6.4577 5.5872 -1.1723 12 6 7.9837 5.5218 -1.0758 13 6 8.4405 4.0642 -1.1704 14 1 8.0981 3.6355 -2.1122 15 7 9.9031 4.0053 -1.1096 16 6 10.5628 4.4906 -0.0121 17 1 10.1935 4.2742 0.9794 18 6 11.7063 5.2608 -0.1741 19 7 12.6455 5.2464 0.7479 20 14 11.9122 6.3176 -1.7006 21 1 11.4706 7.7044 -1.4057 22 1 13.3406 6.3285 -2.1061 23 1 11.0887 5.7599 -2.8035 24 6 10.6598 3.4271 -2.2228 25 6 10.7029 1.9049 -2.0740 26 8 9.3787 1.3783 -2.1802 27 6 7.8477 3.2706 -0.0024 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 3.9374 0.4568 -0.0005 32 1 3.7816 3.1328 0.8889 33 1 3.7810 3.1323 -0.8911 34 1 4.7597 4.7703 -0.1217 35 1 6.0915 5.3055 0.9351 36 1 6.1334 5.1444 -2.1140 37 1 6.1342 6.6271 -1.1287 38 1 8.3056 5.9421 -0.1231 39 1 8.4240 6.0941 -1.8923 40 1 13.4447 5.7843 0.6346 41 1 11.6759 3.8218 -2.2153 42 1 10.1762 3.6866 -3.1645 43 1 11.3268 1.4805 -2.8606 44 1 11.1196 1.6466 -1.1006 45 1 9.3300 0.4162 -2.0955 46 1 8.0880 2.2139 -0.1197 47 1 8.2627 3.6377 0.9363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689201957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:35 Heat of formation + Delta-G solvation = -132.672642 kcal Electronic energy + Delta-G solvation = -29756.983458 eV Core-core repulsion = 25555.235216 eV Total energy + Delta-G solvation = -4201.748241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -40.75239 -39.93065 -37.82780 -36.79879 -36.38491 -34.81973 -34.73858 -32.34246 -31.58174 -30.35433 -28.90173 -27.57784 -26.92085 -24.76225 -24.03792 -22.35957 -21.63660 -21.18059 -19.99037 -19.39756 -18.47790 -17.25466 -16.96980 -16.83857 -16.59073 -16.39806 -15.86990 -15.58318 -14.93404 -14.85734 -14.43449 -14.22475 -14.13344 -13.91697 -13.52796 -13.42607 -13.16491 -12.96724 -12.93608 -12.49915 -12.31975 -12.31603 -12.26143 -11.91291 -11.55767 -11.02093 -10.93495 -10.88267 -10.76170 -10.69840 -10.37693 -10.32118 -10.18729 -9.92809 -9.74683 -9.54865 -9.51576 -9.25334 -8.57241 -8.36843 -6.71745 -6.12539 -3.50998 1.87465 2.55589 2.65981 3.14672 3.30439 3.43761 3.48358 4.07842 4.36487 4.48104 4.78705 4.87611 4.94873 4.99173 5.04266 5.08437 5.10894 5.19561 5.22214 5.28049 5.40557 5.66923 5.77055 5.88694 5.91758 5.99785 6.04885 6.09910 6.12495 6.18109 6.24266 6.33017 6.51275 6.58473 6.66355 6.73269 6.76002 7.01785 7.07863 7.18234 7.56596 8.00021 8.08853 8.18950 8.24059 8.39833 8.96560 9.64835 10.13693 11.02753 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021877 B = 0.002951 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.587305 B = 9485.731592 C =10116.800314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.650 3.350 4 O -0.576 6.576 5 N -0.695 5.695 6 C 0.119 3.881 7 C 0.507 3.493 8 O -0.539 6.539 9 N -0.596 5.596 10 C 0.103 3.897 11 C -0.132 4.132 12 C -0.132 4.132 13 C 0.178 3.822 14 H 0.059 0.941 15 N -0.589 5.589 16 C -0.276 4.276 17 H 0.074 0.926 18 C 0.048 3.952 19 N -0.884 5.884 20 Si 0.853 3.147 21 H -0.289 1.289 22 H -0.296 1.296 23 H -0.261 1.261 24 C 0.154 3.846 25 C 0.054 3.946 26 O -0.565 6.565 27 C 0.107 3.893 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.419 0.581 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.263 0.737 41 H 0.068 0.932 42 H 0.038 0.962 43 H 0.025 0.975 44 H 0.049 0.951 45 H 0.363 0.637 46 H 0.095 0.905 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.961 -6.089 -3.413 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.403 3.597 4 O -0.465 6.465 5 N -0.358 5.358 6 C -0.008 4.008 7 C 0.293 3.707 8 O -0.416 6.416 9 N -0.329 5.329 10 C -0.020 4.020 11 C -0.171 4.171 12 C -0.171 4.171 13 C 0.070 3.930 14 H 0.078 0.922 15 N -0.310 5.310 16 C -0.404 4.404 17 H 0.091 0.909 18 C -0.154 4.154 19 N -0.523 5.523 20 Si 0.680 3.320 21 H -0.216 1.216 22 H -0.223 1.223 23 H -0.186 1.186 24 C 0.027 3.973 25 C -0.026 4.026 26 O -0.368 6.368 27 C -0.016 4.016 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.258 0.742 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.068 0.932 45 H 0.208 0.792 46 H 0.113 0.887 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.022 -5.502 -3.414 19.150 hybrid contribution 0.644 0.011 -0.682 0.938 sum -17.378 -5.491 -4.097 18.680 Atomic orbital electron populations 1.23205 0.74274 1.03505 1.02769 1.86255 1.24243 1.30841 1.87047 1.17970 0.83109 0.82254 0.76395 1.91004 1.64717 1.34812 1.56000 1.44257 1.03176 1.10651 1.77698 1.21105 0.90261 0.84486 1.04932 1.20191 0.88054 0.85172 0.77285 1.90694 1.76947 1.23332 1.50663 1.48151 1.08053 1.05343 1.71343 1.21853 0.97831 0.82353 1.00004 1.21931 0.97715 0.99708 0.97753 1.22020 0.92385 0.99600 1.03105 1.20518 0.84696 0.92050 0.95759 0.92240 1.43941 0.99724 1.68046 1.19271 1.18570 1.08023 1.27488 0.86313 0.90888 1.25625 0.96310 0.97304 0.96164 1.70003 1.06654 1.39296 1.36354 0.87194 0.76662 0.82434 0.85699 1.21619 1.22268 1.18552 1.21242 0.96442 0.88973 0.90597 1.23036 0.82962 0.97734 0.98841 1.86537 1.29147 1.24928 1.96215 1.22294 0.75175 1.03268 1.00862 0.87933 0.91801 0.91794 0.74222 0.88167 0.88119 0.90328 0.90704 0.92005 0.91075 0.90761 0.92490 0.92679 0.91383 0.94335 0.95689 0.93238 0.79231 0.88665 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -4.02 10.62 -40.31 -0.43 -4.44 16 3 C 0.65 8.20 8.75 54.06 0.47 8.67 16 4 O -0.58 -8.47 16.13 -19.29 -0.31 -8.78 16 5 N -0.70 -8.30 5.53 -66.47 -0.37 -8.67 16 6 C 0.12 1.35 4.50 -5.20 -0.02 1.33 16 7 C 0.51 7.31 7.77 -10.99 -0.09 7.23 16 8 O -0.54 -9.41 15.08 5.55 0.08 -9.33 16 9 N -0.60 -8.75 2.97 -172.80 -0.51 -9.27 16 10 C 0.10 1.20 6.34 -3.71 -0.02 1.17 16 11 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 12 C -0.13 -2.27 5.11 -26.69 -0.14 -2.40 16 13 C 0.18 3.38 2.09 -67.83 -0.14 3.24 16 14 H 0.06 1.18 7.52 -51.93 -0.39 0.79 16 15 N -0.59 -12.99 1.87 -165.55 -0.31 -13.30 16 16 C -0.28 -7.05 8.48 -15.06 -0.13 -7.17 16 17 H 0.07 2.04 6.98 -52.49 -0.37 1.68 16 18 C 0.05 1.30 5.03 -17.43 -0.09 1.21 16 19 N -0.88 -25.45 13.97 55.49 0.78 -24.68 16 20 Si 0.85 20.45 26.44 -169.99 -4.49 15.95 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.26 -5.97 5.94 56.52 0.34 -5.64 16 24 C 0.15 3.21 4.23 -4.04 -0.02 3.19 16 25 C 0.05 0.99 7.39 37.16 0.27 1.27 16 26 O -0.56 -9.91 11.93 -35.23 -0.42 -10.33 16 27 C 0.11 1.95 5.76 -3.74 -0.02 1.93 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.42 4.99 7.55 -40.82 -0.31 4.69 16 32 H 0.10 1.02 7.95 -51.93 -0.41 0.61 16 33 H 0.10 1.04 7.69 -51.93 -0.40 0.64 16 34 H 0.08 0.69 5.93 -51.93 -0.31 0.39 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.40 7.70 -51.93 -0.40 1.00 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.07 1.50 5.16 -51.92 -0.27 1.24 16 42 H 0.04 0.78 8.02 -51.93 -0.42 0.36 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.36 4.90 9.12 45.56 0.42 5.31 16 46 H 0.10 1.95 6.37 -51.93 -0.33 1.62 16 47 H 0.07 1.44 6.84 -51.93 -0.36 1.08 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -32.50 375.19 -5.89 -38.38 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.54 Total: 9.50 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 0.99 Total: 19.30 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.42 Total: -55.91 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.08 Total: -32.88 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.49 Total: 15.95 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.50 -5.89 -38.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689201957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.290 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds