Wall clock time and date at job start Tue Mar 31 2020 05:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00304 * 2 1 4 4 H 1.48496 * 109.47132 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47416 * 300.00162 * 3 2 1 6 6 H 1.48503 * 109.46833 * 60.00285 * 3 2 1 7 7 C 1.38815 * 119.99206 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99350 * 197.02755 * 7 2 1 9 9 N 1.36934 * 120.00396 * 17.03624 * 7 2 1 10 10 C 1.47076 * 120.87858 * 206.62909 * 9 7 2 11 11 C 1.53238 * 108.68491 * 231.10586 * 10 9 7 12 12 N 1.46957 * 109.31276 * 306.47687 * 11 10 9 13 13 C 1.46904 * 110.96688 * 187.06023 * 12 11 10 14 14 C 1.52995 * 109.47035 * 65.49337 * 13 12 11 15 15 C 1.53002 * 109.47265 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47496 * 180.02562 * 15 14 13 17 17 C 1.34775 * 119.99828 * 180.02562 * 16 15 14 18 18 O 1.21277 * 120.00373 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99578 * 180.02562 * 17 16 15 20 20 F 1.39900 * 110.43914 * 310.69888 * 19 17 16 21 21 C 1.54813 * 110.48664 * 188.15556 * 19 17 16 22 22 C 1.55224 * 101.98644 * 220.51959 * 21 19 17 23 23 O 1.44378 * 103.56774 * 36.87856 * 22 21 19 24 24 C 1.43738 * 106.97528 * 320.01232 * 23 22 21 25 25 C 1.46896 * 111.44271 * 62.80490 * 12 11 10 26 26 C 1.47083 * 120.88179 * 26.65507 * 9 7 2 27 27 H 0.97004 * 119.99537 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.63279 * 350.92069 * 10 9 7 29 29 H 1.09008 * 109.62397 * 111.30331 * 10 9 7 30 30 H 1.09003 * 109.48857 * 66.22978 * 11 10 9 31 31 H 1.08999 * 109.49484 * 186.30661 * 11 10 9 32 32 H 1.08994 * 109.46465 * 185.49112 * 13 12 11 33 33 H 1.09001 * 109.46878 * 305.49170 * 13 12 11 34 34 H 1.08998 * 109.47597 * 299.99673 * 14 13 12 35 35 H 1.09001 * 109.47424 * 60.00167 * 14 13 12 36 36 H 1.08997 * 109.47280 * 300.00262 * 15 14 13 37 37 H 1.09001 * 109.46516 * 59.99914 * 15 14 13 38 38 H 0.97001 * 119.99632 * 0.02562 * 16 15 14 39 39 H 1.08998 * 110.90584 * 338.64121 * 21 19 17 40 40 H 1.08995 * 110.90664 * 102.24519 * 21 19 17 41 41 H 1.09004 * 110.52163 * 278.38133 * 22 21 19 42 42 H 1.08997 * 110.78039 * 155.50064 * 22 21 19 43 43 H 1.09006 * 109.88091 * 267.08943 * 24 23 22 44 44 H 1.09003 * 110.00816 * 146.00918 * 24 23 22 45 45 H 1.09001 * 109.48753 * 177.02061 * 25 12 11 46 46 H 1.08998 * 109.49553 * 56.94705 * 25 12 11 47 47 H 1.08997 * 109.62573 * 248.50367 * 26 9 7 48 48 H 1.09001 * 109.62788 * 8.88787 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0101 -1.2023 -0.0005 8 1 3.0546 -1.2229 0.2734 9 7 1.3704 -2.3619 -0.3485 10 6 1.8300 -3.6610 0.1657 11 6 2.0022 -4.6230 -1.0146 12 7 0.7569 -4.6640 -1.7938 13 6 0.8222 -5.6983 -2.8351 14 6 0.9010 -7.0782 -2.1790 15 6 0.9684 -8.1554 -3.2634 16 7 1.0432 -9.4768 -2.6352 17 6 1.1116 -10.5839 -3.4007 18 8 1.1107 -10.4864 -4.6096 19 6 1.1880 -11.9432 -2.7545 20 9 2.1800 -11.9601 -1.7680 21 6 1.4629 -13.0341 -3.8180 22 6 0.5353 -14.1856 -3.3458 23 8 -0.6367 -13.4980 -2.8578 24 6 -0.1766 -12.3324 -2.1538 25 6 0.4432 -3.3516 -2.3743 26 6 0.2059 -2.3415 -1.2467 27 1 -0.4850 0.8401 0.0004 28 1 2.7838 -3.5354 0.6779 29 1 1.0915 -4.0619 0.8601 30 1 2.8154 -4.2752 -1.6516 31 1 2.2339 -5.6202 -0.6403 32 1 -0.0701 -5.6428 -3.4585 33 1 1.7067 -5.5379 -3.4515 34 1 1.7933 -7.1336 -1.5554 35 1 0.0165 -7.2385 -1.5626 36 1 0.0759 -8.0999 -3.8866 37 1 1.8527 -7.9952 -3.8801 38 1 1.0436 -9.5548 -1.6683 39 1 1.1786 -12.6887 -4.8119 40 1 2.5085 -13.3413 -3.7987 41 1 1.0086 -14.7535 -2.5447 42 1 0.2775 -14.8405 -4.1781 43 1 -0.0636 -12.5602 -1.0938 44 1 -0.8854 -11.5145 -2.2833 45 1 -0.4547 -3.4303 -2.9872 46 1 1.2773 -3.0182 -2.9918 47 1 -0.6902 -2.6171 -0.6908 48 1 0.0841 -1.3426 -1.6656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690064610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:13 Heat of formation + Delta-G solvation = -95.695817 kcal Electronic energy + Delta-G solvation = -28253.283919 eV Core-core repulsion = 24065.511903 eV Total energy + Delta-G solvation = -4187.772016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -48.54296 -40.51455 -39.05299 -38.28662 -36.03714 -34.48214 -32.45966 -31.98052 -30.89147 -30.00874 -29.56305 -27.00602 -25.05210 -23.96418 -23.17714 -22.71099 -22.23251 -21.27994 -20.41115 -19.11546 -18.52704 -17.56816 -16.96565 -16.81778 -16.19205 -15.98225 -15.73617 -15.24335 -15.15123 -14.92489 -14.81420 -14.37466 -14.26314 -14.03453 -13.78000 -13.63504 -13.44217 -13.05062 -13.03199 -12.72354 -12.29339 -12.21256 -12.14320 -11.86980 -11.66675 -11.43686 -11.38467 -11.12721 -10.87550 -10.71593 -10.57305 -10.47013 -10.30589 -10.18204 -10.04939 -9.75403 -9.60724 -9.52965 -8.52075 -7.85709 -6.67995 -5.79509 -3.20586 1.89718 2.44518 3.17114 3.35974 3.36857 3.43913 3.46013 3.66026 3.98624 4.20399 4.24405 4.39276 4.48951 4.57440 4.80672 4.89335 4.92397 5.03636 5.07669 5.10572 5.18610 5.36771 5.39912 5.41619 5.44502 5.50468 5.65336 5.83124 5.87806 5.94469 6.00995 6.08772 6.11639 6.14461 6.23046 6.33418 6.51051 6.67221 6.90649 6.91595 7.22735 7.55457 7.58719 7.63056 7.69216 7.80792 8.42265 9.20044 9.83469 10.41875 11.29356 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.037616 B = 0.001803 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.176049 B =15524.018353 C =15648.887424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.148 3.852 11 C 0.042 3.958 12 N -0.534 5.534 13 C 0.058 3.942 14 C -0.128 4.128 15 C 0.118 3.882 16 N -0.715 5.715 17 C 0.508 3.492 18 O -0.517 6.517 19 C 0.067 3.933 20 F -0.183 7.183 21 C -0.166 4.166 22 C 0.046 3.954 23 O -0.363 6.363 24 C 0.036 3.964 25 C 0.037 3.963 26 C 0.177 3.823 27 H 0.253 0.747 28 H 0.054 0.946 29 H 0.025 0.975 30 H 0.026 0.974 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.406 0.594 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.025 0.975 47 H 0.026 0.974 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.218 -26.680 -6.229 27.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.088 4.088 12 N -0.258 5.258 13 C -0.071 4.071 14 C -0.167 4.167 15 C -0.005 4.005 16 N -0.366 5.366 17 C 0.290 3.710 18 O -0.392 6.392 19 C 0.045 3.955 20 F -0.163 7.163 21 C -0.204 4.204 22 C -0.030 4.030 23 O -0.281 6.281 24 C -0.042 4.042 25 C -0.092 4.092 26 C 0.051 3.949 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.241 0.759 39 H 0.134 0.866 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.079 0.921 46 H 0.043 0.957 47 H 0.044 0.956 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.549 -26.591 -6.774 27.445 hybrid contribution 1.439 1.169 0.087 1.856 sum 1.988 -25.422 -6.687 26.362 Atomic orbital electron populations 1.70042 1.05202 1.25360 1.54181 1.25031 0.95327 0.98377 1.01090 0.86223 0.79302 0.83972 0.77284 1.20330 1.21579 1.21708 1.19233 0.92593 0.84804 1.41432 0.91627 1.44122 1.34264 1.01243 1.52261 1.20964 0.97713 0.86534 0.92620 1.22686 0.89726 0.99350 0.97023 1.61909 1.34541 1.05832 1.23556 1.21940 1.00548 0.90901 0.93692 1.21816 1.03658 0.93481 0.97698 1.21479 1.02738 0.80188 0.96129 1.46004 1.73700 1.06255 1.10690 1.20293 0.77392 0.85548 0.87729 1.90746 1.48706 1.86253 1.13478 1.22575 0.88830 0.95876 0.88183 1.92955 1.62911 1.97452 1.62978 1.23760 1.02909 0.93607 1.00167 1.23715 0.85355 0.94552 0.99425 1.88959 1.28964 1.37116 1.73073 1.23752 0.92725 0.90299 0.97395 1.22883 0.98632 0.89134 0.98588 1.20872 0.88980 0.96633 0.88416 0.93667 0.92732 0.95754 0.95524 0.91862 0.90971 0.95284 0.90985 0.90198 0.90843 0.91146 0.75891 0.86597 0.88052 0.91258 0.87586 0.89414 0.87844 0.92066 0.95690 0.95561 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 11.15 55.49 0.62 -25.58 16 2 C 0.00 0.00 4.93 -17.43 -0.09 -0.08 16 3 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.25 -6.91 9.63 -15.06 -0.15 -7.05 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -15.04 3.04 -172.02 -0.52 -15.56 16 10 C 0.15 3.12 6.68 -3.60 -0.02 3.09 16 11 C 0.04 0.72 5.47 -3.67 -0.02 0.70 16 12 N -0.53 -9.06 4.62 -234.28 -1.08 -10.14 16 13 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 14 C -0.13 -1.30 5.26 -26.73 -0.14 -1.44 16 15 C 0.12 1.11 5.67 -4.04 -0.02 1.09 16 16 N -0.72 -6.11 5.54 -60.30 -0.33 -6.45 16 17 C 0.51 5.09 6.66 -10.99 -0.07 5.02 16 18 O -0.52 -6.83 15.42 5.56 0.09 -6.75 16 19 C 0.07 0.54 1.55 -90.24 -0.14 0.40 16 20 F -0.18 -1.52 16.82 2.25 0.04 -1.48 16 21 C -0.17 -1.16 6.40 -24.60 -0.16 -1.32 16 22 C 0.05 0.27 7.72 38.34 0.30 0.57 16 23 O -0.36 -3.09 11.52 -35.23 -0.41 -3.49 16 24 C 0.04 0.25 7.22 37.73 0.27 0.53 16 25 C 0.04 0.70 5.62 -3.71 -0.02 0.68 16 26 C 0.18 4.25 5.43 -3.60 -0.02 4.23 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.05 1.10 7.95 -51.93 -0.41 0.69 16 29 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.91 6.17 -51.93 -0.32 0.59 16 32 H 0.07 0.89 7.97 -51.93 -0.41 0.47 16 33 H 0.03 0.38 8.13 -51.93 -0.42 -0.04 16 34 H 0.07 0.73 6.40 -51.93 -0.33 0.40 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.41 2.65 8.46 -40.82 -0.35 2.31 16 39 H 0.12 0.95 6.80 -51.93 -0.35 0.60 16 40 H 0.10 0.58 8.12 -51.93 -0.42 0.16 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.49 8.03 -51.93 -0.42 0.07 16 44 H 0.10 0.68 7.69 -51.93 -0.40 0.28 16 45 H 0.06 1.06 7.99 -51.93 -0.41 0.64 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.09 2.36 6.11 -51.93 -0.32 2.05 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -32.39 381.52 -9.11 -41.49 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.92 Total: -1.57 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -0.30 Total: 7.15 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -1.32 Total: -57.73 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.32 Total: -10.24 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.39 -9.11 -41.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690064610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.201 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds