Wall clock time and date at job start Tue Mar 31 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34638 * 116.99870 * 2 1 4 4 O 1.21512 * 119.99734 * 359.97438 * 3 2 1 5 5 N 1.34768 * 119.99977 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99985 * 179.72242 * 5 3 2 7 7 C 1.50706 * 109.47560 * 180.27709 * 6 5 3 8 8 O 1.21280 * 119.99428 * 359.97438 * 7 6 5 9 9 N 1.34766 * 120.00463 * 180.02562 * 7 6 5 10 10 C 1.46933 * 120.62994 * 359.97438 * 9 7 6 11 11 C 1.53187 * 108.77385 * 126.36969 * 10 9 7 12 12 C 1.53042 * 109.31748 * 54.63627 * 11 10 9 13 13 C 1.53048 * 109.53408 * 298.63536 * 12 11 10 14 14 H 1.08997 * 109.49498 * 301.37413 * 13 12 11 15 15 N 1.46501 * 109.49596 * 181.31241 * 13 12 11 16 16 C 1.36938 * 120.00067 * 305.13385 * 15 13 12 17 17 H 1.08002 * 120.00059 * 321.58740 * 16 15 13 18 18 C 1.38813 * 119.99809 * 141.58384 * 16 15 13 19 19 N 1.31622 * 120.00481 * 339.39597 * 18 16 15 20 20 Si 1.86808 * 119.99760 * 159.39166 * 18 16 15 21 21 H 1.48495 * 109.46893 * 90.00187 * 20 18 16 22 22 H 1.48496 * 109.47178 * 210.00264 * 20 18 16 23 23 H 1.48495 * 109.46992 * 330.00066 * 20 18 16 24 24 C 1.46499 * 119.99992 * 125.12841 * 15 13 12 25 25 C 1.53004 * 109.47007 * 90.00251 * 24 15 13 26 26 O 1.42903 * 109.47185 * 64.99769 * 25 24 15 27 27 C 1.46924 * 120.63114 * 179.71761 * 9 7 6 28 28 H 1.08998 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47189 * 299.99674 * 1 2 3 30 30 H 1.08998 * 109.47205 * 59.99737 * 1 2 3 31 31 H 0.96997 * 120.00643 * 0.02562 * 5 3 2 32 32 H 1.08998 * 109.47563 * 300.27995 * 6 5 3 33 33 H 1.08997 * 109.47305 * 60.28086 * 6 5 3 34 34 H 1.09001 * 109.58364 * 246.15661 * 10 9 7 35 35 H 1.08998 * 109.58456 * 6.44184 * 10 9 7 36 36 H 1.09004 * 109.50170 * 174.58607 * 11 10 9 37 37 H 1.08999 * 109.49927 * 294.68463 * 11 10 9 38 38 H 1.09001 * 109.45711 * 58.65125 * 12 11 10 39 39 H 1.08997 * 109.46367 * 178.61239 * 12 11 10 40 40 H 0.96999 * 119.99985 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.47460 * 210.00436 * 24 15 13 42 42 H 1.09006 * 109.47448 * 330.00518 * 24 15 13 43 43 H 1.08995 * 109.47271 * 184.99973 * 25 24 15 44 44 H 1.09000 * 109.46998 * 305.00317 * 25 24 15 45 45 H 0.96697 * 113.99777 * 180.02562 * 26 25 24 46 46 H 1.08998 * 109.58777 * 353.42049 * 27 9 7 47 47 H 1.09010 * 109.58581 * 113.84668 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.0741 2.5755 -0.0056 7 6 5.5682 2.3782 -0.0105 8 8 6.0318 1.2575 -0.0086 9 7 6.3891 3.4469 -0.0160 10 6 5.8425 4.8108 -0.0179 11 6 6.4612 5.5915 1.1458 12 6 7.9869 5.5258 1.0452 13 6 8.4439 4.0685 1.1440 14 1 8.1043 3.6440 2.0887 15 7 9.9063 4.0093 1.0791 16 6 10.5686 4.5813 0.0258 17 1 10.1565 4.5171 -0.9704 18 6 11.7698 5.2439 0.2386 19 7 12.0767 5.6800 1.4420 20 14 12.9507 5.5164 -1.1830 21 1 12.6402 6.8098 -1.8432 22 1 14.3441 5.5441 -0.6706 23 1 12.8063 4.4120 -2.1651 24 6 10.6601 3.3383 2.1410 25 6 10.8400 1.8615 1.7836 26 8 11.6535 1.7500 0.6141 27 6 7.8478 3.2705 -0.0146 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.9375 0.4568 0.0005 32 1 3.7780 3.1301 -0.8960 33 1 3.7846 3.1350 0.8838 34 1 6.0888 5.3019 -0.9594 35 1 4.7597 4.7706 0.1009 36 1 6.1380 6.6315 1.0990 37 1 6.1397 5.1524 2.0903 38 1 8.3060 5.9425 0.0899 39 1 8.4296 6.1012 1.8582 40 1 12.9159 6.1432 1.5905 41 1 11.6379 3.8085 2.2454 42 1 10.1151 3.4207 3.0814 43 1 11.3222 1.3432 2.6124 44 1 9.8653 1.4127 1.5923 45 1 11.8094 0.8393 0.3288 46 1 8.0880 2.2145 0.1088 47 1 8.2607 3.6338 -0.9558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689201958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:44 Heat of formation + Delta-G solvation = -132.788581 kcal Electronic energy + Delta-G solvation = -29513.737735 eV Core-core repulsion = 25311.984467 eV Total energy + Delta-G solvation = -4201.753269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.79123 -39.98405 -37.75925 -36.79970 -36.20270 -34.78432 -34.64083 -32.29838 -31.35452 -30.01162 -28.85475 -27.48576 -26.84427 -24.74981 -24.09559 -22.26397 -21.64896 -20.87982 -19.99333 -19.48262 -18.49523 -17.28991 -16.90879 -16.74772 -16.50026 -16.32213 -15.93214 -15.56654 -14.91793 -14.41918 -14.35944 -14.22111 -14.11277 -13.97653 -13.63866 -13.45860 -12.97506 -12.91081 -12.79929 -12.43403 -12.36325 -12.32910 -12.06120 -11.30775 -11.04406 -11.03628 -10.92543 -10.90399 -10.80103 -10.67380 -10.40882 -10.28651 -9.93246 -9.90467 -9.77371 -9.57369 -9.55399 -9.04128 -8.56721 -8.30769 -6.52629 -5.72372 -3.29798 1.84119 2.50348 2.60291 3.08485 3.41991 3.49902 3.56531 4.04516 4.30998 4.54985 4.85720 4.90964 4.93050 5.04504 5.06234 5.19991 5.20659 5.26137 5.35751 5.36930 5.52861 5.64703 5.79325 5.87680 5.91907 5.99740 6.09409 6.13225 6.19694 6.26723 6.33809 6.44766 6.56635 6.64954 6.71904 6.78388 7.01872 7.14655 7.18782 7.49138 7.66864 7.87378 8.05266 8.12086 8.48836 8.64724 9.22230 9.86310 10.41353 11.29394 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.002775 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.630024 B =10088.212429 C =10644.661601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.650 3.350 4 O -0.575 6.575 5 N -0.696 5.696 6 C 0.119 3.881 7 C 0.506 3.494 8 O -0.543 6.543 9 N -0.596 5.596 10 C 0.103 3.897 11 C -0.134 4.134 12 C -0.120 4.120 13 C 0.166 3.834 14 H 0.048 0.952 15 N -0.568 5.568 16 C -0.238 4.238 17 H 0.054 0.946 18 C 0.020 3.980 19 N -0.892 5.892 20 Si 0.897 3.103 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.278 1.278 24 C 0.144 3.856 25 C 0.059 3.941 26 O -0.542 6.542 27 C 0.101 3.899 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.419 0.581 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.252 0.748 41 H 0.102 0.898 42 H 0.037 0.963 43 H 0.019 0.981 44 H 0.023 0.977 45 H 0.349 0.651 46 H 0.084 0.916 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.735 -6.775 -0.427 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.403 3.597 4 O -0.465 6.465 5 N -0.359 5.359 6 C -0.007 4.007 7 C 0.292 3.708 8 O -0.422 6.422 9 N -0.329 5.329 10 C -0.020 4.020 11 C -0.173 4.173 12 C -0.159 4.159 13 C 0.057 3.943 14 H 0.066 0.934 15 N -0.287 5.287 16 C -0.367 4.367 17 H 0.072 0.928 18 C -0.179 4.179 19 N -0.535 5.535 20 Si 0.728 3.272 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.017 3.983 25 C -0.021 4.021 26 O -0.344 6.344 27 C -0.022 4.022 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.258 0.742 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.120 0.880 42 H 0.055 0.945 43 H 0.037 0.963 44 H 0.041 0.959 45 H 0.192 0.808 46 H 0.102 0.898 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.691 -6.121 -0.297 18.722 hybrid contribution 0.765 -0.734 -0.702 1.272 sum -16.926 -6.855 -1.000 18.289 Atomic orbital electron populations 1.23211 0.74231 1.03527 1.02789 1.86257 1.24277 1.30822 1.87037 1.17963 0.83086 0.82271 0.76390 1.91005 1.64695 1.34810 1.55944 1.44254 1.03212 1.10620 1.77772 1.21101 0.90084 0.84525 1.05034 1.20241 0.88188 0.85122 0.77220 1.90693 1.77042 1.23432 1.51011 1.48198 1.07963 1.05526 1.71177 1.21873 0.97802 0.82113 1.00220 1.21977 0.98245 0.99602 0.97464 1.21880 0.91489 0.98972 1.03535 1.20563 0.86222 0.93021 0.94474 0.93396 1.43648 0.98184 1.61835 1.25019 1.18665 1.03731 1.27665 0.86659 0.92791 1.25045 1.00288 0.96571 0.96013 1.69959 1.23647 1.38690 1.21186 0.86405 0.80760 0.77555 0.82529 1.21805 1.21787 1.20350 1.21046 1.00447 0.87993 0.88788 1.23067 0.91782 1.01154 0.86084 1.86851 1.72380 1.29045 1.46082 1.22407 0.75453 1.02477 1.01869 0.87916 0.91775 0.91781 0.74243 0.88103 0.88008 0.90758 0.90354 0.91062 0.92120 0.91130 0.91547 0.93796 0.87993 0.94482 0.96314 0.95880 0.80791 0.89802 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.56 101.05 1.07 1.47 16 2 O -0.37 -3.96 10.62 -40.32 -0.43 -4.39 16 3 C 0.65 8.08 8.75 54.05 0.47 8.55 16 4 O -0.58 -8.35 16.13 -19.28 -0.31 -8.66 16 5 N -0.70 -8.16 5.53 -66.47 -0.37 -8.53 16 6 C 0.12 1.32 4.50 -5.19 -0.02 1.30 16 7 C 0.51 7.14 7.77 -10.99 -0.09 7.05 16 8 O -0.54 -9.38 15.08 5.56 0.08 -9.30 16 9 N -0.60 -8.54 2.98 -173.00 -0.52 -9.06 16 10 C 0.10 1.18 6.35 -3.71 -0.02 1.15 16 11 C -0.13 -1.71 6.08 -26.61 -0.16 -1.87 16 12 C -0.12 -2.10 5.03 -26.68 -0.13 -2.24 16 13 C 0.17 3.19 2.77 -68.01 -0.19 3.00 16 14 H 0.05 0.92 7.77 -51.93 -0.40 0.52 16 15 N -0.57 -13.13 2.34 -165.75 -0.39 -13.51 16 16 C -0.24 -6.12 7.58 -15.06 -0.11 -6.24 16 17 H 0.05 1.42 6.98 -52.49 -0.37 1.05 16 18 C 0.02 0.55 4.97 -17.43 -0.09 0.47 16 19 N -0.89 -25.00 11.48 55.49 0.64 -24.37 16 20 Si 0.90 21.88 29.60 -169.99 -5.03 16.84 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.14 3.27 5.71 -4.04 -0.02 3.25 16 25 C 0.06 1.19 7.39 37.16 0.27 1.46 16 26 O -0.54 -11.52 13.13 -35.23 -0.46 -11.98 16 27 C 0.10 1.81 5.81 -3.91 -0.02 1.79 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.42 4.91 7.55 -40.82 -0.31 4.60 16 32 H 0.10 1.00 7.94 -51.93 -0.41 0.58 16 33 H 0.10 1.02 7.69 -51.93 -0.40 0.62 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.36 7.60 -51.93 -0.39 0.97 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.10 2.69 5.55 -51.93 -0.29 2.40 16 42 H 0.04 0.78 7.88 -51.93 -0.41 0.37 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.35 5.54 9.12 45.56 0.42 5.95 16 46 H 0.08 1.67 7.01 -51.93 -0.36 1.31 16 47 H 0.07 1.43 7.02 -51.92 -0.36 1.06 16 LS Contribution 381.08 15.07 5.74 5.74 Total: -1.00 -32.93 381.08 -6.63 -39.56 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.54 Total: 8.50 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 0.95 Total: 19.15 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.63 Total: -55.47 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -1.12 Total: -34.32 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.93 -6.63 -39.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689201958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.232 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds